Tick- and Flea-Borne Rickettsial Emerging Zoonoses
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“Candidatus Deianiraea Vastatrix” with the Ciliate Paramecium Suggests
bioRxiv preprint doi: https://doi.org/10.1101/479196; this version posted November 27, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. The extracellular association of the bacterium “Candidatus Deianiraea vastatrix” with the ciliate Paramecium suggests an alternative scenario for the evolution of Rickettsiales 5 Castelli M.1, Sabaneyeva E.2, Lanzoni O.3, Lebedeva N.4, Floriano A.M.5, Gaiarsa S.5,6, Benken K.7, Modeo L. 3, Bandi C.1, Potekhin A.8, Sassera D.5*, Petroni G.3* 1. Centro Romeo ed Enrica Invernizzi Ricerca Pediatrica, Dipartimento di Bioscienze, Università 10 degli studi di Milano, Milan, Italy 2. Department of Cytology and Histology, Faculty of Biology, Saint Petersburg State University, Saint-Petersburg, Russia 3. Dipartimento di Biologia, Università di Pisa, Pisa, Italy 4 Centre of Core Facilities “Culture Collections of Microorganisms”, Saint Petersburg State 15 University, Saint Petersburg, Russia 5. Dipartimento di Biologia e Biotecnologie, Università degli studi di Pavia, Pavia, Italy 6. UOC Microbiologia e Virologia, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy 7. Core Facility Center for Microscopy and Microanalysis, Saint Petersburg State University, Saint- Petersburg, Russia 20 8. Department of Microbiology, Faculty of Biology, Saint Petersburg State University, Saint- Petersburg, Russia * Corresponding authors, contacts: [email protected] ; [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/479196; this version posted November 27, 2018. -
Fleas and Flea-Borne Diseases
International Journal of Infectious Diseases 14 (2010) e667–e676 Contents lists available at ScienceDirect International Journal of Infectious Diseases journal homepage: www.elsevier.com/locate/ijid Review Fleas and flea-borne diseases Idir Bitam a, Katharina Dittmar b, Philippe Parola a, Michael F. Whiting c, Didier Raoult a,* a Unite´ de Recherche en Maladies Infectieuses Tropicales Emergentes, CNRS-IRD UMR 6236, Faculte´ de Me´decine, Universite´ de la Me´diterrane´e, 27 Bd Jean Moulin, 13385 Marseille Cedex 5, France b Department of Biological Sciences, SUNY at Buffalo, Buffalo, NY, USA c Department of Biology, Brigham Young University, Provo, Utah, USA ARTICLE INFO SUMMARY Article history: Flea-borne infections are emerging or re-emerging throughout the world, and their incidence is on the Received 3 February 2009 rise. Furthermore, their distribution and that of their vectors is shifting and expanding. This publication Received in revised form 2 June 2009 reviews general flea biology and the distribution of the flea-borne diseases of public health importance Accepted 4 November 2009 throughout the world, their principal flea vectors, and the extent of their public health burden. Such an Corresponding Editor: William Cameron, overall review is necessary to understand the importance of this group of infections and the resources Ottawa, Canada that must be allocated to their control by public health authorities to ensure their timely diagnosis and treatment. Keywords: ß 2010 International Society for Infectious Diseases. Published by Elsevier Ltd. All rights reserved. Flea Siphonaptera Plague Yersinia pestis Rickettsia Bartonella Introduction to 16 families and 238 genera have been described, but only a minority is synanthropic, that is they live in close association with The past decades have seen a dramatic change in the geographic humans (Table 1).4,5 and host ranges of many vector-borne pathogens, and their diseases. -
Rickettsia Felis: Molecular Characterization of a New Member of the Spotted Fever Group
International Journal of Systematic and Evolutionary Microbiology (2001), 51, 339–347 Printed in Great Britain Rickettsia felis: molecular characterization of a new member of the spotted fever group Donald H. Bouyer,1 John Stenos,2 Patricia Crocquet-Valdes,1 Cecilia G. Moron,1 Vsevolod L. Popov,1 Jorge E. Zavala-Velazquez,3 Lane D. Foil,4 Diane R. Stothard,5 Abdu F. Azad6 and David H. Walker1 Author for correspondence: David H. Walker. Tel: j1 409 772 2856. Fax: j1 409 772 2500. e-mail: dwalker!utmb.edu 1 Department of Pathology, In this report, placement of Rickettsia felis in the spotted fever group (SFG) WHO Collaborating Center rather than the typhus group (TG) of Rickettsia is proposed. The organism, for Tropical Diseases, University of Texas Medical which was first observed in cat fleas (Ctenocephalides felis) by electron Branch, 301 University microscopy, has not yet been reported to have been cultivated reproducibly, Blvd, Galveston, TX thereby limiting the standard rickettsial typing by serological means. To 77555-0609, USA overcome this challenge, several genes were selected as targets to be utilized 2 Australian Rickettsial for the classification of R. felis. DNA from cat fleas naturally infected with R. Reference Laboratory, Douglas Hocking Medical felis was amplified by PCR utilizing primer sets specific for the 190 kDa surface Institute, Geelong antigen (rOmpA) and 17 kDa antigen genes. The entire 5513 bp rompA gene Hospital, Geelong, was sequenced, characterized and found to have several unique features when Australia compared to the rompA genes of other Rickettsia. Phylogenetic analysis of the 3 Department of Tropical partial sequence of the 17 kDa antigen gene indicated that R. -
Ohio Department of Health, Bureau of Infectious Diseases Disease Name Class A, Requires Immediate Phone Call to Local Health
Ohio Department of Health, Bureau of Infectious Diseases Reporting specifics for select diseases reportable by ELR Class A, requires immediate phone Susceptibilities specimen type Reportable test name (can change if Disease Name other specifics+ call to local health required* specifics~ state/federal case definition or department reporting requirements change) Culture independent diagnostic tests' (CIDT), like BioFire panel or BD MAX, E. histolytica Stain specimen = stool, bile results should be sent as E. histolytica DNA fluid, duodenal fluid, 260373001^DETECTED^SCT with E. histolytica Antigen Amebiasis (Entamoeba histolytica) No No tissue large intestine, disease/organism-specific DNA LOINC E. histolytica Antibody tissue small intestine codes OR a generic CIDT-LOINC code E. histolytica IgM with organism-specific DNA SNOMED E. histolytica IgG codes E. histolytica Total Antibody Ova and Parasite Anthrax Antibody Anthrax Antigen Anthrax EITB Acute Anthrax EITB Convalescent Anthrax Yes No Culture ELISA PCR Stain/microscopy Stain/spore ID Eastern Equine Encephalitis virus Antibody Eastern Equine Encephalitis virus IgG Antibody Eastern Equine Encephalitis virus IgM Arboviral neuroinvasive and non- Eastern Equine Encephalitis virus RNA neuroinvasive disease: Eastern equine California serogroup virus Antibody encephalitis virus disease; LaCrosse Equivocal results are accepted for all California serogroup virus IgG Antibody virus disease (other California arborviral diseases; California serogroup virus IgM Antibody specimen = blood, serum, serogroup -
Sclerosing Lymphangitis of the Penis
Brit. J. vener. Dis. (1972) 48, 545 Br J Vener Dis: first published as 10.1136/sti.48.6.545 on 1 December 1972. Downloaded from Sclerosing lymphangitis of the penis A. LASSUS, K. M. NIEMI, S.-L. VALLE, AND U. KIISTALA From the Department of Dermatology and Venereology, University Central Hospital, Helsinki, Finland Non-venereal sclerosing lymphangitis of the penis of the lesion was perforated a clear yellowish fluid leaked (NSLP) has been considered a rare condition, and out and the lesion became softer and smaller. A biopsy only fourteen cases have been reported (Hoffmann, was taken from the wall of the lesion. After the operation, 1923, 1938; von Berde 1937; Nickel and Plumb, the lesion had clinically disappeared. 1962; Kandil and Al-Kashlan, 1970). The disorder was originally described by Hoffmann (1923), who referred to it as 'simulation of primary syphilis by gonorrhoeal lymphangitis (gonorrhoeal pseudo- chancre)'. In a later paper Hoffmann (1938) called the condition a 'non-venereal plastic lymphangitis of the coronary sulcus of the penis with circumscribed edema'. The aetiology of the disorder is not known, copyright. but its non-venereal nature has been stressed in subsequent reports (Nickel and Plumb, 1962; Kandil and Al-Kashlan, 1970). It has been suggested that it may be related to mechanical trauma, virus infection, irritation by menstrual blood, or tuber- culosis. NSLP appears suddenly as a firm, cordlike, encircle the translucent lesion, which may almost http://sti.bmj.com/ penis in the coronal sulcus. The histological findings suggest that it results from fibrotic thickening of a large lymph vessel. -
Stanford Emergency Department & Clinical
STANFORD EMERGENCY DEPARTMENT & CLINICAL DECISION UNIT EMPIRIC ANTIBIOTIC GUIDELINES FOR ACUTE BACTERIAL SKIN AND SKIN-STRUCTURE INFECTIONS PURULENT CELLULITIS (cutaneous abscess, carbuncle, furuncle) Common pathogen: Staphylococcus aureus Duration of Therapy: 5-10 days Condition/Severity Admit/CDU/Discharge Cultures? Antibiotic Recommendation Mild < 5 cm Discharge No I&D Only ± TMP-SMX DS 1-2 PO BID Mild > 5 cm Discharge Yes – I&D plus Antibiotics: wound TMP-SMX DS 1-2 PO BID Typical abscess +/- cellulitis with no I&D systemic signs of infection Alternative: Doxycycline 100 mg PO BID Moderate Discharge Yes – TMP-SMX DS 1-2 PO BID wound only one Purulent infection with I&D Alternative: Doxycycline 100 mg PO BID systemic sign of infection: CDU if any factors below1,2: EMPIRIC ANTIBIOTICS: temp>38°C - • Concern for poor adherence to therapy TMP-SMX DS 1-2 PO BID HR >90 bpm - • Exacerbation of comorbidities RR>24 bpm Alternative: - • Significant clinical concern Yes – abnormal WBC >12K or <400 • Doxycycline 100 mg PO BID - Note: cutaneous inflammation and systemic wound cells/mcg/L features often worsen after initiating therapy I&D Lymphangitis DEFINITIVE ANTIBIOTICS: - and failure to improve at 24 hours NOT MRSA: TMP-SMX DS 1-2 PO BID considered clinical failure MSSA: dicloxacillin 500mg PO QID or cephalexin 500mg PO QID Severe EMPIRIC ANTIBIOTICS: Vancomycin Per Pharmacy • Hypotension Alternatives: Consult pharmacy for restricted antibiotics • 2 or more systemic signs of Admission Yes - infection blood DEFINITIVE ANTIBIOTICS: - temp>38°C MRSA: Vancomycin - HR >90 bpm MSSA: Cefazolin 2g IV Q8H - RR>24 bpm - abnormal WBC >12K or <400 cells/mcg/L - Lymphangitis • Immunocompromised** CELLULITIS (NON-PURULENT) Common pathogens: Streptococcus spp (usually S. -
Distribution Agreement in Presenting This Thesis Or Dissertation As A
Distribution Agreement In presenting this thesis or dissertation as a partial fulfillment of the requirements for an advanced degree from Emory University, I hereby grant to Emory University and its agents the non-exclusive license to archive, make accessible, and display my thesis or dissertation in whole or in part in all forms of media, now or hereafter known, including display on the world wide web. I understand that I may select some access restrictions as part of the online submission of this thesis or dissertation. I retain all ownership rights to the copyright of the thesis or dissertation. I also retain the right to use in future works (such as articles or books) all or part of this thesis or dissertation. Signature: _____________________________ ______________ Jillian Leigh Fitzpatrick Date Travel-related zoonotic diseases associated with human exposure to rodents: a review of GeoSentinel Surveillance Data, 1996 – 2011 By Jillian Leigh Fitzpatrick Master of Public Health Epidemiology _________________________________________ Dr. John McGowan, Jr. Committee Chair _________________________________________ Dr. Nina Marano Committee Member Travel-related zoonotic diseases associated with human exposure to rodents: a review of GeoSentinel Surveillance Data, 1996 – 2011 By Jillian Leigh Fitzpatrick Bachelor of Science Xavier University 2009 Faculty Committee Chair: John E. McGowan, Jr., MD An abstract of A thesis submitted to the Faculty of the Rollins School of Public Health of Emory University in partial fulfillment of the requirements for the degree of Master of Public Health in Epidemiology 2012 Abstract Travel-related zoonotic diseases associated with human exposure to rodents: a review of GeoSentinel Surveillance Data, 1996 – 2011 By Jillian Leigh Fitzpatrick Current knowledge of the incidence and risk factors associated with rodent-borne zoonoses in travelers is limited. -
Lymphographic Studies in Acute Lymphogranuloma Venereum Infection
Brit. J7. vener. Dis. (1976) 52, 399 Br J Vener Dis: first published as 10.1136/sti.52.6.399 on 1 December 1976. Downloaded from Lymphographic studies in acute lymphogranuloma venereum infection A. 0. OSOBA AND C. A. BEETLESTONE From the Special Treatment Clinic and the Departments of Medical Microbology and Radiology, University of Ibadan, Nigeria Summary 1954) described a convenient method of cannulating Lymphography, a radiological method of demon- the lymph vessels and injecting water-soluble strating lymphatic channels and nodes, has been contrastmedium, the procedurehas become extensively used to investigate three cases of acute bubonic used. Lymphography has been used in a variety of lymphogranuloma venereum (LGV). There is conditions in which the pathological process origi- nates in or is associated with lymph nodes (Koehler, general agreement that LGV has a predilection for 1968a, b). In lymphomas, the lymphographic lymphatic channels and lymph nodes. However, appearance can be pathognomonic, hence much very little is known of the extent of lymph node excellent work has been done in this field (Abrams, involvement in the early bubonic stage and whether Takahashi, and Adams, 1968; Lee, 1968; Rosenberg, there is merely a lymphangitis or complete lymph- 1968). However, little work has been done on atic obstruction. inflammatory conditions such as tuberculosis, syphilis The present study was undertaken to determine and lymphogranuloma venereum (LGV), which copyright. the lymphographic appearance in acute bubonic produce lesions in lymph glands. Because lympho- LGV, the extent of lymphatic node involvement in graphy is the only direct method of visualizing the early LGV, and the usefulness of the procedure in lymphatics and lymph nodes, and since it can objectively evaluate the inaccessible pelvic and the management of LGV patients. -
Intraspecies Comparative Genomics of Rickettsia
AIX ͲMARSEILLE UNIVERSITÉ FACULTÉ DE MÉDECINE DE MARSEILLE ÉCOLE DOCTORALE DES SCIENCES DE LA VIE ET DE LA SANTÉ T H È S E Présentée et publiquement soutenue devant LA FACULTÉ DE MÉDECINE DE MARSEILLE Le 13 décembre 2013 Par M. Erwin SENTAUSA Né le 16 décembre 1979 àMalang, Indonésie INTRASPECIES COMPARATIVE GENOMICS OF RICKETTSIA Pour obtenir le grade de DOCTORAT d’AIX ͲMARSEILLE UNIVERSITÉ SPÉCIALITÉ :PATHOLOGIE HUMAINE Ͳ MALADIES INFECTIEUSES Membres du Jury de la Thèse : Dr. Patricia RENESTO Rapporteur Pr. Max MAURIN Rapporteur Dr. Florence FENOLLAR Membre du Jury Pr. Pierre ͲEdouard FOURNIER Directeur de thèse Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes UM63, CNRS 7278, IRD 198, Inserm 1095 Avant Propos Le format de présentation de cette thèse correspond à une recommandation de la spécialité Maladies Infectieuses et Microbiologie, à l’intérieur du Master de Sciences de la Vie et de la Santé qui dépend de l’Ecole Doctorale des Sciences de la Vie de Marseille. Le candidat est amené àrespecter des règles qui lui sont imposées et qui comportent un format de thèse utilisé dans le Nord de l’Europe permettant un meilleur rangement que les thèses traditionnelles. Par ailleurs, la partie introduction et bibliographie est remplacée par une revue envoyée dans un journal afin de permettre une évaluation extérieure de la qualité de la revue et de permettre àl’étudiant de le commencer le plus tôt possible une bibliographie exhaustive sur le domaine de cette thèse. Par ailleurs, la thèse est présentée sur article publié, accepté ou soumis associé d’un bref commentaire donnant le sens général du travail. -
Applied and Environmental Microbiology
APPLIED AND ENVIRONMENTAL MICROBIOLOGY Volume 74 May 2008 No. 10 GENETICS AND MOLECULAR BIOLOGY Discovering the Hidden Secondary Metabolome of Daniel Krug, Gabriela Zurek, Ole 3058–3068 Myxococcus xanthus: a Study of Intraspecific Diversity Revermann, Michiel Vos, Gregory J. Velicer, and Rolf Mu¨ller Shuttle Vector Expression in Thermococcus kodakaraensis: Thomas J. Santangelo, L’ubomı´ra 3099–3104 Contributions of cis Elements to Protein Synthesis in a Cˇubonˇova´, and John N. Reeve Hyperthermophilic Archaeon Heterogeneous Selection in a Spatially Structured Frances R. Slater, Kenneth D. 3189–3197 Environment Affects Fitness Tradeoffs of Plasmid Carriage Bruce, Richard J. Ellis, Andrew K. in Pseudomonads Lilley, and Sarah L. Turner Characterization of Endogenous Plasmids from Lactobacillus Fang Fang, Sarah Flynn, Yin Li, 3216–3228 salivarius UCC118 Marcus J. Claesson, Jan-Peter van Pijkeren, J. Kevin Collins, Douwe van Sinderen, and Paul W. O’Toole ENZYMOLOGY AND PROTEIN ENGINEERING Conversion Shift of D-Fructose to D-Psicose for Enzyme- Nam-Hee Kim, Hye-Jung Kim, 3008–3013 Catalyzed Epimerization by Addition of Borate Dong-Il Kang, Ki-Woong Jeong, Jung-Kul Lee, Yangmee Kim, and Deok-Kun Oh PHYSIOLOGY AND BIOTECHNOLOGY Efficient Production of L-Ribose with a Recombinant Ryan D. Woodyer, Nathan J. 2967–2975 Escherichia coli Biocatalyst Wymer, F. Michael Racine, Shama N. Khan, and Badal C. Saha Comparison of Microbial and Photochemical Processes and Andrei Bunescu, Pascale Besse- 2976–2984 Their Combination for Degradation of 2-Aminobenzothiazole Hoggan, Martine Sancelme, Gilles Mailhot, and Anne-Marie Delort Bioenergy Production via Microbial Conversion of Residual Lisa M. Gieg, Kathleen E. Duncan, 3022–3029 Oil to Natural Gas and Joseph M. -
Paradoxical Evolution of Rickettsial Genomes
Ticks and Tick-borne Diseases 10 (2019) 462–469 Contents lists available at ScienceDirect Ticks and Tick-borne Diseases journal homepage: www.elsevier.com/locate/ttbdis Paradoxical evolution of rickettsial genomes T ⁎ Awa Diopa, Didier Raoultb, Pierre-Edouard Fourniera, a UMR VITROME, Aix-Marseille University, IRD, Service de Santé des Armées, Assistance Publique-Hôpitaux de Marseille, Institut Hospitalo-Uuniversitaire Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005, Marseille, France b UMR MEPHI, Aix-Marseille University, IRD, Assistance Publique-Hôpitaux de Marseille, Institut Hospitalo-Uuniversitaire Méditerranée Infection, Marseille, France ARTICLE INFO ABSTRACT Keywords: Rickettsia species are strictly intracellular bacteria that evolved approximately 150 million years ago from a Rickettsia presumably free-living common ancestor from the order Rickettsiales that followed a transition to an obligate Genomics intracellular lifestyle. Rickettsiae are best known as human pathogens vectored by various arthropods causing a Evolution range of mild to severe human diseases. As part of their obligate intracellular lifestyle, rickettsial genomes have Virulence undergone a convergent evolution that includes a strong genomic reduction resulting from progressive gene Genome rearrangement degradation, genomic rearrangements as well as a paradoxical expansion of various genetic elements, notably Non-coding DNA Gene loss small RNAs and short palindromic elements whose role remains unknown. This reductive evolutionary process is DNA repeats not unique to members of the Rickettsia genus but is common to several human pathogenic bacteria. Gene loss, gene duplication, DNA repeat duplication and horizontal gene transfer all have shaped rickettsial genome evolution. Gene loss mostly involved amino-acid, ATP, LPS and cell wall component biosynthesis and tran- scriptional regulators, but with a high preservation of toxin-antitoxin (TA) modules, recombination and DNA repair proteins. -
Ancient DNA of Rickettsia Felis and Toxoplasma Gondii Implicated in the Death of a Hunter- 2 Gatherer Boy from South Africa, 2,000 Years Ago 3 4 Riaan F
bioRxiv preprint doi: https://doi.org/10.1101/2020.07.23.217141; this version posted July 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Ancient DNA of Rickettsia felis and Toxoplasma gondii implicated in the death of a hunter- 2 gatherer boy from South Africa, 2,000 years ago 3 4 Riaan F. Rifkin1,2,*,†, Surendra Vikram1,†, Jean-Baptiste J. Ramond1,2,3, Don A. Cowan1, Mattias 5 Jakobsson4,5,6, Carina M. Schlebusch4,5,6, Marlize Lombard5,* 6 7 1 Centre for Microbial Ecology and Genomics, Department of Biochemistry, Genetics and Microbiology, University of 8 Pretoria, Hatfield, South Africa. 9 2 Department of Anthropology and Geography, Human Origins and Palaeoenvironmental Research Group, Oxford Brookes 10 University, Oxford, UK. 11 3 Department of Molecular Genetics and Microbiology, Pontificia Universidad Católica de Chile, Santiago, Chile. 12 4 Department of Organismal Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen, Uppsala, Sweden. 13 5 Palaeo-Research Institute, University of Johannesburg, Auckland Park, South Africa. 14 6 SciLifeLab, Uppsala, Sweden. 15 16 *Corresponding authors ([email protected], [email protected]). 17 † Contributed equally to this work. 18 19 The Stone Age record of South Africa provides some of the earliest evidence for the biological 20 and cultural origins of Homo sapiens. While there is extensive genomic evidence for the selection 21 of polymorphisms in response to pathogen-pressure in sub-Saharan Africa, there is insufficient 22 evidence for ancient human-pathogen interactions in the region.