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An in Silico Study of the Ligand Binding to Human Cytochrome P450 2D6
AN IN SILICO STUDY OF THE LIGAND BINDING TO HUMAN CYTOCHROME P450 2D6 Sui-Lin Mo (Doctor of Philosophy) Discipline of Chinese Medicine School of Health Sciences RMIT University, Victoria, Australia January 2011 i Declaration I hereby declare that this submission is my own work and to the best of my knowledge it contains no materials previously published or written by another person, or substantial proportions of material which have been accepted for the award of any other degree or diploma at RMIT university or any other educational institution, except where due acknowledgment is made in the thesis. Any contribution made to the research by others, with whom I have worked at RMIT university or elsewhere, is explicitly acknowledged in the thesis. I also declare that the intellectual content of this thesis is the product of my own work, except to the extent that assistance from others in the project‘s design and conception or in style, presentation and linguistic expression is acknowledged. PhD Candidate: Sui-Lin Mo Date: January 2011 ii Acknowledgements I would like to take this opportunity to express my gratitude to my supervisor, Professor Shu-Feng Zhou, for his excellent supervision. I thank him for his kindness, encouragement, patience, enthusiasm, ideas, and comments and for the opportunity that he has given me. I thank my co-supervisor, A/Prof. Chun-Guang Li, for his valuable support, suggestions, comments, which have contributed towards the success of this thesis. I express my great respect to Prof. Min Huang, Dean of School of Pharmaceutical Sciences at Sun Yat-sen University in P.R.China, for his valuable support. -
Science Based Authentication of Dietary Supplements
University of Mississippi eGrove Electronic Theses and Dissertations Graduate School 2010 Science Based Authentication of Dietary Supplements: Studies on the Chemical Constituents, Analytical Method and Biological Activities of Scutellaria Spp and Pfaffiaaniculata P Jing Li Follow this and additional works at: https://egrove.olemiss.edu/etd Part of the Plant Sciences Commons Recommended Citation Li, Jing, "Science Based Authentication of Dietary Supplements: Studies on the Chemical Constituents, Analytical Method and Biological Activities of Scutellaria Spp and Pfaffiaaniculata P " (2010). Electronic Theses and Dissertations. 179. https://egrove.olemiss.edu/etd/179 This Dissertation is brought to you for free and open access by the Graduate School at eGrove. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of eGrove. For more information, please contact [email protected]. SCIENCE BASED AUTHENTICATION OF DIETARY SUPPLEMENTS ---STUDIES ON THE CHEMICAL CONSTITUENTS, ANALYTICAL METHOD AND BIOLOGICAL ACTIVITIES OF SCUTELLARIA SPP AND PFAFFIA PANICULATA KUNTZE A Dissertation presented in partial fulfillment of requirements for the degree of Doctor of Philosophy in the Department of Pharmacognosy The University of Mississippi JING LI Nov. 2010 Copyright © 2010 by Jing Li All rights reserved ii ABSTRACT During the last decade, the use of herbal medicine has expanded globally and gained popularity. With the tremendous expansion in the use of herbal medicine worldwide, safety and efficacy as well as quality control of herbal medicines have become more and more issues of concern for both health authorities and the public. Although herbal medicine has been in use for hundreds to thousands years, very limited science-based data exist to explicit its chemical constituents, pharmacological activities and toxicity. -
Oral Care Compositions Containing Free-B-Ring Flavonoids and Flavans
(19) & (11) EP 2 308 565 A2 (12) EUROPEAN PATENT APPLICATION (43) Date of publication: (51) Int Cl.: 13.04.2011 Bulletin 2011/15 A61Q 11/02 (2006.01) A61Q 11/00 (2006.01) A61K 8/19 (2006.01) A61K 8/21 (2006.01) (2006.01) (2006.01) (21) Application number: 11151708.2 A61K 8/25 A61K 8/27 A61K 8/29 (2006.01) A61K 8/49 (2006.01) (2006.01) (2006.01) (22) Date of filing: 21.12.2005 A61K 8/81 A61P 29/00 (84) Designated Contracting States: • Viscio, David AT BE BG CH CY CZ DE DK EE ES FI FR GB GR Monmouth Junction, NJ 08852 (US) HU IE IS IT LI LT LU LV MC NL PL PT RO SE SI • Gaffar, Abdul SK TR Princeton, NJ 08540 (US) • Mello, Sarita V. (30) Priority: 22.12.2004 US 639331 P Somerset, NJ 08873 (US) 12.12.2005 US 301098 • Arvanitidou, Evangelia S. Princeton, NJ 08540 (US) (62) Document number(s) of the earlier application(s) in • Prencipe, Michael accordance with Art. 76 EPC: West Windsor, NJ 08550 (US) 05855133.4 / 1 827 608 (74) Representative: Jenkins, Peter David (71) Applicant: Colgate-Palmolive Company Page White & Farrer New York NY 10022-7499 (US) Bedford House John Street (72) Inventors: London WC1N 2BF (GB) • Xu, Guofeng Princeton, NJ 08542 (US) Remarks: • Boyd, Thomas, J. This application was filed on 21-01-2011 as a Metuchen, NJ 08840 (US) divisional application to the application mentioned • Hao, Zhigang under INID code 62. North Brunswick, NJ 08902 (US) (54) ORAL CARE COMPOSITIONS CONTAINING FREE-B-RING FLAVONOIDS AND FLAVANS (57) Oral care compositions containing: a free-B-ring flavonoid and a flavan; as well as at least one bioavailability- enhancing agent are provided. -
A Review of the Most Important Natural Antioxidants and Effective Medicinal Plants in Traditional Medicine on Prostate Cancer and Its Disorders
J Herbmed Pharmacol. 2020; 9(2): x-x. http://www.herbmedpharmacol.com doi: 10.15171/jhp.2020.xx Journal of Herbmed Pharmacology A review of the most important natural antioxidants and effective medicinal plants in traditional medicine on prostate cancer and its disorders Gholam Basati1 ID , Pardis Ghanadi2, Saber Abbaszadeh3* ID 1Biotechnology and Medicinal Plants Research Center, Ilam University of Medical Sciences, Ilam, Iran 2Medical Student, Lorestan University of Medical Sciences, Khorramabad, Iran. 3Student Research Committee, Lorestan University of Medical Sciences, Khorramabad, Iran A R T I C L E I N F O A B S T R A C T Article Type: Herbal plants can be used to treat and prevent life-threatening diseases, such as prostate Review cancer, infections and other diseases. The findings from traditional medicine and the use of medicinal plants can help control and treat most problems due to prostate diseases. The Article History: aim of this study was to identify and report the most important medicinal plants that affect Received: 19 July 2019 prostate disorders. Based on the results of the review of numerous articles indexed in the Accepted: 28 October 2019 databases ISI, Scopus, PubMed, Google Scholar, etc., a number of plants have been reported to be used in the treatment and prevention of diseases, inflammation, infection, and cancer of Keywords: the prostate gland. The plants include Panax ginseng, Arum palaestinum, Melissa officinalis, Prostate cancer Syzygium paniculatum, Coptis chinensis, Embelia ribes, Scutellaria baicalensis, Tripterygium Inflammation wilfordii, Salvia triloba, Ocimum tenuiflorum, Psidium guajava, Ganoderma lucidum, Litchi Prostatitis chinensis, Saussurea costus, Andrographis paniculata, Magnolia officinalis and Prunus Medicinal plants africana. -
Or Blood Endothelial Disintegration Induced by Colon Cancer Spheroids SW620
molecules Article Flavonoids Distinctly Stabilize Lymph Endothelial- or Blood Endothelial Disintegration Induced by Colon Cancer Spheroids SW620 1,2, 1,2, 1,2, 1 2 Julia Berenda y, Claudia Smöch y, Christa Stadlbauer y, Eva Mittermair , Karin Taxauer , Nicole Huttary 2, Georg Krupitza 2 and Liselotte Krenn 1,* 1 Department of Pharmacognosy, Faculty of Life Sciences, University of Vienna, A-1090 Vienna, Austria; [email protected] (J.B.); [email protected] (C.S.); [email protected] (C.S.); [email protected] (E.M.) 2 Department of Pathology, Medical University of Vienna, A-1090 Vienna, Austria; [email protected] (K.T.); [email protected] (N.H.); [email protected] (G.K.) * Correspondence: [email protected] These authors contributed equally to this work. y Received: 16 April 2020; Accepted: 28 April 2020; Published: 29 April 2020 Abstract: The health effects of plant phenolics in vegetables and other food and the increasing evidence of the preventive potential of flavonoids in “Western Diseases” such as cancer, neurodegenerative diseases and others, have gained enormous interest. This prompted us to investigate the effects of 20 different flavonoids of the groups of flavones, flavonols and flavanones in 3D in vitro systems to determine their ability to inhibit the formation of circular chemorepellent induced defects (CCIDs) in monolayers of lymph- or blood-endothelial cells (LECs, BECs; respectively) by 12(S)-HETE, which is secreted by SW620 colon cancer spheroids. Several compounds reduced the spheroid-induced defects of the endothelial barriers. In the SW620/LEC model, apigenin and luteolin were most active and acacetin, nepetin, wogonin, pinocembrin, chrysin and hispidulin showed weak effects. -
A Review of the Most Important Natural Antioxidants and Effective Medicinal Plants in Traditional Medicine on Prostate Cancer and Its Disorders
J Herbmed Pharmacol. 2020; 9(2): 112-120. http://www.herbmedpharmacol.com doi: 10.34172/jhp.2020.15 Journal of Herbmed Pharmacology A review of the most important natural antioxidants and effective medicinal plants in traditional medicine on prostate cancer and its disorders Gholam Basati1 ID , Pardis Ghanadi2, Saber Abbaszadeh3* ID 1Biotechnology and Medicinal Plants Research Center, Ilam University of Medical Sciences, Ilam, Iran 2Medical Student, Lorestan University of Medical Sciences, Khorramabad, Iran. 3Student Research Committee, Lorestan University of Medical Sciences, Khorramabad, Iran A R T I C L E I N F O A B S T R A C T Article Type: Herbal plants can be used to treat and prevent life-threatening diseases, such as prostate Review cancer, infections and other diseases. The findings from traditional medicine and the use of medicinal plants can help control and treat most problems due to prostate diseases. The Article History: aim of this study was to identify and report the most important medicinal plants that affect Received: 19 July 2019 prostate disorders. Based on the results of the review of numerous articles indexed in the Accepted: 28 October 2019 databases ISI, Scopus, PubMed, Google Scholar, etc., a number of plants have been reported to be used in the treatment and prevention of diseases, inflammation, infection, and cancer of Keywords: the prostate gland. The plants include Panax ginseng, Arum palaestinum, Melissa officinalis, Prostate cancer Syzygium paniculatum, Coptis chinensis, Embelia ribes, Scutellaria baicalensis, Tripterygium Inflammation wilfordii, Salvia triloba, Ocimum tenuiflorum, Psidium guajava, Ganoderma lucidum, Litchi Prostatitis chinensis, Saussurea costus, Andrographis paniculata, Magnolia officinalis and Prunus Medicinal plants africana. -
UNITED STATES PATENT OFFICE 2,681,907 ISOATION of FILAWONOD COMPOUNDS Simon H
Patented June 22, 1954 2,681,907 UNITED STATES PATENT OFFICE 2,681,907 ISOATION OF FILAWONOD COMPOUNDS Simon H. Wender, Norman, Okla., assignor to the United States of America as represented by the United States Atomic Energy Commission No Drawing. Application April 22, 1952, Serial No. 283,749 10 Claims. (C. 260-210) 1. 2 My invention relates to a method of purifying vide an improved method for isolating flavonoid flavonoids and more particularly to the recovery compounds. of quantities of substantially pure flavonoids Another object is to provide a method for iso from their naturally occurring source materials. lating relatively large quantities of a flavonoid The flavonoid compounds comprise a very in compound in Substantially pure form. portant class of plant pigments which are widely Still another object is to provide an improved distributed in the vegetable kingdom. Interest proceSS for Separating relatively pure flavonoids is shown in a number of these compounds due to in concentrated form from the original solid their vitamin-like action in increasing the resist source materials. ance of blood capillaries to rupture. The term O Further objects and advantages of my inven “vitamin P' is sometimes applied to flavonoids tion will be apparent from the following descrip having this property. Rutin, a member of this tion. class of plant pigments enjoys widespread use as In accordance with my invention, substantially a drug for blood vessel treatment. In addition, pure flavonoids may be separated in relatively it is anticipated that flavonoids will be of use in concentrated form from extraneous organic and the control of radiation injury, and considerable inoi'ganic impurities by preparing a water ex experimental effort is being expended in this tract of same, contacting said Water extract with direction. -
Subject Index
Subject Index Absolute configuration 28, 30, 267 A-Ring protons (NMR), C-6 and C-8 261-265 Acacetin 43, 48, 55, 57 -- -,C-5 264 -, UV spectra of 90 Artemetin 43, 56, 60, 277 Acacetin 7-0-glucoside 43,55, 58 -, NMR spectrum of 308 - -, UV spectra of 91 -, UV spectra of 155 Acetylated aglycone 31,45,271 Astilbin 40, 170, 172, 174, 278 Acetylation of TMS ethers 255, 259 -, NMRspectrum of 327 7-Acetyloxy-6-carbomethoxyisoflavone 277 -, UV spectra of 255 -, NMR spectrum of 312 Aurone 40 Acid hydrolysis 24 Aurones, NMR spectra index 274 Afrormosin 14, 166, 169, 173,278 -, -- interpretation 254--272 -, NMR spectrum of 320 -, numbering system 13, 227 -, structure of 20 -, paper chromatography 13 -, UV spectra of 195 -, thin-layer chromatography 22 Aglycone, degradation 28 -, UV spectra index 230 -, identification 27 -, UV spectra interpretation 227,230 -, methylation and acetylation 31,45 - (see also UV and NMR) Baicalein (5,6,7-trihydroxyflavone) 43,45,57 Aluminum chloride for UV spectroscopy 35 - -, UV spectra of 77 --- -, chalcones and aurones 229 Baicalin (5,6,7-trihydroxyflavone 7-0-glucuronide) --- -,5-deoxy-7-hydroxyflavones 53 43, 55, 57 --- -, flavones and flavonols 50-56 -- -, UV spectra of 78 --- -, isoflavones, flavanones, and Baker-Venkataraman transformation 28 dihydroflavonols 171 Bands land II 41 Amentoflavone 43,46,49,55,58,279 -- -, chalcones and aurones 227 -, NMR spectrum of 343 -- -, flavones and flavonols 42 -, UV spectra of 110 -- -, isoflavones, flavanones and Ammonia, paper chromatographie spot detection dihydroflavonols -
A Molecular Docking Study of Phytochemical Estrogen Mimics from Dietary Herbal Supplements Chelsea N Powers and William N Setzer*
Powers and Setzer In Silico Pharmacology (2015) 3:4 DOI 10.1186/s40203-015-0008-z ORIGINAL RESEARCH Open Access A molecular docking study of phytochemical estrogen mimics from dietary herbal supplements Chelsea N Powers and William N Setzer* Abstract Purpose: The purpose of this study is to use a molecular docking approach to identify potential estrogen mimics or anti-estrogens in phytochemicals found in popular dietary herbal supplements. Methods: In this study, 568 phytochemicals found in 17 of the most popular herbal supplements sold in the United States were built and docked with two isoforms of the estrogen receptor, ERα and ERβ (a total of 27 different protein crystal structures). Results: The docking results revealed six strongly docking compounds in Echinacea, three from milk thistle (Silybum marianum), three from Gingko biloba, one from Sambucus nigra, none from maca (Lepidium meyenii), five from chaste tree (Vitex agnus-castus), two from fenugreek (Trigonella foenum-graecum), and two from Rhodiola rosea. Notably, of the most popular herbal supplements for women, there were numerous compounds that docked strongly with the estrogen receptor: Licorice (Glycyrrhiza glabra) had a total of 26 compounds strongly docking to the estrogen receptor, 15 with wild yam (Dioscorea villosa), 11 from black cohosh (Actaea racemosa), eight from muira puama (Ptychopetalum olacoides or P. uncinatum), eight from red clover (Trifolium pratense), three from damiana (Turnera aphrodisiaca or T. diffusa), and three from dong quai (Angelica sinensis). Of possible concern were the compounds from men’s herbal supplements that exhibited strong docking to the estrogen receptor: Gingko biloba had three compounds, gotu kola (Centella asiatica) had two, muira puama (Ptychopetalum olacoides or P. -
Food Flavonoid Ligand Structure/Estrogen Receptor-Α Affinity
Food and Chemical Toxicology 129 (2019) 328–336 Contents lists available at ScienceDirect Food and Chemical Toxicology journal homepage: www.elsevier.com/locate/foodchemtox Food flavonoid ligand structure/estrogen receptor-α affinity relationships – toxicity or food functionality? T ∗ Hui Ye, Ian C. Shaw Human Toxicology Research Group, School of Physical and Chemical Sciences, University of Canterbury, Private Bag 4800, Christchurch, 8140, New Zealand ARTICLE INFO ABSTRACT Keywords: In silico molecular modelling is used to study interactions between flavonoid phytoestrogens and estrogen re- Food functionality and toxicity ceptor (ER)α. Twenty flavonoids from foods were studied; e.g., genistein from soy, naringenin from grapefruit, estrogen receptor α phloretin from pears, chrysin from oyster mushrooms. These potential ligands' molecular attributes and their dietary phytoestrogen spatial arrangements that favour binding to the ligand binding cleft (LBC) of ERα are identified, and Docking binding affinity Scores calculated. The Docking Score order is the same as the estrogenicity order for 8 of the flavonoids studied structural features in detail. The number and position of flavonoid ring hydroxyls influence the Docking Scores which might relate flavonoids to ERα′s bio-activity. Hydrophobic interactions between ligands and ERα are also important; the number of rotatable CeC bonds in ligands likely affects the magnitude of hydrophobic interactions and ligand fit. Our findings suggest that flavonoids with diverse structural features could have different binding energies and binding affinities with ERα, which might confer different functionalities and toxicities. 1. Introduction separated by 9.6 Å of hydrophobicity (Brzozowski et al., 1997). Mole- cules with similar molecular attributes (i.e. estrogen mimics) activate A better understanding of the molecular mechanisms underlying ERs, but to a lesser extent than E2. -
Comprehensive Pro Ling and Characterization of the Absorbed
Comprehensive Proling and Characterization of The Absorbed Components and Metabolites in Mice Serum and Tissues Following Oral Administration of Qingfei Paidu Decoction by UHPLC-Q-Exactive-Orbitrap HRMS Wei Liu Key Laboratory of Liver and Kidney Diseases (Ministry of Education), Institute of Liver Diseases, Shanghai Key Laboratory of Traditional Chinese Clinical Medicine, Shuguang Hospital Aliated to Shanghai University of Traditional Chinese Medicine Jian Huang Institute of Interdisciplinary Integrative Medicine Research, Shanghai University of Traditional Chinese Medicine Feng Zhang Institute of Interdisciplinary Integrative Medicine Research, Shanghai University of Traditional Chinese Medicine Congcong Zhang Institute of Chinese Materia Medica, Shanghai University of Traditional Chinese Medicine Rongsheng Li Key Laboratory of Liver and Kidney Diseases (Ministry of Education), Institute of Liver Diseases, Shanghai Key Laboratory of Traditional Chinese Clinical Medicine, Shuguang Hospital Aliated to Shanghai University of Traditional Chinese Medicine Yongli Wang Institute of Chinese Materia Medica, Shanghai University of Traditional Chinese Medicine Chaoran Wang Dalian Institute of Chemical Physics, Chinese Academy of Sciences Xinmiao Liang Dalian Institute of Chemical Physics, Chinese Academy of Sciences Weidong Zhang Institute of Interdisciplinary Integrative Medicine Research, Shanghai University of Traditional Chinese Medicine Ling Yang Institute of Interdisciplinary Integrative Medicine Research, Shanghai University of Traditional -
Research Article Antioxidant and Antidiabetic Effects of Flavonoids: a Structure-Activity Relationship Based Study
Hindawi BioMed Research International Volume 2017, Article ID 8386065, 14 pages https://doi.org/10.1155/2017/8386065 Research Article Antioxidant and Antidiabetic Effects of Flavonoids: A Structure-Activity Relationship Based Study Murni Nazira Sarian,1 Qamar Uddin Ahmed,1 Siti Zaiton Mat So’ad,1 Alhassan Muhammad Alhassan,1 Suganya Murugesu,1 Vikneswari Perumal,1 Sharifah Nurul Akilah Syed Mohamad,1 Alfi Khatib,1 and Jalifah Latip2 1 Department of Pharmaceutical Chemistry, Faculty of Pharmacy, International Islamic University Malaysia (IIUM), 25200Kuantan,Pahang,Malaysia 2School of Chemical Sciences and Food Technology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia (UKM), 46300Bangi,Selangor,Malaysia Correspondence should be addressed to Qamar Uddin Ahmed; [email protected] and Jalifah Latip; [email protected] Received 23 July 2017; Revised 21 September 2017; Accepted 12 October 2017; Published 28 November 2017 Academic Editor: Isabelle Chevalot Copyright © 2017 Murni Nazira Sarian et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The best described pharmacological property of flavonoids is their capacity to act as potent antioxidant that has been reported toplay an important role in the alleviation of diabetes mellitus. Flavonoids biochemical properties are structure dependent; however, they are yet to be thoroughly understood. Hence, the main aim of this work was to investigate the antioxidant and antidiabetic properties of some structurally related flavonoids to identify key positions responsible, their correlation, and the effect of methylation and acetylation on the same properties.