International Journal of Molecular Sciences Article Mitochondrial Genomes Provide Insights into the Phylogeny of Lauxanioidea (Diptera: Cyclorrhapha) Xuankun Li 1,†, Wenliang Li 2,†, Shuangmei Ding 1, Stephen L. Cameron 3, Meng Mao 4, Li Shi 5,* and Ding Yang 1,* 1 Department of Entomology, China Agricultural University, Beijing 100193, China;
[email protected] (X.L.);
[email protected] (S.D.) 2 College of Forestry, Henan University of Science and Technology, Luoyang 471023, China;
[email protected] 3 Department of Entomology, Purdue University, West Lafayette, IN 47907, USA;
[email protected] 4 Department of Plant and Environmental Protection Science, University of Hawaii at Manoa, Honolulu, HI 96822, USA;
[email protected] 5 College of Agronomy, Inner Mongolia Agricultural University, Hohhot 010018, China * Correspondences:
[email protected] (L.S.);
[email protected] (D.Y.); Tel.: +86-471-431-7421 (L.S.); +86-10-6273-2999 (D.Y.) † These authors contributed equally to this work. Academic Editor: Kun Yan Zhu Received: 26 January 2017; Accepted: 1 April 2017; Published: 14 April 2017 Abstract: The superfamily Lauxanioidea is a significant dipteran clade including over 2500 known species in three families: Lauxaniidae, Celyphidae and Chamaemyiidae. We sequenced the first five (three complete and two partial) lauxanioid mitochondrial (mt) genomes, and used them to reconstruct the phylogeny of this group. The lauxanioid mt genomes are typical of the Diptera, containing all 37 genes usually present in bilaterian animals. A total of three conserved intergenic sequences have been reported across the Cyclorrhapha. The inferred secondary structure of 22 tRNAs suggested five substitution patterns among the Cyclorrhapha.