RESEARCH ARTICLE Candidate Resistant Genes of Sand Pear (Pyrus pyrifolia Nakai) to Alternaria alternata Revealed by Transcriptome Sequencing Xiaoping Yang1,2, Hongju Hu2, Dazhao Yu1,3*, Zhonghai Sun2*, Xiujuan He2, Jingguo Zhang2, Qiliang Chen2, Rui Tian2, Jing Fan2 1 School of Life Sciences, Wuhan University, Wuhan, Hubei, 430072, P. R. China, 2 Research Institute of Fruit and Tea, Hubei Academy of Agricultural Science, Wuhan, Hubei, 430064, P. R. China, 3 Hubei Laboratory of Crop Diseases, Insect Pests and Weeds Control, Wuhan, Hubei, 430064, P. R. China a11111 *
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[email protected] (ZHS) Abstract Pear black spot (PBS) disease, which is caused by Alternaria alternata (Aa), is one of the OPEN ACCESS most serious diseases affecting sand pear (Pyrus pyrifolia Nakai) cultivation worldwide. To investigate the defense mechanisms of sand pear in response to Aa, the transcriptome of a Citation: Yang X, Hu H, Yu D, Sun Z, He X, Zhang J, sand pear germplasm with differential resistance to Aa was analyzed using Illumina paired- et al. (2015) Candidate Resistant Genes of Sand Pear (Pyrus pyrifolia Nakai) to Alternaria alternata end sequencing. Four libraries derived from PBS-resistant and PBS-susceptible sand pear Revealed by Transcriptome Sequencing. PLoS ONE leaves were characterized through inoculation or mock-inoculation. In total, 20.5 Gbp of 10(8): e0135046. doi:10.1371/journal.pone.0135046 sequence data and 101,632,565 reads were generated, representing 44717 genes. Editor: Ji-Hong Liu, Key Laboratory of Horticultural Approximately 66% of the genes or sequenced reads could be aligned to the pear reference Plant Biology (MOE), CHINA genome.