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The Jurassic Fossil Wood Diversity from Western Liaoning, NE China
Jiang et al. Journal of Palaeogeography (2019) 8:1 https://doi.org/10.1186/s42501-018-0018-y Journal of Palaeogeography RESEARCH Open Access The Jurassic fossil wood diversity from western Liaoning, NE China Zi-Kun Jiang1,2, Yong-Dong Wang2,3*, Ning Tian4,5, Ao-Wei Xie2,6, Wu Zhang7, Li-Qin Li2 and Min Huang1 Abstract Western Liaoning is a unique region in China that bears diverse types of Jurassic plants, including leaves, fern rhizomes, and wood, providing significant proxy for vegetation and palaeoenvironment reconstruction of the well-known Yanliao Flora in East Asia. In particular, the silicified wood is very abundant in the fossil Lagerstätte of the Jurassic Tiaojishan Formation in Beipiao, western Liaoning. Previous and recent systematic investigations documented a high diversity of the Jurassic wood assemblages. These assemblages are dominated by conifers, followed by cycads and ginkgoaleans. In total, about 30 species belonging to 21 genera of fossil wood have been recorded so far, which are represented by Cycadopsida, Ginkgopsida, Coniferopsida, and Gymnospermae incertae sedis. The evolutionary implications of several distinctive fossil wood taxa as well as palaeoclimate implications are summarized based on their anatomical structures and growth ring patterns. This work approaches the vegetation development and evolutionary significances of the wood taxa and their relatives, and provides clues for the further understanding of the diversity of the Jurassic Yanliao Flora in East Asia. Keywords: Fossil wood, Diversity, Evolution, Tiaojishan Formation, Jurassic 1 Introduction 2004;Wangetal.,2009). Among these localities, western Fossil floras are a significant record for the vegetation Liaoning is a well-known fossil Lagerstätte with diverse and for the palaeoenvironment reconstructions of the and well-preserved fossil plant foliages and wood (Zhang Mesozoic. -
Plant Evolution an Introduction to the History of Life
Plant Evolution An Introduction to the History of Life KARL J. NIKLAS The University of Chicago Press Chicago and London CONTENTS Preface vii Introduction 1 1 Origins and Early Events 29 2 The Invasion of Land and Air 93 3 Population Genetics, Adaptation, and Evolution 153 4 Development and Evolution 217 5 Speciation and Microevolution 271 6 Macroevolution 325 7 The Evolution of Multicellularity 377 8 Biophysics and Evolution 431 9 Ecology and Evolution 483 Glossary 537 Index 547 v Introduction The unpredictable and the predetermined unfold together to make everything the way it is. It’s how nature creates itself, on every scale, the snowflake and the snowstorm. — TOM STOPPARD, Arcadia, Act 1, Scene 4 (1993) Much has been written about evolution from the perspective of the history and biology of animals, but significantly less has been writ- ten about the evolutionary biology of plants. Zoocentricism in the biological literature is understandable to some extent because we are after all animals and not plants and because our self- interest is not entirely egotistical, since no biologist can deny the fact that animals have played significant and important roles as the actors on the stage of evolution come and go. The nearly romantic fascination with di- nosaurs and what caused their extinction is understandable, even though we should be equally fascinated with the monarchs of the Carboniferous, the tree lycopods and calamites, and with what caused their extinction (fig. 0.1). Yet, it must be understood that plants are as fascinating as animals, and that they are just as important to the study of biology in general and to understanding evolutionary theory in particular. -
Number of Living Species in Australia and the World
Numbers of Living Species in Australia and the World 2nd edition Arthur D. Chapman Australian Biodiversity Information Services australia’s nature Toowoomba, Australia there is more still to be discovered… Report for the Australian Biological Resources Study Canberra, Australia September 2009 CONTENTS Foreword 1 Insecta (insects) 23 Plants 43 Viruses 59 Arachnida Magnoliophyta (flowering plants) 43 Protoctista (mainly Introduction 2 (spiders, scorpions, etc) 26 Gymnosperms (Coniferophyta, Protozoa—others included Executive Summary 6 Pycnogonida (sea spiders) 28 Cycadophyta, Gnetophyta under fungi, algae, Myriapoda and Ginkgophyta) 45 Chromista, etc) 60 Detailed discussion by Group 12 (millipedes, centipedes) 29 Ferns and Allies 46 Chordates 13 Acknowledgements 63 Crustacea (crabs, lobsters, etc) 31 Bryophyta Mammalia (mammals) 13 Onychophora (velvet worms) 32 (mosses, liverworts, hornworts) 47 References 66 Aves (birds) 14 Hexapoda (proturans, springtails) 33 Plant Algae (including green Reptilia (reptiles) 15 Mollusca (molluscs, shellfish) 34 algae, red algae, glaucophytes) 49 Amphibia (frogs, etc) 16 Annelida (segmented worms) 35 Fungi 51 Pisces (fishes including Nematoda Fungi (excluding taxa Chondrichthyes and (nematodes, roundworms) 36 treated under Chromista Osteichthyes) 17 and Protoctista) 51 Acanthocephala Agnatha (hagfish, (thorny-headed worms) 37 Lichen-forming fungi 53 lampreys, slime eels) 18 Platyhelminthes (flat worms) 38 Others 54 Cephalochordata (lancelets) 19 Cnidaria (jellyfish, Prokaryota (Bacteria Tunicata or Urochordata sea anenomes, corals) 39 [Monera] of previous report) 54 (sea squirts, doliolids, salps) 20 Porifera (sponges) 40 Cyanophyta (Cyanobacteria) 55 Invertebrates 21 Other Invertebrates 41 Chromista (including some Hemichordata (hemichordates) 21 species previously included Echinodermata (starfish, under either algae or fungi) 56 sea cucumbers, etc) 22 FOREWORD In Australia and around the world, biodiversity is under huge Harnessing core science and knowledge bases, like and growing pressure. -
Lessons from 20 Years of Plant Genome Sequencing: an Unprecedented Resource in Need of More Diverse Representation
bioRxiv preprint doi: https://doi.org/10.1101/2021.05.31.446451; this version posted May 31, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Lessons from 20 years of plant genome sequencing: an unprecedented resource in need of more diverse representation Authors: Rose A. Marks1,2,3, Scott Hotaling4, Paul B. Frandsen5,6, and Robert VanBuren1,2 1. Department of Horticulture, Michigan State University, East Lansing, MI 48824, USA 2. Plant Resilience Institute, Michigan State University, East Lansing, MI 48824, USA 3. Department of Molecular and Cell Biology, University of Cape Town, Rondebosch 7701, South Africa 4. School of Biological Sciences, Washington State University, Pullman, WA, USA 5. Department of Plant and Wildlife Sciences, Brigham Young University, Provo, UT, USA 6. Data Science Lab, Smithsonian Institution, Washington, DC, USA Keywords: plants, embryophytes, genomics, colonialism, broadening participation Correspondence: Rose A. Marks, Department of Horticulture, Michigan State University, East Lansing, MI 48824, USA; Email: [email protected]; Phone: (603) 852-3190; ORCID iD: https://orcid.org/0000-0001-7102-5959 Abstract The field of plant genomics has grown rapidly in the past 20 years, leading to dramatic increases in both the quantity and quality of publicly available genomic resources. With an ever- expanding wealth of genomic data from an increasingly diverse set of taxa, unprecedented potential exists to better understand the evolution and genome biology of plants. -
S1. List of Taxa Included in the Disparity Analysis and the Phylogenetic Alysis, with Main References
S1. List of taxa included in the disparity analysis and the phylogenetic alysis, with main references. Taxa in bold are included in the phylogenetic analysis; taxa also indicated by * are included only in the phylogenetic analysis and not in the disparity analysis. Three unpublished arborescent taxa were included on the basis that they showed additional anatomical diversity. 1 Callixylon trunk from the Late Devonian of Marrocco showing large sclerotic nests in pith; 2 Axis from the late Tournaisian of Algeria, previously figured in Galtier (1988), and Galtier & Meyer-Berthaud (2006); 3 Trunk from the late Viséan of Australia. All these specimens and corresponding slides are currently kept in the Paleobotanical collections, Service des Collections, Université Montpellier II, France, under the specimen numbers 600/2/3, JC874 and YB1-2. Main reference Psilophyton* Banks et al., 1975 Aneurophytales Rellimia thomsonii Dannenhoffer & Bonamo, 2003; --- Dannenhoffer et al., 2007. Tetraxylopteris schmidtii Beck, 1957. Proteokalon petryi Scheckler & Banks, 1971. Triloboxylon arnoldii Stein & Beck, 1983. s m Archaeopteridales Callixylon brownii Hoskin & Cross, 1951. r e Callixylon erianum Arnold, 1930. p s o Callixylon huronensis Chitaley & Cai, 2001. n Callixylon newberry Arnold, 1931. m y g Callixylon trifilievii Lemoigne et al., 1983. o r Callixylon zalesskyi Arnold, 1930. P Callixylon sp. Meyer-Berthaud, unpublished data1. Eddya sullivanensis Beck, 1967. Protopityales Protopitys buchiana Scott, 1923; Galtier et al., 1998. P. scotica Walton, 1957. Protopitys sp. Decombeix et al., 2005. Elkinsiales Elkinsia polymorpha Serbet & Rothwell, 1992. Buteoxylales Buteoxylon gordonianum Barnard &Long, 1973; Matten et al., --- 1980. Triradioxylon primaevum Barnard & Long, 1975. Lyginopteridales Laceya hibernica May & Matten, 1983. Tristichia longii Galtier, 1977. -
Life in the End-Permian Dead Zone
Life in the end-Permian dead zone Cindy V. Looy*†, Richard J. Twitchett‡, David L. Dilcher§, Johanna H. A. Van Konijnenburg-Van Cittert*, and Henk Visscher* *Laboratory of Palaeobotany and Palynology, Utrecht University, Budapestlaan 4, 3584 CD Utrecht, The Netherlands; ‡Department of Earth Sciences, University of Southern California, Los Angeles, CA 90089-0740; and §Paleobotany Laboratory, Florida Museum of Natural History, University of Florida, Gainesville, FL 32611 Contributed by David L. Dilcher, May 1, 2001 The fossil record of land plants is an obvious source of information ecological crisis. On the basis of palynological data from a ‘‘dead on the dynamics of mass extinctions in the geological past. In zone’’ in a Permian–Triassic (P-Tr) transition sequence from conjunction with the end-Permian ecological crisis, Ϸ250 million East Greenland, in this paper we document evidence of non- years ago, palynological data from East Greenland reveal some equilibrium vegetation dynamics resulting in selective but time- unanticipated patterns. We document the significant time lag delayed extinctions among woody gymnosperms. between terrestrial ecosystem collapse and selective extinction among characteristic Late Permian plants. Furthermore, ecological The End-Permian ‘‘Dead Zone’’ crisis resulted in an initial increase in plant diversity, instead of a Latest Permian and earliest Triassic sediments in East Green- decrease. Paradoxically, these floral patterns correspond to a land (Fig. 1) are represented by the upper part of the Schuchert ‘‘dead zone’’ in the end-Permian faunal record, characterized by a Dal Formation and the overlying Wordie Creek Formation. The paucity of marine invertebrate megafossils. The time-delayed, predominantly fine-grained siliciclastic sediments of these for- end-Permian plant extinctions resemble modeled ‘‘extinction mations were deposited in a narrow, elongate, shallow-marine debt’’ responses of multispecies metapopulations to progressive basin. -
Rhizopogon Togasawariana Sp. Nov., the First Report of Rhizopogon Associated with an Asian Species of Pseudotsuga
Rhizopogon togasawariana sp. nov., the first report of Rhizopogon associated with an Asian species of Pseudotsuga Mujic, A. B., Hosaka, K., & Spatafora, J. W. (2014). Rhizopogon togasawariana sp. nov., the first report of Rhizopogon associated with an Asian species of Pseudotsuga. Mycologia, 106(1), 105-112. doi:10.3852/13-055 10.3852/13-055 Allen Press Inc. Version of Record http://hdl.handle.net/1957/47245 http://cdss.library.oregonstate.edu/sa-termsofuse Mycologia, 106(1), 2014, pp. 105–112. DOI: 10.3852/13-055 # 2014 by The Mycological Society of America, Lawrence, KS 66044-8897 Rhizopogon togasawariana sp. nov., the first report of Rhizopogon associated with an Asian species of Pseudotsuga Alija B. Mujic1 the natural and anthropogenic range of the family Department of Botany and Plant Pathology, Oregon and plays an important ecological role in the State University, Corvallis, Oregon 97331-2902 establishment and maintenance of forests (Tweig et Kentaro Hosaka al. 2007, Simard 2009). The foundational species Department of Botany, National Museum of Nature concepts for genus Rhizopogon were established in the and Science, Tsukuba-shi, Ibaraki, 305-0005, Japan North American monograph of Smith and Zeller (1966), and a detailed monograph also has been Joseph W. Spatafora produced for European Rhizopogon species (Martı´n Department of Botany and Plant Pathology, Oregon 1996). However, few data on Asian species of State University, Corvallis, Oregon 97331-2902 Rhizopogon have been incorporated into phylogenetic and taxonomic studies and only a limited account of Asian Rhizopogon species has been published for EM Abstract: Rhizopogon subgenus Villosuli are the only associates of Pinus (Hosford and Trappe 1988). -
Alien Flora of Europe: Species Diversity, Temporal Trends, Geographical Patterns and Research Needs
Preslia 80: 101–149, 2008 101 Alien flora of Europe: species diversity, temporal trends, geographical patterns and research needs Zavlečená flóra Evropy: druhová diverzita, časové trendy, zákonitosti geografického rozšíření a oblasti budoucího výzkumu Philip W. L a m b d o n1,2#, Petr P y š e k3,4*, Corina B a s n o u5, Martin H e j d a3,4, Margari- taArianoutsou6, Franz E s s l7, Vojtěch J a r o š í k4,3, Jan P e r g l3, Marten W i n t e r8, Paulina A n a s t a s i u9, Pavlos A n d r i opoulos6, Ioannis B a z o s6, Giuseppe Brundu10, Laura C e l e s t i - G r a p o w11, Philippe C h a s s o t12, Pinelopi D e l i p e t - rou13, Melanie J o s e f s s o n14, Salit K a r k15, Stefan K l o t z8, Yannis K o k k o r i s6, Ingolf K ü h n8, Hélia M a r c h a n t e16, Irena P e r g l o v á3, Joan P i n o5, Montserrat Vilà17, Andreas Z i k o s6, David R o y1 & Philip E. H u l m e18 1Centre for Ecology and Hydrology, Hill of Brathens, Banchory, Aberdeenshire AB31 4BW, Scotland, e-mail; [email protected], [email protected]; 2Kew Herbarium, Royal Botanic Gardens Kew, Richmond, Surrey, TW9 3AB, United Kingdom; 3Institute of Bot- any, Academy of Sciences of the Czech Republic, CZ-252 43 Průhonice, Czech Republic, e-mail: [email protected], [email protected], [email protected], [email protected]; 4Department of Ecology, Faculty of Science, Charles University, Viničná 7, CZ-128 01 Praha 2, Czech Republic; e-mail: [email protected]; 5Center for Ecological Research and Forestry Applications, Universitat Autònoma de Barcelona, 08193 Bellaterra, Spain, e-mail: [email protected], [email protected]; 6University of Athens, Faculty of Biology, Department of Ecology & Systematics, 15784 Athens, Greece, e-mail: [email protected], [email protected], [email protected], [email protected], [email protected]; 7Federal Environment Agency, Department of Nature Conservation, Spittelauer Lände 5, 1090 Vienna, Austria, e-mail: [email protected]; 8Helmholtz Centre for Environmental Research – UFZ, Department of Community Ecology, Theodor-Lieser- Str. -
Retallack 2021 Coal Balls
Palaeogeography, Palaeoclimatology, Palaeoecology 564 (2021) 110185 Contents lists available at ScienceDirect Palaeogeography, Palaeoclimatology, Palaeoecology journal homepage: www.elsevier.com/locate/palaeo Modern analogs reveal the origin of Carboniferous coal balls Gregory Retallack * Department of Earth Science, University of Oregon, Eugene, Oregon 97403-1272, USA ARTICLE INFO ABSTRACT Keywords: Coal balls are calcareous peats with cellular permineralization invaluable for understanding the anatomy of Coal ball Pennsylvanian and Permian fossil plants. Two distinct kinds of coal balls are here recognized in both Holocene Histosol and Pennsylvanian calcareous Histosols. Respirogenic calcite coal balls have arrays of calcite δ18O and δ13C like Carbon isotopes those of desert soil calcic horizons reflecting isotopic composition of CO2 gas from an aerobic microbiome. Permineralization Methanogenic calcite coal balls in contrast have invariant δ18O for a range of δ13C, and formed with anaerobic microbiomes in soil solutions with bicarbonate formed by methane oxidation and sugar fermentation. Respiro genic coal balls are described from Holocene peats in Eight Mile Creek South Australia, and noted from Carboniferous coals near Penistone, Yorkshire. Methanogenic coal balls are described from Carboniferous coals at Berryville (Illinois) and Steubenville (Ohio), Paleocene lignites of Sutton (Alaska), Eocene lignites of Axel Heiberg Island (Nunavut), Pleistocene peats of Konya (Turkey), and Holocene peats of Gramigne di Bando (Italy). Soils and paleosols with coal balls are neither common nor extinct, but were formed by two distinct soil microbiomes. 1. Introduction and Royer, 2019). Although best known from Euramerican coal mea sures of Pennsylvanian age (Greb et al., 1999; Raymond et al., 2012, Coal balls were best defined by Seward (1895, p. -
Ancient Noeggerathialean Reveals the Seed Plant Sister Group Diversified Alongside the Primary Seed Plant Radiation
Ancient noeggerathialean reveals the seed plant sister group diversified alongside the primary seed plant radiation Jun Wanga,b,c,1, Jason Hiltond,e, Hermann W. Pfefferkornf, Shijun Wangg, Yi Zhangh, Jiri Beki, Josef Pšenickaˇ j, Leyla J. Seyfullahk, and David Dilcherl,m,1 aState Key Laboratory of Palaeobiology and Stratigraphy, Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences, Nanjing 210008, China; bCenter for Excellence in Life and Paleoenvironment, Chinese Academy of Sciences, Nanjing 210008, China; cUniversity of Chinese Academy of Sciences, Shijingshan District, Beijing 100049, China; dSchool of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom; eBirmingham Institute of Forest Research, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom; fDepartment of Earth and Environmental Science, University of Pennsylvania, Philadelphia, PA 19104-6316; gState Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Xiangshan, Beijing 100093, China; hCollege of Paleontology, Shenyang Normal University, Key Laboratory for Evolution of Past Life in Northeast Asia, Ministry of Natural Resources, Shenyang 110034, China; iDepartment of Palaeobiology and Palaeoecology, Institute of Geology v.v.i., Academy of Sciences of the Czech Republic, 165 00 Praha 6, Czech Republic; jCentre of Palaeobiodiversity, West Bohemian Museum in Plzen, 301 36 Plzen, Czech Republic; kDepartment of Paleontology, Geozentrum, University of Vienna, 1090 Vienna, Austria; lIndiana Geological and Water Survey, Bloomington, IN 47404; and mDepartment of Geology and Atmospheric Science, Indiana University, Bloomington, IN 47405 Contributed by David Dilcher, September 10, 2020 (sent for review July 2, 2020; reviewed by Melanie Devore and Gregory J. -
A Physiologically Explicit Morphospace for Tracheid-Based Water Transport in Modern and Extinct Seed Plants
A Physiologically Explicit Morphospace for Tracheid-based Water Transport in Modern and Extinct Seed Plants The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Wilson, Jonathan P., and Andrew H. Knoll. 2010. A physiologically explicit morphospace for tracheid-based water transport in modern and extinct seed plants. Paleobiology 36(2): 335-355. Published Version doi:10.1666/08071.1 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:4795216 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Open Access Policy Articles, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#OAP Wilson - 1 A Physiologically Explicit Morphospace for Tracheid-Based Water Transport in Modern and Extinct Seed Plants Jonathan P. Wilson* Andrew H. Knoll September 7, 2009 RRH: PHYSIOLOGICALLY EXPLICIT MORPHOSPACE LRH: JONATHAN P. WILSON AND ANDREW H. KNOLL Wilson - 2 Abstract We present a morphometric analysis of water transport cells within a physiologically explicit three-dimensional space. Previous work has shown that cell length, diameter, and pit resistance govern the hydraulic resistance of individual conducting cells; thus, we use these three parameters as axes for our morphospace. We compare living and extinct plants within this space to investigate how patterns of plant conductivity have changed over evolutionary time. Extinct coniferophytes fall within the range of living conifers, despite differences in tracheid-level anatomy. Living cycads, Ginkgo biloba, the Miocene fossil Ginkgo beckii, and extinct cycadeoids overlap with both conifers and vesselless angiosperms. -
Archaeopteris Is the Earliest Known Modern Tree
letters to nature seawater nitrate mapping systems for use in open ocean and coastal waters. Deep-Sea Res. I 43, 1763± zones as important sites for the subsequent development of lateral 1775 (1996). 26. Obata, H., Karatani, H., Matsui, M. & Nakayama, E. Fundamental studies for chemical speciation in organs; and wood anatomy strategies that minimize the mechani- seawater with an improved analytical method. Mar. Chem. 56, 97±106 (1997). cal stresses caused by perennial branch growth. Acknowledgements. We thank G. Elrod, E. Guenther, C. Hunter, J. Nowicki and S. Tanner for the iron Archaeopteris is thought to have been an excurrent tree, with a analyses and assistance with sampling, and the crews of the research vessels Western Flyer and New Horizon single trunk producing helically arranged deciduous branches for providing valuable assistance at sea. Funding was provided by the David and Lucile Packard 7 Foundation through MBARI and by the National Science Foundation. growing almost horizontally . All studies relating to the develop- ment of Archaeopteris support the view that these ephemeral Correspondence and requests for materials should be addressed to K.S.J. (e-mail: johnson@mlml. calstate.edu). branches arise from the pseudomonopodial division of the trunk apex8±11. Apical branching also characterizes all other contempora- neous non-seed-plant taxa including those that had also evolved an arborescent habit, such as lepidosigillarioid lycopsids and cladoxy- Archaeopteris is the earliest lalean ferns. This pattern, which can disadvantage the tree if the trunk apex is damaged, contrasts with the axillary branching knownmoderntree reported in early seed plants12. Analysis of a 4 m-long trunk from the Famennian of Oklahoma has shown that Archaeopteris may Brigitte Meyer-Berthaud*, Stephen E.