Plant Ecology and Evolution 152 (3): 507–520, 2019 https://doi.org/10.5091/plecevo.2019.1583 REGULAR PAPER Molecular phylogeny of Artemisia (Asteraceae-Anthemideae) with emphasis on undescribed taxa from Gilgit-Baltistan (Pakistan) based on nrDNA (ITS and ETS) and cpDNA (psbA-trnH) sequences Adil Hussain1,*, Daniel Potter2, Sangtae Kim3, Muhammad Q. Hayat4 & Syed A.I. Bokhari1 1Department of Biological Sciences, International Islamic University Islamabad, 44000 Pakistan 2Department of Plant Sciences, College of Agricultural and Environmental Sciences, University of California Davis, 95616 USA 3School of Biological Sciences and Chemistry, Sungshin Women’s University, Korea 4Department of Plant Biotechnology, Atta-ur-Rahman School of Applied Biosciences, National University of Sciences and Technology Islamabad, 44000 Pakistan *Corresponding author:
[email protected] Background – Gilgit-Baltistan, the Northeast region of Pakistan, is well known for its floristic diversity, including members of the genus Artemisia. Artemisia is a large, taxonomically complex genus including ~500 species of both herbs and shrubs. This study was conducted to determine the phylogenetic position of ten undescribed Artemisia taxa from northern Pakistan, using nrDNA internal transcribed spacer (ITS), external transcribed spacer (ETS) and cpDNA intergenic spacer (psbA-trnH) regions. Methods – The phylogenetic relationships of 28 taxa of Artemisia using separate and combined data sets of sequences of three markers (ITS, ETS and psbA-trnH) were analysed with maximum parsimony, maximum likelihood, and Bayesian approaches. Key results – The results resolve northeastern Pakistani Artemisia, which represent five morphologically defined subgenera, into ten major clades. Subgenera Artemisia and Absinthium are shown to be polyphyletic, while Dracunculus, Pacifica and Tridentatae appear monophyletic.