New Records of Some Phytoplankton for Bangladesh: Class - Chlorophyceae
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Contribution of the Calcifying Green Alga Phacotus Lenticularis to Lake Carbonate Sequestration
Technische Universität München Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt Lehrstuhl für Aquatische Systembiologie Contribution of the calcifying green alga Phacotus lenticularis to lake carbonate sequestration Sebastian Lenz Vollständiger Abdruck der von der Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt der Technischen Universität München zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften genehmigten Dissertation. Vorsitzender: Prof. Dr. Johannes Kollmann Prüfer der Dissertation: 1. Prof. Dr. Jürgen Geist 2. apl. Prof. Dr. Tanja Gschlößl Die Dissertation wurde am 21.01.2020 bei der Technischen Universität München eingereicht und durch die Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt am 23.04.2020 angenommen. So remember to look up at the stars and not down at your feet. Try to make sense of what you see and wonder about what makes the universe exist. Be curious. And however difficult life may seem, there is always something you can do and succeed at. It matters that you don’t just give up. Professor Stephen Hawking (y 14 March 2018) Contents Preface 10 1 Introduction 12 1.1 Carbon cycling and carbonate-water system in alkaline lakes . 12 1.2 Biogenic calcite precipitation . 14 1.3 Calcifying phytoplankton Phacotus lenticularis . 15 1.4 Objectives . 18 1.5 Materials and Methods . 19 1.5.1 Study sites and monitoring concept . 19 1.5.2 Sampling for representative monitoring . 21 1.5.3 Carbonate measurements . 23 1.5.4 Sediment core analysis . 28 2 Calcite production by the calcifying green alga Phacotus lenticularis 31 2.1 Abstract . 31 2.2 Author contributions . 32 2.3 Introduction . -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
Permian–Triassic Non-Marine Algae of Gondwana—Distributions
Earth-Science Reviews 212 (2021) 103382 Contents lists available at ScienceDirect Earth-Science Reviews journal homepage: www.elsevier.com/locate/earscirev Review Article Permian–Triassic non-marine algae of Gondwana—Distributions, natural T affinities and ecological implications ⁎ Chris Maysa,b, , Vivi Vajdaa, Stephen McLoughlina a Swedish Museum of Natural History, Box 50007, SE-104 05 Stockholm, Sweden b Monash University, School of Earth, Atmosphere and Environment, 9 Rainforest Walk, Clayton, VIC 3800, Australia ARTICLE INFO ABSTRACT Keywords: The abundance, diversity and extinction of non-marine algae are controlled by changes in the physical and Permian–Triassic chemical environment and community structure of continental ecosystems. We review a range of non-marine algae algae commonly found within the Permian and Triassic strata of Gondwana and highlight and discuss the non- mass extinctions marine algal abundance anomalies recorded in the immediate aftermath of the end-Permian extinction interval Gondwana (EPE; 252 Ma). We further review and contrast the marine and continental algal records of the global biotic freshwater ecology crises within the Permian–Triassic interval. Specifically, we provide a case study of 17 species (in 13 genera) palaeobiogeography from the succession spanning the EPE in the Sydney Basin, eastern Australia. The affinities and ecological im- plications of these fossil-genera are summarised, and their global Permian–Triassic palaeogeographic and stra- tigraphic distributions are collated. Most of these fossil taxa have close extant algal relatives that are most common in freshwater, brackish or terrestrial conditions, and all have recognizable affinities to groups known to produce chemically stable biopolymers that favour their preservation over long geological intervals. -
Lateral Gene Transfer of Anion-Conducting Channelrhodopsins Between Green Algae and Giant Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042127; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 5 Lateral gene transfer of anion-conducting channelrhodopsins between green algae and giant viruses Andrey Rozenberg 1,5, Johannes Oppermann 2,5, Jonas Wietek 2,3, Rodrigo Gaston Fernandez Lahore 2, Ruth-Anne Sandaa 4, Gunnar Bratbak 4, Peter Hegemann 2,6, and Oded 10 Béjà 1,6 1Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel. 2Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, Berlin 10115, Germany. 3Present address: Department of Neurobiology, Weizmann 15 Institute of Science, Rehovot 7610001, Israel. 4Department of Biological Sciences, University of Bergen, N-5020 Bergen, Norway. 5These authors contributed equally: Andrey Rozenberg, Johannes Oppermann. 6These authors jointly supervised this work: Peter Hegemann, Oded Béjà. e-mail: [email protected] ; [email protected] 20 ABSTRACT Channelrhodopsins (ChRs) are algal light-gated ion channels widely used as optogenetic tools for manipulating neuronal activity 1,2. Four ChR families are currently known. Green algal 3–5 and cryptophyte 6 cation-conducting ChRs (CCRs), cryptophyte anion-conducting ChRs (ACRs) 7, and the MerMAID ChRs 8. Here we 25 report the discovery of a new family of phylogenetically distinct ChRs encoded by marine giant viruses and acquired from their unicellular green algal prasinophyte hosts. -
Hidden Diversity of Plankton in the Soda Lake Nakuru, Kenya, During A
Hydrobiologia (2013) 702:95–103 DOI 10.1007/s10750-012-1310-y PRIMARY RESEARCH PAPER Hidden diversity of eukaryotic plankton in the soda lake Nakuru, Kenya, during a phase of low salinity revealed by a SSU rRNA gene clone library Wei Luo • Kiplagat Kotut • Lothar Krienitz Received: 12 July 2012 / Revised: 28 August 2012 / Accepted: 31 August 2012 / Published online: 16 September 2012 Ó Springer Science+Business Media B.V. 2012 Abstract A SSU rRNA gene clone library was Our findings reveal a hidden diversity, which would constructed to establish the diversity of eukaryotic not have been detected by traditional observations. plankton in the African soda lake Nakuru during a phase of low salinity (9.7 ppt = hyposaline). Nor- Keywords Chlorophyta Á Clone library Á Lake mally, the lake is mesosaline (up to 50 ppt) and its Nakuru Á Lesser Flamingo Á Phytoflagellates Á phytoplankton is dominated by few species of cyano- Soda lakes Á SSU rRNA bacteria, in particular Arthrospira fusiformis, which is the main food resource of Lesser Flamingos. Our study recovered a unique phytoplankton species composi- Introduction tion characterized by a high diversity of monadoid and coccoid green algae. Out of 77 clones detected, 52 The phytoplankton of saline-alkaline lakes in the Great belonged to Chlorophyta. Many of the chlorophytes African Rift Valley usually is dominated by cyano- were transported from the catchment area into the lake bacteria, mainly Arthrospira fusiformis (Voronichin) through small seasonal rivers and an outflow of the Koma´rek et Lund (often erroneously identified as Nakuru town sewage treatment plant. Other phyloge- ‘‘Spirulina platensis’’), which forms the food base for netic groups detected were Fungi, Cryptophyta, hundreds of thousands of Lesser Flamingos (Phoenic- Jakobida, Alveolata, Stramenopiles, and Metazoa. -
Imgim21 [Ug Cl11 [Mg C/M?I [Ug Cl11 [Mg C/M21 [Ug Cl11 Img C/M21 [Ug Cill Img Clm21 Median 54,L 7,7 1,5 02 32 0,5 3,O 0,4 46,4 6,6
.. Lebensräume polare On the ecology of racteristics, se other aquatic habi Marina Car Ber. Polarforsch. Meeresforsch. 40 ISSN 1618 - 3193 Marina Carstens c/o Institut füPolarökologi der UniversitäKiel Wischhofstraß 1-3, Geb. 12 D-24148 Kiel Germany E-mail: [email protected] Diese Arbeit ist die leicht verändert Fassung einer Dissertation, die der Mathematisch-Naturwissenschaftlichen Fakultäder Christian-Albrechts- UniversitäKiel im Juni 2001 vorgelegt wurde. Inhaltsverzeichnis Inhaltsverzeichnis Zusammenfassung Summary Einleitung Lebensräum im Ökosyste Meereis Ökologi der Meereistümpe- Erkenntnisse anderer Autoren Ziel der Untersuchungen Terminologie Untersuchungsgebiet Hydrographie Eisbedeckung Eisverhältnissin den Untersuchungsjahren 1993 und 1994 Material und Methoden Untersuchungsmaterial Meereistümpe Vergleichsstationen: Landtümpeund -Seen, Tümpeauf Gletschern und Eisbergen, Proben aus dem marinen Milieu 3.1.2.1 Schmelzwassertümpeauf Gletschern und Eisbergen 3.1.2.2Landtümpe und -Seen 3.1.2.3Proben aus dem marinen Milieu Untersuchungsmethoden Probennahme und in situ-Messungen (Tem eratur, pH-Wert, Leitfähigkeit Sauerstoffkonzentration, PAR, Dimensionen) Bestimmung der Nährstoffkonzentratione Bestimmung der Salinitä Bestimmung der Chlorophyll a-Konzentrationen Bestimmung der Konzentration des partikuläre organischen Materials (CIN-Analyse) Fixierung und Probenaufbereitung füdie mikroskopische Auswertung Quantitative mikroskopische Auswertung Mikroskopische Analyse, Identifizierung und systematische -
Structural Variation and Evolution of Chloroplast Trnas in Green Algae
Structural variation and evolution of chloroplast tRNAs in green algae Fangbing Qi, Yajing Zhao, Ningbo Zhao, Kai Wang, Zhonghu Li and Yingjuan Wang State Key Laboratory of Biotechnology of Shannxi Province, Key Laboratory of Resource Biology and Biotech- nology in Western China (Ministry of Education), College of Life Science, Northwest University, Xi'an, China ABSTRACT As one of the important groups of the core Chlorophyta (Green algae), Chlorophyceae plays an important role in the evolution of plants. As a carrier of amino acids, tRNA plays an indispensable role in life activities. However, the structural variation of chloroplast tRNA and its evolutionary characteristics in Chlorophyta species have not been well studied. In this study, we analyzed the chloroplast genome tRNAs of 14 species in five categories in the green algae. We found that the number of chloroplasts tRNAs of Chlorophyceae is maintained between 28–32, and the length of the gene sequence ranges from 71 nt to 91 nt. There are 23–27 anticodon types of tRNAs, and some tRNAs have missing anticodons that are compensated for by other types of anticodons of that tRNA. In addition, three tRNAs were found to contain introns in the anti-codon loop of the tRNA, but the analysis scored poorly and it is presumed that these introns are not functional. After multiple sequence alignment, the 9-loop is the most conserved structural unit in the tRNA secondary structure, containing mostly U-U-C-x-A-x-U conserved sequences. The number of transitions in tRNA is higher than the number of transversions. In the replication loss analysis, it was found that green algal chloroplast tRNAs may have undergone substantial gene loss during the course of evolution. -
Chloroplast Phylogenomic Analysis of Chlorophyte Green Algae Identifies a Novel Lineage Sister to the Sphaeropleales (Chlorophyceae) Claude Lemieux*, Antony T
Lemieux et al. BMC Evolutionary Biology (2015) 15:264 DOI 10.1186/s12862-015-0544-5 RESEARCHARTICLE Open Access Chloroplast phylogenomic analysis of chlorophyte green algae identifies a novel lineage sister to the Sphaeropleales (Chlorophyceae) Claude Lemieux*, Antony T. Vincent, Aurélie Labarre, Christian Otis and Monique Turmel Abstract Background: The class Chlorophyceae (Chlorophyta) includes morphologically and ecologically diverse green algae. Most of the documented species belong to the clade formed by the Chlamydomonadales (also called Volvocales) and Sphaeropleales. Although studies based on the nuclear 18S rRNA gene or a few combined genes have shed light on the diversity and phylogenetic structure of the Chlamydomonadales, the positions of many of the monophyletic groups identified remain uncertain. Here, we used a chloroplast phylogenomic approach to delineate the relationships among these lineages. Results: To generate the analyzed amino acid and nucleotide data sets, we sequenced the chloroplast DNAs (cpDNAs) of 24 chlorophycean taxa; these included representatives from 16 of the 21 primary clades previously recognized in the Chlamydomonadales, two taxa from a coccoid lineage (Jenufa) that was suspected to be sister to the Golenkiniaceae, and two sphaeroplealeans. Using Bayesian and/or maximum likelihood inference methods, we analyzed an amino acid data set that was assembled from 69 cpDNA-encoded proteins of 73 core chlorophyte (including 33 chlorophyceans), as well as two nucleotide data sets that were generated from the 69 genes coding for these proteins and 29 RNA-coding genes. The protein and gene phylogenies were congruent and robustly resolved the branching order of most of the investigated lineages. Within the Chlamydomonadales, 22 taxa formed an assemblage of five major clades/lineages. -
Freshwater Algae in Britain and Ireland - Bibliography
Freshwater algae in Britain and Ireland - Bibliography Floras, monographs, articles with records and environmental information, together with papers dealing with taxonomic/nomenclatural changes since 2003 (previous update of ‘Coded List’) as well as those helpful for identification purposes. Theses are listed only where available online and include unpublished information. Useful websites are listed at the end of the bibliography. Further links to relevant information (catalogues, websites, photocatalogues) can be found on the site managed by the British Phycological Society (http://www.brphycsoc.org/links.lasso). Abbas A, Godward MBE (1964) Cytology in relation to taxonomy in Chaetophorales. Journal of the Linnean Society, Botany 58: 499–597. Abbott J, Emsley F, Hick T, Stubbins J, Turner WB, West W (1886) Contributions to a fauna and flora of West Yorkshire: algae (exclusive of Diatomaceae). Transactions of the Leeds Naturalists' Club and Scientific Association 1: 69–78, pl.1. Acton E (1909) Coccomyxa subellipsoidea, a new member of the Palmellaceae. Annals of Botany 23: 537–573. Acton E (1916a) On the structure and origin of Cladophora-balls. New Phytologist 15: 1–10. Acton E (1916b) On a new penetrating alga. New Phytologist 15: 97–102. Acton E (1916c) Studies on the nuclear division in desmids. 1. Hyalotheca dissiliens (Smith) Bréb. Annals of Botany 30: 379–382. Adams J (1908) A synopsis of Irish algae, freshwater and marine. Proceedings of the Royal Irish Academy 27B: 11–60. Ahmadjian V (1967) A guide to the algae occurring as lichen symbionts: isolation, culture, cultural physiology and identification. Phycologia 6: 127–166 Allanson BR (1973) The fine structure of the periphyton of Chara sp. -
Spring Phytoplankton and Periphyton Composition: Case Study from a Thermally Abnormal Lakes in Western Poland
Biodiv. Res. Conserv. 36: 17-24, 2014 BRC www.brc.amu.edu.pl DOI 10.2478/biorc-2014-0010 Submitted 27.02.2014, Accepted 27.12.2014 Spring phytoplankton and periphyton composition: case study from a thermally abnormal lakes in Western Poland Lubomira Burchardt1*, František Hindák2, Jiří Komárek3, Horst Lange-Bertalot4, Beata Messyasz1, Marta Pikosz1, Łukasz Wejnerowski1, Emilia Jakubas1, Andrzej Rybak1 & Maciej Gąbka1 1Department of Hydrobiology, Faculty of Biology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznań, Poland 2Institute of Botany, Slovak Academy of Sciences, Dúbravská cesta 14, 84523 Bratislava, Slovakia 3Institute of Botany AS CR, Dukelská 135, 37982 Třeboň, Czech Republic 4Botanisches Institut der Universität, Johann Wolfgang Goethe – Universität, Siesmayerstraße 70, 60054 Frankfurt am Main, Germany * corresponding author (e-mail: [email protected]) Abstract: Getting to know the response of different groups of aquatic organisms tested in altered thermal environments to environmental conditions makes it possible to understand processes of adaptation and limitation factors such as temperature and light. Field sites were located in three thermally abnormal lakes (cooling system of power plants), in eastern part of Wielkopolska region (western Poland): Pątnowskie, Wąsosko-Mikorzyńskie and Licheńskie. Water temperatures of these lakes do not fall below 10°C throughout the year, and the surface water temperature in spring is about 20˚C. In this study, we investigated the species structure of the spring phytoplankton community in a temperature gradient and analyzed diversity of periphyton collected from alien species (Vallisneria spiralis) and stones. 94 taxa belonging to 56 genera of algae (including phytoplankton and periphyton) were determined. The highest number of algae species were observed among Chlorophyta (49), Bacillariophyceae (34) and Cyanobacteria (6). -
7 Systematics of the Green Algae
7989_C007.fm Page 123 Monday, June 25, 2007 8:57 PM Systematics of the green 7 algae: conflict of classic and modern approaches Thomas Pröschold and Frederik Leliaert CONTENTS Introduction ....................................................................................................................................124 How are green algae classified? ........................................................................................125 The morphological concept ...............................................................................................125 The ultrastructural concept ................................................................................................125 The molecular concept (phylogenetic concept).................................................................131 Classic versus modern approaches: problems with identification of species and genera.....................................................................................................................134 Taxonomic revision of genera and species using polyphasic approaches....................................139 Polyphasic approaches used for characterization of the genera Oogamochlamys and Lobochlamys....................................................................................140 Delimiting phylogenetic species by a multi-gene approach in Micromonas and Halimeda .....................................................................................................................143 Conclusions ....................................................................................................................................144 -
Page 1 植物研究雜誌 J. Jpn. Bot. 80: 197-207 (2005) Two Species Of
植物研究雑誌 J. J. Jpn. Bo t. 80: 80: 197-207(2005) Two Species of Chlorogonium (Volvocales ,Chlorophyceae) from Japan Takashi Takashi NAKADA a, Atsusi NAKAZAWA b and Hisayoshi NOZAKI a aDepartment aDepartment of Biological Sciences , Graduate School of Science ,University of Tokyo , Hongo 7-3-1 ,Bunkyo-ku ,Tokyo ,113 ・0033 JAPAN; E 司 mail: nozaki@biol ふ u-tokyo.ac.jp bRIKEN (The Institute of Physical and Chemical Research) , Hirosawa 2-1 ,Wako ,Saitama , 351-0198 JAPAN (Received on December 7,2004) Strains Strains from two species of Chlorogonium were isolated from Japanese soil samples , and and were examined with light and electron microscopy. A molecular phylogeny based on rbcL rbcL sequences was also constructed for these strains. One of the two species ,Chloro- gonium gonium elongatum (P. A. Dang.) France , has not been previously studied in culture from Japan. Japan. The other species was identified as Chlorogonium kasakii Nozaki , which has not been been previously recorded from Japan. Key words: Chlorogonium ,Chlorophyceae ,culture strain ,distribution ,taxonomy. Chlorogonium Ehrenb. (Haematococca- light microscope. These species can be relia- ceae ,Volvocales , Chlorophyceae) is a uni- bly distinguished using an electron micro- cellular cellular genus characterized by its spindle- scope and examination of pyrenoid stability shaped shaped vegetative cells (e. g. ,Smith 1950). under photoheterotrophic culture condition Ettl Ettl (1 980) distinguished this genus from (Nozaki et al. 1998). Therefore , the records Chlamydomonas Ehrenb. by its first trans- of C. euchlorum and C. elongatum from verse verse cell division without protoplasmic ro- Japan 訂 'e to be re 四 assessed using newly iso- tation.