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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
Mechanisms of Ecosystem Stability for Kelp Beds in Urban Environments
Mechanisms of ecosystem stability for kelp beds in urban environments By Simon E Reeves November 2017 Submitted in fulfilment of the requirements for the degree of Doctor of Philosophy Institute for Marine and Antarctic Studies I DECLARATIONS This declaration certifies that: (i) This thesis contains no material that has been accepted for a degree or diploma by the University or any other institution. (ii) The work contained in this thesis, except where otherwise acknowledged, is the result of my own investigations. (iii) Due acknowledgement has been made in the text to all other material used (iv) The thesis is less than 100,000 words in length, exclusive of tables, maps, bibliographies and appendices. Signed: (Simon Reeves) Date: 1/12/2017 Statement of authority of access This thesis may be available for loan and limited copying in accordance with the Copyright Act 1968. Signed: (Simon Reeves) Date: 1/12/2017 II 20/7/18 ABSTRACT Ecologists have long been interested in determining the role biotic relationships play in natural systems. Even Darwin envisioned natural systems as "bound together by a web of complex relations”, noting how “complex and unexpected are the checks and relations between organic beings” (On the Origin of Species, 1859, pp 81-83). Any event or phenomenon that alters the implicit balance in the web of interactions, to any degree, can potentially facilitate a re-organisation in structure that can lead to a wholescale change to the stability of a natural system. As a result of the increasing diversity and intensity of anthropogenic stressors on ecosystems, previously well-understood biotic interactions and emergent ecological functions are being altered, requiring a reappraisal of their effects. -
Pacific Plate Biogeography, with Special Reference to Shorefishes
Pacific Plate Biogeography, with Special Reference to Shorefishes VICTOR G. SPRINGER m SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 367 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoo/ogy Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world cf science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
REEF FISH BIODIVERSITY on KANGAROO ISLAND Oceans of Blue Coast, Estuarine and Marine Monitoring Program
2006-2007 Kangaroo Island Natural Resources ManagementDate2007 Board Kangaroo Island Natural Resources Management Board REEF FISH BIODIVERSITYKangaroo Island Natural ON Resources KANGAROO Management ISLAND Board SEAGRASS FAUNAL BIODIVERSITYREPORT TITLE ON KI Reef Fish Biodiversity on Kangaroo Island 1 REEF FISH BIODIVERSITY ON KANGAROO ISLAND Oceans of Blue Coast, Estuarine and Marine Monitoring Program A report prepared for the Kangaroo Island Natural Resources Management Board by Daniel Brock Martine Kinloch December 2007 Reef Fish Biodiversity on Kangaroo Island 2 Oceans of Blue The views expressed and the conclusions reached in this report are those of the author and not necessarily those of persons consulted. The Kangaroo Island Natural Resources Management Board shall not be responsible in any way whatsoever to any person who relies in whole or in part on the contents of this report. Project Officer Contact Details Martine Kinloch Coast and Marine Program Manager Kangaroo Island Natural Resources Management Board PO Box 665 Kingscote SA 5223 Phone: (08) 8553 4312 Fax: (08) 8553 4399 Email: [email protected] Kangaroo Island Natural Resources Management Board Contact Details Jeanette Gellard General Manager PO Box 665 Kingscote SA 5223 Phone: (08) 8553 4340 Fax: (08) 8553 4399 Email: [email protected] © Kangaroo Island Natural Resources Management Board This document may be reproduced in whole or part for the purpose of study or training, subject to the inclusion of an acknowledgment of the source and to its not being used for commercial purposes or sale. Reproduction for purposes other than those given above requires the prior written permission of the Kangaroo Island Natural Resources Management Board. -
Relationships Between Faunal Assemblages and Habitat Types in Broke Inlet, Western Australia
Relationships between faunal assemblages and habitat types in Broke Inlet, Western Australia Submitted by James Richard Tweedley This thesis is presented for the degree of Doctor of Philosophy 2010 B.Sc (Hons) University of Portsmouth (UK) MRes University of Plymouth (UK) Declaration I declare that the information contained in this thesis is the result of my own research unless otherwise cited, and has as its main content work which has not previously been submitted for a degree at any university. __________________________________________ James Richard Tweedley Shifting Sands: The sand bar at the mouth of Broke Inlet in (top) summer and (bottom) winter 2008. Bottom photo by Bryn Farmer. Abstract The work for this thesis was undertaken in Broke Inlet, a seasonally-open estuary on the south coast of Western Australia and the only estuary in that region which is regarded as “near-pristine” (Commonwealth of Australia, 2002). The only previous seasonal studies of the environmental and biotic characteristics of this estuary involved broad-based descriptions of the trends in salinity, temperature and ichthyofaunal characteristics at a limited number of sites. Furthermore, no attempt has been made to identify statistically the range of habitats present in the nearshore and offshore waters of this system, and the extents to which the characteristics of the fish and benthic invertebrate faunas are related to habitat type. These types of data provide not only reliable inventories of the habitat and faunal characteristics of Broke Inlet, but also a potential basis for predicting the likely impact of anthropogenic and climatic changes in Broke Inlet in the future. -
(Teleostei: Pempheridae) from the Western Indian Ocean
Zootaxa 3780 (2): 388–398 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3780.2.10 http://zoobank.org/urn:lsid:zoobank.org:pub:F42C1553-10B0-428B-863E-DCA8AC35CA44 Pempheris bexillon, a new species of sweeper (Teleostei: Pempheridae) from the Western Indian Ocean RANDALL D. MOOI1,2 & JOHN E. RANDALL3 1The Manitoba Museum, 190 Rupert Ave., Winnipeg MB, R3B 0N2 Canada. E-mail: [email protected] 2Department of Biological Sciences, Biological Sciences Bldg., University of Manitoba, Winnipeg MB, R3T 2N2 Canada 3Bishop Museum, 1525 Bernice St., Honolulu, HI 96817-2704 USA. E-mail: [email protected] Abstract Pempheris bexillon new species is described from the 129 mm SL holotype and 11 paratypes (119–141 mm SL) from the Comoro Islands. Twelve other specimens have been examined from the Agaléga Islands, Mascarene Islands, and Bassas da India (Madagascar). It is differentiated from other Pempheris by the following combination of characters: a yellow dor- sal fin with a black, distal margin along its full length, broadest on anterior rays (pupil-diameter width) and gradually nar- rowing posteriorly, the last ray with only a black tip; large, deciduous cycloid scales on the flank; dark, oblong spot on the pectoral-fin base; anal fin with a dark margin; segmented anal-fin rays 38–45 (usually >40); lateral-line scales 56–65; and total gill rakers on the first arch 31–35; iris reddish-brown. Tables of standard meristic and color data for type material of all nominal species of cycloid-scaled Pempheris in the Indo-Pacific are provided. -
MORPHOMETRIC and PARASITOLOGICAL EVIDENCE for ONTOGENETIC and GEOGRAPHICAL DIETARY SHIFTS in INTERTIDAL FISHES Marcela Aldana, J
BULLETIN OF MARINE SCIENCE, 70(I): 55-74, 2002 MORPHOMETRIC AND PARASITOLOGICAL EVIDENCE FOR ONTOGENETIC AND GEOGRAPHICAL DIETARY SHIFTS IN INTERTIDAL FISHES Marcela Aldana, Jose M. Pulgar, Fernando Ogalde and F PatricioOjeda ABSTRACT Studies on the feeding ecology of intertidal fish assemblages have indicated the exist- ence of three trophic groups: herbivores, omnivores and carnivores. This classification has enabled researchers to establish some ecological relationships among their compo- nents. However, temporal and spatial variations in the use of food resources have rarely been addressed. In this study, ontogenetic and geographical variations in the diet of two intertidal fish species: Girella laevifrons and Graus nigra were evaluated through an integrative analysis of their diet, relation between intestinal length/body length, and their parasite fauna. Results of this combined analysis suggest ontogenetic and geographical variations in the diet of G. laevifrons. In G. nigra, no evidence of ontogenetic dietary shifts was found, but marked differences in diet were detected among localities. How- ever, parasitological evidence does not reflect the geographical differences in its diet. Omnivory of G. nigra at two localities (viz Caleta Errazuriz and El Tabo) may be indica- :ive of the opportunistic nature of this species related to the greater availability of nacroalgae at these localities. The assessment of intestinal length of G. nigra highlights the importance of considering macroalgal species composition, and not only their abun- dance as a group, when estimating the quality of the diet of a given fish species. In general, the geographical differences in diet, length of the intestine and parasitofauna of G. laevifrons and G. -
New Zealand Fishes a Field Guide to Common Species Caught by Bottom, Midwater, and Surface Fishing Cover Photos: Top – Kingfish (Seriola Lalandi), Malcolm Francis
New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing Cover photos: Top – Kingfish (Seriola lalandi), Malcolm Francis. Top left – Snapper (Chrysophrys auratus), Malcolm Francis. Centre – Catch of hoki (Macruronus novaezelandiae), Neil Bagley (NIWA). Bottom left – Jack mackerel (Trachurus sp.), Malcolm Francis. Bottom – Orange roughy (Hoplostethus atlanticus), NIWA. New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing New Zealand Aquatic Environment and Biodiversity Report No: 208 Prepared for Fisheries New Zealand by P. J. McMillan M. P. Francis G. D. James L. J. Paul P. Marriott E. J. Mackay B. A. Wood D. W. Stevens L. H. Griggs S. J. Baird C. D. Roberts‡ A. L. Stewart‡ C. D. Struthers‡ J. E. Robbins NIWA, Private Bag 14901, Wellington 6241 ‡ Museum of New Zealand Te Papa Tongarewa, PO Box 467, Wellington, 6011Wellington ISSN 1176-9440 (print) ISSN 1179-6480 (online) ISBN 978-1-98-859425-5 (print) ISBN 978-1-98-859426-2 (online) 2019 Disclaimer While every effort was made to ensure the information in this publication is accurate, Fisheries New Zealand does not accept any responsibility or liability for error of fact, omission, interpretation or opinion that may be present, nor for the consequences of any decisions based on this information. Requests for further copies should be directed to: Publications Logistics Officer Ministry for Primary Industries PO Box 2526 WELLINGTON 6140 Email: [email protected] Telephone: 0800 00 83 33 Facsimile: 04-894 0300 This publication is also available on the Ministry for Primary Industries website at http://www.mpi.govt.nz/news-and-resources/publications/ A higher resolution (larger) PDF of this guide is also available by application to: [email protected] Citation: McMillan, P.J.; Francis, M.P.; James, G.D.; Paul, L.J.; Marriott, P.; Mackay, E.; Wood, B.A.; Stevens, D.W.; Griggs, L.H.; Baird, S.J.; Roberts, C.D.; Stewart, A.L.; Struthers, C.D.; Robbins, J.E. -
The Intramandibular Joint in Girella: a Mechanism for Increased Force Production?
JOURNAL OF MORPHOLOGY 271:271–279 (2010) The Intramandibular Joint in Girella: A Mechanism for Increased Force Production? Lara A. Ferry-Graham1,3* and Nicolai Konow2 1California State University, Moss Landing Marine Labs, Moss Landing, California 95039 2Brown University, Ecology and Evolutionary Biology, Providence, Box G-B204, Rhode Island 02912 3CEAZA, Centro de Estudios Avanzados de Zonas Aridas (Center for Advanced Studies in Arid Zones), Universidad Cato´lica del Norte. Box 599, Benavente 980, La Serena, Chile ABSTRACT Intramandibular joints (IMJ) are novel Bellwood, 2002). This is likely due to the forces articulations between bony elements of the lower jaw required for obtaining food items many of which are that have evolved independently in multiple fish line- either tough or firmly attached to the substrate ages and are typically associated with biting herbivory. (Alfaro et al., 2001). In several reef fish lineages, This novel joint is hypothesized to function by augment- aspects of the feeding apparatus have been radically ing oral jaw expansion during mouth opening, which would increase contact between the tooth-bearing area altered for force production, either via hypertro- of the jaws and algal substratum during feeding, result- phied or via structurally altered musculature (Friel ing in more effective food removal from the substrate. and Wainwright, 1997), modified muscle attach- Currently, it is not understood if increased flexibility in ments (Vial and Ojeda, 1990; Konow and Bellwood, a double-jointed mandible also results in increased force 2005), or increased suturing and/or reinforcement generation during herbivorous biting and/or scraping. of bony elements and dentition (Tedman, 1980; Therefore, we selected the herbivore Girella laevifrons Streelman et al., 2002; Bellwood et al., 2003). -
Guía De Peces Litorales
PECES LITORALES de Chile Guía para una pesca recreativa marina sustentable Conservar las GUÍA PARA UNA PESCA RECREATIVA MARINA SUSTENTABLE tierras y aguas de las cuales depende la vida. Publicación realizada por The Nature Conservancy Este trabajo es producto de la colaboración de expertos académicos, de instituciones del estado, federaciones de pesca recreativa y ONGs. Santiago de Chile, 2020 Nature.org/LatinAmerica nature_org nature_org thenatureconservancy - 3 - GUÍA PARA UNA PESCA RECREATIVA MARINA SUSTENTABLE La pesca recreativa una actividad sustentable The Nature Conservancy (TNC) es una Organización No de Chile. Este grupo de especies incluyen especies carnívoras Gubernamental (ONG) con la misión de conservar y proteger y micro-carnívoras tales como la Vieja Negra o Mulato (Graus las aguas y tierras de las que depende la vida en las princi- nigra), Pejeperro (Semicossyphus darwini), Apañao (Hemilut- pales regiones del planeta, en línea con el desarrollo social, janus macrophthalmos) y Bilagay o Pintacha (Cheilodactylus económico y el respeto por las comunidades. En Chile y Perú, variegatus); omnívoros como el Acha (Medialuna ancietae) y el estamos trabajando en proteger y dar un uso sustentable a Baunco (Girella laevifrons), y el herbívoro Jerguilla (Aplodactylus los recursos pesqueros que son parte del ecosistema mari- punctatus), entre otros. Las especies más emblemáticas del no de la Corriente de Humboldt, especialmente de los peces litoral chileno son tres; la Vieja Negra o Mulato, el Pejeperro litorales y del hábitat marino costero que generan las algas y el Acha y son las que muestran los mayores problemas de pardas. conservación, debido a que alcanzan grandes tamaños y va- lor comercial. -
Parks Victoria Technical Series No
Deakin Research Online This is the published version: Barton, Jan, Pope, Adam and Howe, Steffan 2012, Marine protected areas of the Flinders and Twofold Shelf bioregions Parks Victoria, Melbourne, Vic. Available from Deakin Research Online: http://hdl.handle.net/10536/DRO/DU:30047221 Reproduced with the kind permission of the copyright owner. Copyright: 2012, Parks Victoria. Parks Victoria Technical Paper Series No. 79 Marine Natural Values Study (Vol 2) Marine Protected Areas of the Flinders and Twofold Shelf Bioregions Jan Barton, Adam Pope and Steffan Howe* School of Life & Environmental Sciences Deakin University *Parks Victoria August 2012 Parks Victoria Technical Series No. 79 Flinders and Twofold Shelf Bioregions Marine Natural Values Study EXECUTIVE SUMMARY Along Victoria’s coastline there are 30 Marine Protected Areas (MPAs) that have been established to protect the state’s significant marine environmental and cultural values. These MPAs include 13 Marine National Parks (MNPs), 11 Marine Sanctuaries (MSs), 3 Marine and Coastal Parks, 2 Marine Parks, and a Marine Reserve, and together these account for 11.7% of the Victorian marine environment. The highly protected Marine National Park System, which is made up of the MNPs and MSs, covers 5.3% of Victorian waters and was proclaimed in November 2002. This system has been designed to be representative of the diversity of Victoria’s marine environment and aims to conserve and protect ecological processes, habitats, and associated flora and fauna. The Marine National Park System is spread across Victoria’s five marine bioregions with multiple MNPs and MSs in each bioregion, with the exception of Flinders bioregion which has one MNP.