Life in the End-Permian Dead Zone
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The Jurassic Fossil Wood Diversity from Western Liaoning, NE China
Jiang et al. Journal of Palaeogeography (2019) 8:1 https://doi.org/10.1186/s42501-018-0018-y Journal of Palaeogeography RESEARCH Open Access The Jurassic fossil wood diversity from western Liaoning, NE China Zi-Kun Jiang1,2, Yong-Dong Wang2,3*, Ning Tian4,5, Ao-Wei Xie2,6, Wu Zhang7, Li-Qin Li2 and Min Huang1 Abstract Western Liaoning is a unique region in China that bears diverse types of Jurassic plants, including leaves, fern rhizomes, and wood, providing significant proxy for vegetation and palaeoenvironment reconstruction of the well-known Yanliao Flora in East Asia. In particular, the silicified wood is very abundant in the fossil Lagerstätte of the Jurassic Tiaojishan Formation in Beipiao, western Liaoning. Previous and recent systematic investigations documented a high diversity of the Jurassic wood assemblages. These assemblages are dominated by conifers, followed by cycads and ginkgoaleans. In total, about 30 species belonging to 21 genera of fossil wood have been recorded so far, which are represented by Cycadopsida, Ginkgopsida, Coniferopsida, and Gymnospermae incertae sedis. The evolutionary implications of several distinctive fossil wood taxa as well as palaeoclimate implications are summarized based on their anatomical structures and growth ring patterns. This work approaches the vegetation development and evolutionary significances of the wood taxa and their relatives, and provides clues for the further understanding of the diversity of the Jurassic Yanliao Flora in East Asia. Keywords: Fossil wood, Diversity, Evolution, Tiaojishan Formation, Jurassic 1 Introduction 2004;Wangetal.,2009). Among these localities, western Fossil floras are a significant record for the vegetation Liaoning is a well-known fossil Lagerstätte with diverse and for the palaeoenvironment reconstructions of the and well-preserved fossil plant foliages and wood (Zhang Mesozoic. -
Lessons from 20 Years of Plant Genome Sequencing: an Unprecedented Resource in Need of More Diverse Representation
bioRxiv preprint doi: https://doi.org/10.1101/2021.05.31.446451; this version posted May 31, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Lessons from 20 years of plant genome sequencing: an unprecedented resource in need of more diverse representation Authors: Rose A. Marks1,2,3, Scott Hotaling4, Paul B. Frandsen5,6, and Robert VanBuren1,2 1. Department of Horticulture, Michigan State University, East Lansing, MI 48824, USA 2. Plant Resilience Institute, Michigan State University, East Lansing, MI 48824, USA 3. Department of Molecular and Cell Biology, University of Cape Town, Rondebosch 7701, South Africa 4. School of Biological Sciences, Washington State University, Pullman, WA, USA 5. Department of Plant and Wildlife Sciences, Brigham Young University, Provo, UT, USA 6. Data Science Lab, Smithsonian Institution, Washington, DC, USA Keywords: plants, embryophytes, genomics, colonialism, broadening participation Correspondence: Rose A. Marks, Department of Horticulture, Michigan State University, East Lansing, MI 48824, USA; Email: [email protected]; Phone: (603) 852-3190; ORCID iD: https://orcid.org/0000-0001-7102-5959 Abstract The field of plant genomics has grown rapidly in the past 20 years, leading to dramatic increases in both the quantity and quality of publicly available genomic resources. With an ever- expanding wealth of genomic data from an increasingly diverse set of taxa, unprecedented potential exists to better understand the evolution and genome biology of plants. -
A Visual Guide to Collecting Plant Tissues for DNA
A visual guide to collecting plant tissues for DNA Collecting kit checklist Silica gel1 Permanent marker and pencil Resealable bags, airtight plastic container Razor blade / Surgical scissors Empty tea bags or coffee filters Ethanol and paper tissue or ethanol wipes Tags or jewellers tags Plant press and collecting book 1. Selection and preparation of fresh plant tissue: Sampling avoided. Breaking up leaf material will bruise the plant tissue, which will result in enzymes being released From a single plant, harvest 3 – 5 mature leaves, or that cause DNA degradation. Ideally, leaf material sample a piece of a leaf, if large (Picture A). Ideally should be cut into smaller fragments with thick a leaf area of 5 – 10 cm2 should be enough, but this midribs being removed (Picture C). If sampling robust amount should be adjusted if the plant material is leaf tissue (e.g. cycads, palms), use a razor blade or rich in water (e.g. a succulent plant). If leaves are surgical scissors (Picture D). small (e.g. ericoid leaves), sample enough material to equate a leaf area of 5 – 10 cm2. If no leaves are Succulent plants available, other parts can be sampled such as leaf buds, flowers, bracts, seeds or even fresh bark. If the If the leaves are succulent, use a razor blade to plant is small, select the biggest specimen, but never remove epidermal slices or scoop out parenchyma combine tissues from different individuals. tissue (Picture E). Cleaning Ideally, collect clean fresh tissues, however if the leaf or plant material is dirty or shows potential contamination (e.g. -
JUDD W.S. Et. Al. (2002) Plant Systematics: a Phylogenetic Approach. Chapter 7. an Overview of Green
UNCORRECTED PAGE PROOFS An Overview of Green Plant Phylogeny he word plant is commonly used to refer to any auto- trophic eukaryotic organism capable of converting light energy into chemical energy via the process of photosynthe- sis. More specifically, these organisms produce carbohydrates from carbon dioxide and water in the presence of chlorophyll inside of organelles called chloroplasts. Sometimes the term plant is extended to include autotrophic prokaryotic forms, especially the (eu)bacterial lineage known as the cyanobacteria (or blue- green algae). Many traditional botany textbooks even include the fungi, which differ dramatically in being heterotrophic eukaryotic organisms that enzymatically break down living or dead organic material and then absorb the simpler products. Fungi appear to be more closely related to animals, another lineage of heterotrophs characterized by eating other organisms and digesting them inter- nally. In this chapter we first briefly discuss the origin and evolution of several separately evolved plant lineages, both to acquaint you with these important branches of the tree of life and to help put the green plant lineage in broad phylogenetic perspective. We then focus attention on the evolution of green plants, emphasizing sev- eral critical transitions. Specifically, we concentrate on the origins of land plants (embryophytes), of vascular plants (tracheophytes), of 1 UNCORRECTED PAGE PROOFS 2 CHAPTER SEVEN seed plants (spermatophytes), and of flowering plants dons.” In some cases it is possible to abandon such (angiosperms). names entirely, but in others it is tempting to retain Although knowledge of fossil plants is critical to a them, either as common names for certain forms of orga- deep understanding of each of these shifts and some key nization (e.g., the “bryophytic” life cycle), or to refer to a fossils are mentioned, much of our discussion focuses on clade (e.g., applying “gymnosperms” to a hypothesized extant groups. -
X. the Conifers and Ginkgo
X. The Conifers and Ginkgo Now we turn our attention to the Coniferales, another great assemblage of seed plants. First let's compare the conifers with the cycads: Cycads Conifers few apical meristems per plant many apical meristems per plant leaves pinnately divided leaves undivided wood manoxylic wood pycnoxylic seeds borne on megaphylls seeds borne on stems We should also remember that these two groups have a lot in common. To begin with, they are both groups of woody seed plants. They are united by a small set of derived features: 1) the basic structure of the stele (a eustele or a sympodium, two words for the same thing) and no leaf gaps 2) the design of the apical meristem (many initials, subtended by a slowly dividing group of cells called the central mother zone) 3) the design of the tracheids (circular-bordered pits with a torus) We have three new seed plant orders to examine this week: A. Cordaitales This is yet another plant group from the coal forest. (Find it on the Peabody mural!) The best-known genus, Cordaites, is a tree with pycnoxylic wood bearing leaves up to about a foot and a half long and four inches wide. In addition, these trees bore sporangia (micro- and mega-) in strobili in the axils of these big leaves. The megasporangia were enclosed in ovules. Look at fossils of leaves and pollen-bearing shoots of Cordaites. The large, many-veined megaphylls are ancestral to modern pine needles; the shoots are ancestral to pollen-bearing strobili of modern conifers. 67 B. -
Fundamentals of Palaeobotany Fundamentals of Palaeobotany
Fundamentals of Palaeobotany Fundamentals of Palaeobotany cuGU .叮 v FimditLU'φL-EjAA ρummmm 吋 eαymGfr 伊拉ddd仇側向iep M d、 況 O C O W Illustrations by the author uc削 ∞叩N Nn凹創 刊,叫MH h 咀 可 白 a aEE-- EEA First published in 1987 by Chapman αndHallLtd 11 New Fetter Lane, London EC4P 4EE Published in the USA by Chα~pman and H all 29 West 35th Street: New Yo地 NY 10001 。 1987 S. V. M秒len Softcover reprint of the hardcover 1st edition 1987 ISBN-13: 978-94-010-7916-7 e-ISBN-13: 978-94-009-3151-0 DO1: 10.1007/978-94-009-3151-0 All rights reserved. No part of this book may be reprinted, or reproduced or utilized in any form or by any electronic, mechanical or other means, now known or hereafter invented, including photocopying and recording, or in any information storage and retrieval system, without permission in writing from the publisher. British Library Cataloguing in Publication Data Mey凹, Sergei V. Fundamentals of palaeobotany. 1. Palaeobotany I. Title 11. Osnovy paleobotaniki. English 561 QE905 Library 01 Congress Catα loging in Publication Data Mey凹, Sergei Viktorovich. Fundamentals of palaeobotany. Bibliography: p. Includes index. 1. Paleobotany. I. Title. QE904.AIM45 561 8ι13000 Contents Foreword page xi Introduction xvii Acknowledgements xx Abbreviations xxi 1. Preservation 抄'pes αnd techniques of study of fossil plants 1 2. Principles of typology and of nomenclature of fossil plants 5 Parataxa and eutaxa S Taxa and characters 8 Peculiarity of the taxonomy and nomenclature of fossil plants 11 The binary (dual) system of fossil plants 12 The reasons for the inflation of generic na,mes 13 The species problem in palaeobotany lS The polytypic concept of the species 17 Assemblage-genera and assemblage-species 17 The cladistic methods 18 3. -
Jurassic Flora of Cape 1,Isburne Alaska
DEPARTMENT OF THE INTERIOR UNITED STATES GEOLOGICAL SURVEY GEORGE OTIS SMITH, DIRECTOR THE JURASSIC FLORA OF CAPE 1,ISBURNE ALASKA F. H. KNOWLTON Publishecl January 28, 1914 PART D OF PROFESSIONAL PAPER 85, "CONTRIBUTIONS TO GENERAL GEOLOGY 1913" WASHINGTON GOVERNMENT PRINTING OFFICE 1914 CONTENTS. Page . Introduction ............................................................................................ 39 The Corwin formation ..................................................................................... 39 Plant collections ......................................................................................... 40 Age of the plant-bearing beds ............................................................................. 41 Distribution of Jurassic floras ............................................................................. 43 Geographicrange .................................................................................... 43 Means of dispersal ................................................................................... 45 Avenues of dispersal ................................................................................. 45 Probable climatic conditions .......................................................................... 46 .The flora ................................................................................................ 46 ILLUSTRATIONS. Page . PLATESV-VIII . Jurassic flora of Cape Lisburne, Alaska .................................................... 57-64 THE' JUR,ASSIC FLORA OF CAPE -
Gymnosperms on the EDGE Félix Forest1, Justin Moat 1,2, Elisabeth Baloch1, Neil A
www.nature.com/scientificreports OPEN Gymnosperms on the EDGE Félix Forest1, Justin Moat 1,2, Elisabeth Baloch1, Neil A. Brummitt3, Steve P. Bachman 1,2, Stef Ickert-Bond 4, Peter M. Hollingsworth5, Aaron Liston6, Damon P. Little7, Sarah Mathews8,9, Hardeep Rai10, Catarina Rydin11, Dennis W. Stevenson7, Philip Thomas5 & Sven Buerki3,12 Driven by limited resources and a sense of urgency, the prioritization of species for conservation has Received: 12 May 2017 been a persistent concern in conservation science. Gymnosperms (comprising ginkgo, conifers, cycads, and gnetophytes) are one of the most threatened groups of living organisms, with 40% of the species Accepted: 28 March 2018 at high risk of extinction, about twice as many as the most recent estimates for all plants (i.e. 21.4%). Published: xx xx xxxx This high proportion of species facing extinction highlights the urgent action required to secure their future through an objective prioritization approach. The Evolutionary Distinct and Globally Endangered (EDGE) method rapidly ranks species based on their evolutionary distinctiveness and the extinction risks they face. EDGE is applied to gymnosperms using a phylogenetic tree comprising DNA sequence data for 85% of gymnosperm species (923 out of 1090 species), to which the 167 missing species were added, and IUCN Red List assessments available for 92% of species. The efect of diferent extinction probability transformations and the handling of IUCN data defcient species on the resulting rankings is investigated. Although top entries in our ranking comprise species that were expected to score well (e.g. Wollemia nobilis, Ginkgo biloba), many were unexpected (e.g. -
Fossil and Living Cycads Say No More Megasporophylls
hology orp a Miao et al., J Morphol Anat 2017, 1:2 nd M f A o n l a a t n o r m u y o J Journal of Morphology and Anatomy Research Article Article Open Access Fossil and Living Cycads Say "No More Megasporophylls" Yuyan Miao1,2, Zhong-Jian Liu3, Meina Wang3,4 and Xin Wang5* 1Beijing Museum of Natural History, Beijing, China 2State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences (Wuhan), Wuhan, China 3Shenzhen Key Laboratory for Orchid Conservation and Utilization, National Orchid Conservation Center of China and Orchid Conservation and Research Center of Shenzhen, Shenzhen, China 4College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, China 5CAS Key Laboratory of Economic Stratigraphy and Paleogeography, Nanjing Institute of Geology and Palaeontology, Nanjing, China Abstract The origins of angiosperms and cycads are still mysterious. To understand the evolution of these groups as well as other gymnosperms it was impossible without mentioning a frequently used term “megasporophyll”. “Megasporophyll” is a concept that has been used widely in botany. This term is more or less related with the famous saying “Alles ist Blatt” by Goethe. This term became popular since Arber and Parkin hypothesized that the carpels in the Magnoliales were equivalent to and derived from former foliar parts bearing ovules along their margins (“megasporophyll”). Many botanists uncritically called the parts in all the reproductive organs of seed plants as “sporophylls”, no matter what they actually saw in the plants. However, the fact is that none of the reproductive parts (fossil or living), except those in the Cycadales, are foliar or leaf-like. -
Directorate for Biological Sciences Emerging Frontiers Theoretical
Directorate for Biological Sciences Emerging Frontiers Theoretical Biology Proposal Classification Worksheet In each category, please choose the most specific descriptors. CATEGORY I: INVESTIGATOR STATUS (Select ONE) Beginning Investigator - No previous Federal support as PI or Co-PI, excluding fellowships, dissertations, planning grants, etc. Prior Federal support only Current Federal support only Current & prior Federal support CATEGORY II: FIELDS OF SCIENCE OTHER THAN BIOLOGY INVOLVED IN THIS RESEARCH (Select 1 to 3) Astronomy Engineering Psychology Chemistry Mathematics Social Sciences Computer Science Physics None of the Above Earth Science CATEGORY III: SUBSTANTIVE AREA (No selection required) CATEGORY IV: INFRASTRUCTURE (No selection required) CATEGORY V: HABITAT (No selection required) CATEGORY VI: GEOGRAPHIC AREA OF THE RESEARCH (No selection required) CATEGORY VII: CLASSIFICATION OF ORGANISMS (Select 1 to 4) VIRUSES Chytridiomycota Anthocerotae (Hornworts) Bacterial Mitosporic Fungi Hepaticae (Liverworts) Plant Oomycota Musci (Mosses) Animal Yeasts VASCULAR PLANTS PROKARYOTES Zygomycota FERNS & FERN ALLIES GYMNOSPERMS Archaebacteria LICHENS Cyanobacteria SLIME MOLDS Coniferales (Conifers) Cycadales (Cycads) Eubacteria ALGAE Ginkgoales (Ginkgo) PROTISTA (PROTOZOA) Bacillariophyta (Diatoms) Gnetales (Gnetophytes) Amoebae Charophyta ANGIOSPERMS Apicomplexa Chlorophyta Monocots Ciliophora Chrysophyta Arecaceae (Palmae) Flagellates Dinoflagellata Cyperaceae Foraminifera Euglenoids Liliaceae Microspora Phaeophyta Orchidaceae Radiolaria -
Parallel Evolution of Highly Conserved Plastid Genome Architecture in Red Seaweeds and Seed Plants
Lee et al. BMC Biology (2016) 14:75 DOI 10.1186/s12915-016-0299-5 RESEARCH ARTICLE Open Access Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants JunMo Lee1, Chung Hyun Cho1, Seung In Park1, Ji Won Choi1, Hyun Suk Song1, John A. West2, Debashish Bhattacharya3† and Hwan Su Yoon1*† Abstract Background: The red algae (Rhodophyta) diverged from the green algae and plants (Viridiplantae) over one billion years ago within the kingdom Archaeplastida. These photosynthetic lineages provide an ideal model to study plastid genome reduction in deep time. To this end, we assembled a large dataset of the plastid genomes that were available, including 48 from the red algae (17 complete and three partial genomes produced for this analysis) to elucidate the evolutionary history of these organelles. Results: We found extreme conservation of plastid genome architecture in the major lineages of the multicellular Florideophyceae red algae. Only three minor structural types were detected in this group, which are explained by recombination events of the duplicated rDNA operons. A similar high level of structural conservation (although with different gene content) was found in seed plants. Three major plastid genome architectures were identified in representatives of 46 orders of angiosperms and three orders of gymnosperms. Conclusions: Our results provide a comprehensive account of plastid gene loss and rearrangement events involving genome architecture within Archaeplastida and lead to one over-arching conclusion: from an ancestral pool of highly rearranged plastid genomes in red and green algae, the aquatic (Florideophyceae) and terrestrial (seed plants) multicellular lineages display high conservation in plastid genome architecture. -
Ginkgoales Dr Moni Kumari Date: 28 and 29Th September B.Sc 2Nd Year
Ginkgoales Dr Moni Kumari Date: 28 and 29th September B.Sc 2nd Year PG Botany Department Gaya College, Gaya Ginkgoales is a gymnosperm order containing only one extant species: Ginkgo biloba, the ginkgo tree It is classified in its Division: Ginkgophyta Class: Ginkgoopsida Order: Ginkgoales Family: Ginkgoaceae Genus: Ginkgo The only extant species within this group Ginkgo biloba is a highly adaptable plant that can grow in almost any temperate or Mediterranean climate. Resistant to pollution and pests. Long lived due to a beneficial combination of disease-resistant characteristics It can grow up to 30 meters tall and can live for a millenium. It is also well-known for its unique seeds, which have long been used as a food source in Asia. Cultivated predominantly in China Parts of the ginkgo tree are commonly added to foods and drinks or taken as a supplement due to its desirable health benefits. Some old ginkgoes produce aerial roots, known as chichi (Japanese; "nipples") or zhong-ru (Mandarin Chinese), which form on the undersides of large branches and grow downwards. Chichi growth is very slow, and may take hundreds of years to occur Ginkgoales was, however, very abundantly represented in the world by several species of about 16 genera during the Triassic period of Mesozoic age, i.e. about 200,000,000 years ago. Today, all the genera, except Ginkgo biloba, are extinct. Due to the presence of a number of primitive characters, as well as because of its long geological records, Ginkgo is called a “living fossil”. Details of the geological history of Ginkgoales indicate that its members started appearing on the earth during Permian Abundance worldwide distribution during Triassic and Jurassic periods of Mesozoic age Started fading out of existence during Cretaceous Now represented only in some parts of Southern and Eastern China by only one living member i.e.