Inter-Specific Hybridization in the Fish Family Cyprinidae
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Phylogenetic Relationships of Eurasian and American Cyprinids Using Cytochrome B Sequences
Journal of Fish Biology (2002) 61, 929–944 doi:10.1006/jfbi.2002.2105, available online at http://www.idealibrary.com on Phylogenetic relationships of Eurasian and American cyprinids using cytochrome b sequences C. C*, N. M*, T. E. D†, A. G‡ M. M. C*§ *Centro de Biologia Ambiental, Departamento de Zoologia e Antropologia, Faculdade de Cieˆncia de Lisboa, Campo Grande, Bloco C2, 3 Piso. 1749-016 Lisboa, Portugal, †Department of Biology, Arizona State University, Tempe, Arizona 85287-1501, U.S.A. and ‡Laboratoire d’Hydrobiology, Universite´ de Provence, 1 Place Victor Hugo, 1331 Marseille, France (Received 30 January 2002, Accepted 6 August 2002) Neighbour-joining and parsimony analyses identified five lineages of cyprinids: (1) European leuciscins (including Notemigonus)+North American phoxinins (including Phoxinus phoxinus); (2) European gobionins+Pseudorasbora; (3) primarily Asian groups [cultrins+acheilognathins+ gobionins (excluding Abbotina)+xenocyprinins]; (4) Abbottina+Sinocyclocheilus+Acrossocheilus; (5) cyprinins [excluding Sinocyclocheilus and Acrossocheilus]+barbins+labeonins. Relationships among these lineages and the enigmatic taxa Rhodeus were not well-resolved. Tests of mono- phyly of subfamilies and previously proposed relationships were examined by constraining cytochrome b sequences data to fit previous hypotheses. The analysis of constrained trees indicated that sequence data were not consistent with most previously proposed relationships. Inconsistency was largely attributable to Asian taxa, such as Xenocypris and Xenocyprioides. Improved understanding of historical and taxonomic relationships in Cyprinidae will require further morphological and molecular studies on Asian cyprinids and taxa representative of the diversity found in Africa. 2002 The Fisheries Society of the British Isles. Published by Elsevier Science Ltd. All rights reserved. Key words: Cyprinidae; molecular phylogeny; cytochrome b; monophyly of subfamilies. -
Actinopterygii, Cyprinidae) En La Cuenca Del Mediterráneo Occidental
UNIVERSIDAD COMPLUTENSE DE MADRID FACULTAD DE CIENCIAS BIOLÓGICAS TESIS DOCTORAL Filogenia, filogeografía y evolución de Luciobarbus Heckel, 1843 (Actinopterygii, Cyprinidae) en la cuenca del Mediterráneo occidental MEMORIA PARA OPTAR AL GRADO DE DOCTOR PRESENTADA POR Miriam Casal López Director Ignacio Doadrio Villarejo Madrid, 2017 © Miriam Casal López, 2017 UNIVERSIDAD COMPLUTENSE DE MADRID Facultad de Ciencias Biológicas Departamento de Zoología y Antropología física Phylogeny, phylogeography and evolution of Luciobarbus Heckel, 1843, in the western Mediterranean Memoria presentada para optar al grado de Doctor por Miriam Casal López Bajo la dirección del Doctor Ignacio Doadrio Villarejo Madrid - Febrero 2017 Ignacio Doadrio Villarejo, Científico Titular del Museo Nacional de Ciencias Naturales – CSIC CERTIFICAN: Luciobarbus Que la presente memoria titulada ”Phylogeny, phylogeography and evolution of Heckel, 1843, in the western Mediterranean” que para optar al grado de Doctor presenta Miriam Casal López, ha sido realizada bajo mi dirección en el Departamento de Biodiversidad y Biología Evolutiva del Museo Nacional de Ciencias Naturales – CSIC (Madrid). Esta memoria está además adscrita académicamente al Departamento de Zoología y Antropología Física de la Facultad de Ciencias Biológicas de la Universidad Complutense de Madrid. Considerando que representa trabajo suficiente para constituir una Tesis Doctoral, autorizamos su presentación. Y para que así conste, firmamos el presente certificado, El director: Ignacio Doadrio Villarejo El doctorando: Miriam Casal López En Madrid, a XX de Febrero de 2017 El trabajo de esta Tesis Doctoral ha podido llevarse a cabo con la financiación de los proyectos del Ministerio de Ciencia e Innovación. Además, Miriam Casal López ha contado con una beca del Ministerio de Ciencia e Innovación. -
12421929.Pdf
UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL THE EVOLUTION OF SQUALIUS ALBURNOIDES (TELEOSTEI: CYPRINIDAE) POPULATIONS IN THE NORTHERN IBERIAN PENINSULA . A MOLECULAR GENETICS AND MORPHOLOGICAL APPROACH INTO THE PAST AND PRESENT DYNAMICS OF AN HYBRID COMPLEX CARINA JOÃO ALVES DA CUNHA Tese Co-orientada por: Professora Doutora Maria Manuela Coelho Professor Doutor Ignacio Doadrio DOUTORAMENTO EM BIOLOGIA (Biologia Evolutiva) 2008 The Portuguese Science and Technology Foundation and the European Social Fund supported this study (SFRH / BD / 8637 / 2002). Os trabalhos apresentados nesta tese foram realizados com o apoio financeiro da Fundação Para a Ciência e a Tecnologia e do Fundo Social Europeu (SFRH / BD / 8637 / 2002). This dissertation should be cited as / Esta dissertação deverá ser citada como: Cunha C (2008) The Evolution of Squalius alburnoides (Teleostei: Cyprinidae) Populations in the Northern Iberian Peninsula: A Molecular Genetics and Morphological Approach Into the Past and Present Dynamics of an Hybrid Complex. PhD Thesis, University of Lisbon, Portugal. Nota Prévia Para a elaboração da presente tese de doutoramento foram usados integralmente artigos científicos publicados, em publicação ou submetidos para publicação, em revistas internacionais indexadas. Uma vez que estes trabalhos foram realizados em colaboração com outros investigadores, de acordo com o disposto no nº 1 do Artigo 40º do Regulamento de Estudos Pós-Graduados da Universidade de Lisboa, publicado no Diário da República n.º 153, II Série de 5 de Julho de 2003, a autora da dissertação esclarece que participou integralmente na concepção e execução do trabalho experimental (incluindo todos os cruzamentos laboratoriais), na interpretação dos resultados e na redacção integral dos manuscritos. -
Myxozoan Hidden Diversity: the Case of Myxobolus Pseudodispar Gorbunova, 1936
Institute of Parasitology, Biology Centre CAS Folia Parasitologica 2020, 67: 019 doi: 10.14411/fp.2020.019 http://folia.paru.cas.cz Research Article Myxozoan hidden diversity: the case of Myxobolus pseudodispar Gorbunova, 1936 Martina Lisnerová1,2, Petr Blabolil3, Astrid Holzer1, Pavel Jurajda4 and Ivan Fiala1,2 1Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic; 2Department of Parasitology, Faculty of Sciences, University of South Bohemia, České Budějovice, Czech Republic; 3Institute of Hydrobiology, Biology Centre of the Czech Academy of Sciences, České Budějovice, Czech Republic; 4Institute of Vertebrate Biology of the Czech Academy of Sciences, Brno, Czech Republic Abstract: Myxobolus pseudodispar Gorbunova, 1936 (Myxozoa) was originally described as a parasite of common roach, Rutilus rutilus (Linnaeus), with developing stages in muscles and spores disseminated in macrophage centres of different organs and tissues. Later, this parasite was described from several other cyprinids, but with relatively large intraspecific differences based on SSU rDNA gene sequences. Within our long-term study on myxozoan biodiversity, we performed a broad microscopic and molecular screening of various freshwater fish species (over 450 specimens, 36 species) from different localities. We investigated the cryptic species status of M. pseudodispar. Our analysis revealed four new unique SSU rDNA sequences of M. pseudodispar as well as an infection in new fish host species. Myxobolus pseudodispar sequence analysis showed clear phylogenetic grouping according to fish host criterion forming 13 well-recognised clades. Using 1% SSU rDNA-based genetic distance criterion, at least ten new species of Myxobolus Bütschli, 1882 may be recognised in the group of M. -
Molecular Evolution of Connective Tissue Growth Factor in Cyprinidae (Teleostei: Cypriniformes)
Available online at www.sciencedirect.com Progress in Natural Science 18 (2008) 155–160 Molecular evolution of connective tissue growth factor in Cyprinidae (Teleostei: Cypriniformes) Xianghui Kong a,b, Xuzhen Wang a, Xiaoni Gan a, Junbing Li a, Shunping He a,* a Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China b College of Life Science, Henan Normal University, Xinxiang 453007, China Received 8 June 2007; received in revised form 28 June 2007; accepted 28 June 2007 Abstract Connective tissue growth factor (CTGF) plays an important role in regulation of cell growth, differentiation, apoptosis and individual development in animals. The study of sequences variation and molecular evolution of CTGF gene across various species of the cyprinid could be helpful for understanding of speciation and gene divergence in this kind of fish. In this study, 19 novel sequences of CTGF gene were obtained from the representative species of the family Cyprinidae using PCR amplification, cloning and sequencing. Phylogenetic relationships of Cyprinidae were reconstructed by neighbor-joining (NJ), maximum parsimony (MP), maximum likelihood (ML) and Bayesian method. Oryzias latipes from the family Cyprinodontidae was assigned to be the outgroup taxon. Leuciscini and Barbini were clustered into the monophyletic lineages, respectively, with the high nodal supports. The estimation of the ratio of non-synonymous to synonymous substitution (dN/dS) for the various branches indicated that there stood the different evolution rates between the Leuciscini and the Barbini. With the ratio of dN/dS of the Leuciscini being lower than that of the Barbini, species within the Barbini were demonstrated to be subjected to the relatively less selection pressure and under the relaxable evolution background. -
Carp Dominate Fish Communities Managing the Impacts of Carp Throughout Many Waterways in South- Eastern Australia
Managing the Impacts of Introduced carp dominate fish communities the Impacts of Carp Managing throughout many waterways in south- eastern Australia. They also occur in Carp Western Australia and Tasmania and have the potential to spread through many more of Australia’s water systems. Carp could eventually become widespread throughout the country. Carp are known to damage aquatic plants and increase water turbidity but their impacts on native fish species are not yet clear. Carp are also a commercial and recreational fishing resource. Managing the Impacts of Carp provides a comprehensive review of the history of carp in Australia, their biology, the damage they cause and community attitudes to these problems and their solutions. Key strategies for successful carp manage- ment are recommended by the authors who are scientific experts in carp manage- ment. These strategies are illustrated by case studies. Managing the Impacts of Carp is an essential guide for policy makers, land and water managers, carp fishers and all others interested in carp management. AGRICULTURE, FISHERIES AND FORESTRY - AUSTRALIA Managing the Impacts of Carp John Koehn, Andr ea Brumley and Peter Gehrke Scientific editing by Mary Bomfor d Published by Bureau of Rural Sciences, Canberra © Commonwealth of Australia 2000 ISBN 0 644 29240 7 (set) ISBN 0 642 73201 9 (this publication) This work is copyright. Apart from any use as permitted under the Copyright Act 1968, no part may be reproduced by any process without prior written permission from the Bureau of Rural Sciences. Requests and inquiries concerning reproduction and rights should be addressed to the Executive Director, Bureau of Rural Sciences, PO Box E11, Kingston ACT 2604. -
Phylogenetic Relationships and Biogeographical Patterns in Circum
Perea et al. BMC Evolutionary Biology 2010, 10:265 http://www.biomedcentral.com/1471-2148/10/265 RESEARCH ARTICLE Open Access Phylogenetic relationships and biogeographical patterns in Circum-Mediterranean subfamily Leuciscinae (Teleostei, Cyprinidae) inferred from both mitochondrial and nuclear data Silvia Perea1*, Madelaine Böhme2, Primož Zupančič3, Jörg Freyhof4, Radek Šanda5, Müfit Özuluğ6, Asghar Abdoli7, Ignacio Doadrio1 Abstract Background: Leuciscinae is a subfamily belonging to the Cyprinidae fish family that is widely distributed in Circum-Mediterranean region. Many efforts have been carried out to deciphering the evolutionary history of this group. Thus, different biogeographical scenarios have tried to explain the colonization of Europe and Mediterranean area by cyprinids, such as the “north dispersal” or the “Lago Mare dispersal” models. Most recently, Pleistocene glaciations influenced the distribution of leuciscins, especially in North and Central Europe. Weighing up these biogeographical scenarios, this paper constitutes not only the first attempt at deciphering the mitochondrial and nuclear relationships of Mediterranean leuciscins but also a test of biogeographical hypotheses that could have determined the current distribution of Circum-Mediterranean leuciscins. Results: A total of 4439 characters (mitochondrial + nuclear) from 321 individuals of 176 leuciscine species rendered a well-supported phylogeny, showing fourteen main lineages. Analyses of independent mitochondrial and nuclear markers supported the same main lineages, but basal relationships were not concordant. Moreover, some incongruence was found among independent mitochondrial and nuclear phylogenies. The monophyly of some poorly known genera such as Pseudophoxinus and Petroleuciscus was rejected. Representatives of both genera belong to different evolutionary lineages. Timing of cladogenetic events among the main leuciscine lineages was gained using mitochondrial and all genes data set. -
Univerzita Karlova V Praze Přírodovědecká Fakulta
Univerzita Karlova v Praze Přírodovědecká fakulta Studijní program: biologie Studijní obor: zoologie Dmytro Omelchenko Genetická variabilita rodu Alburnoides v Ázerbajdžánu Genetic variability of the genus Alburnoides in Azerbaijan Diplomová práce Školitel: RNDr. Miroslav Švátora, CSc. Konzultant Mgr. Radek Šanda, PhD. Praha, 2016 Prohlášení: Prohlašuji, že jsem práci vypracoval samostatně s použitím uvedené literatury. Práce je psána v jazyce anglickém a nebyla v ní provedena jazyková korektura. Anglický jazyk byl zvolen pro usnadnění vzniku budoucí odborné publikace a možnost případné konzultace se zahraničními odborníky. Tato práce ani její podstatná část nebyla předložena k získání jiného nebo stejného akademického titulu. V Praze, 15. 08. 2016 ................................................. Dmytro Omelchenko Acknowledgements Rád bych poděkoval mým rodičům za veškerou podporu během studia biologie. Děkuji svému školiteli Miroslavu Švátorovi za navržené téma, konzultace a průvod akademickým prostředím Univerzity Karlovy. Chtěl bych také poděkovat svému konzultantovi Radkovi Šandovi za cenné rady a připomínky, finanční podporu a též za vedení v průběhu praktické části této studie. Taktéž děkuji Zuzaně Musilové za pomoc se sestavováním teto práce a přípravu fylogenetických analýz a v neposlední řadě za přátelský přístup. Dále děkuji Akifu Gulievu a kolektivu státní univerzity v Baku za pomoc v organizaci terénní práce a sběru materiálu. Chci poděkovat Danielu Fryntovi za konstruktivní připomínky k interpretaci výsledků. Rad bych poděkoval Zuzaně Varadinové a Dovile Barčytě za pomoc a školení v laboratoři. Také děkuji Zdeňku Lerchovi, Milanu Kaftanovi, Evě Landové a Barbarě Kaftanové za spoluúčast při expedici do Ázerbajdžánu. Abstract: The Caucasus region is characterized by high rate of endemism and taxa richness of fishes. Azerbaijan is a country situated on the border between Europe and Asia with rivers flowing in the Caspian Sea. -
Fishes of the World
Fishes of the World Fishes of the World Fifth Edition Joseph S. Nelson Terry C. Grande Mark V. H. Wilson Cover image: Mark V. H. Wilson Cover design: Wiley This book is printed on acid-free paper. Copyright © 2016 by John Wiley & Sons, Inc. All rights reserved. Published by John Wiley & Sons, Inc., Hoboken, New Jersey. Published simultaneously in Canada. No part of this publication may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying, recording, scanning, or otherwise, except as permitted under Section 107 or 108 of the 1976 United States Copyright Act, without either the prior written permission of the Publisher, or authorization through payment of the appropriate per-copy fee to the Copyright Clearance Center, 222 Rosewood Drive, Danvers, MA 01923, (978) 750-8400, fax (978) 646-8600, or on the web at www.copyright.com. Requests to the Publisher for permission should be addressed to the Permissions Department, John Wiley & Sons, Inc., 111 River Street, Hoboken, NJ 07030, (201) 748-6011, fax (201) 748-6008, or online at www.wiley.com/go/permissions. Limit of Liability/Disclaimer of Warranty: While the publisher and author have used their best efforts in preparing this book, they make no representations or warranties with the respect to the accuracy or completeness of the contents of this book and specifically disclaim any implied warranties of merchantability or fitness for a particular purpose. No warranty may be createdor extended by sales representatives or written sales materials. The advice and strategies contained herein may not be suitable for your situation. -
(Cypriniformes: Cyprinidae) from Northern Laos
Zootaxa 3586: 264–271 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA Copyright © 2012 · Magnolia Press Article ISSN 1175-5334 (online edition) urn:lsid:zoobank.org:pub:1A7BCEC8-39FA-43E4-9303-08FFA241270E A new species of Metzia (Cypriniformes: Cyprinidae) from Northern Laos KOICHI SHIBUKAWA1, PHOUVIN PHOUSAVANH2,3, KONEUMA PHONGSA4 & AKIHISA IWATA3 1Nagao Natural Environment Foundation, 3-10-10 Shitaya, Taito-ku, Tokyo 110-0004, Japan. E-mail: [email protected] 2Faculty of Agriculture, National University of Laos, P.O. Box 7322, Nabong, Vientiane, Lao PDR. 3Laboratory of Ecology and Environment, Division of Southeast Asian Area Studies, Graduate School of Asian and African Area Stud- ies, Kyoto University Yoshida, Shimoadachi-cho 46, Sakyo-ku, Kyoto 606-8501, Japan. E-mail: [email protected] 4Department of Biology, Faculty of Science, National University of Laos, P.O. Box 7322, Dongdok, Vientiane, Lao PDR. E-mail: [email protected] Abstract A new cyprinid fish, Metzia bounthobi, is described on the basis of 18 specimens (including 10 specimens in type series) from the Mekong River basin in Phongsaly and Luang Prabang Provinces, northern Laos. The species is distinguished from congeners by having the following diagnostic traits: 18–20 branched anal-fin rays (vs. 10–18 in the others); 49–55 lateral-line scale rows (vs. 35–48); 33–36 predorsal scale rows (vs. 15–20); 20–22 circumpeduncular scale rows (vs. 14–18); 8–10 gill rakers on outer surface of first gill arch (vs. 12–18). The new species also resembles species of Hemic- ulterella, Ischikauia and at least some species of Anabarilius, in sharing a sharp keel developed only between the base of the pelvic fin and anus, soft last unbranched dorsal-fin ray, and air bladder composed of two chambers; however, M. -
Limits and Phylogenetic Relationships of East Asian Fishes in the Subfamily Oxygastrinae (Teleostei: Cypriniformes: Cyprinidae)
Zootaxa 3681 (2): 101–135 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2013 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3681.2.1 http://zoobank.org/urn:lsid:zoobank.org:pub:64984E2C-1A9E-4086-9D47-74C5D31A4087 Limits and phylogenetic relationships of East Asian fishes in the subfamily Oxygastrinae (Teleostei: Cypriniformes: Cyprinidae) KEVIN L. TANG1,14, MARY K. AGNEW2, M. VINCENT HIRT3,4, DANIEL N. LUMBANTOBING5,6, MORGAN E. RALEY7, TETSUYA SADO8, VIEW-HUNE TEOH9, LEI YANG2, HENRY L. BART10, PHILLIP M. HARRIS9, SHUNPING HE11, MASAKI MIYA8, KENJI SAITOH12, ANDREW M. SIMONS3,13, ROBERT M. WOOD2 & RICHARD L. MAYDEN2 1Department of Biology, University of Michigan-Flint, Flint, MI 48502, USA. E-mail: [email protected] 2Department of Biology, Saint Louis University, St. Louis, MO 63103, USA. E-mails: [email protected] (MKA), [email protected] (LY), [email protected] (RMW), [email protected] (RLM) 3Bell Museum of Natural History, University of Minnesota, Minneapolis, MN 55455, USA. E-mails: [email protected] (MVH), [email protected] (AMS) 4Graduate Program in Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, MN 55108, USA. 5Department of Biological Sciences, The George Washington University, Washington, D.C. 20052, USA. E-mail: [email protected] 6Division of Fishes, Smithsonian Institution, National Museum of Natural History, Washington, D.C., 20013, USA. 7Nature Research Center, North Carolina Museum of Natural Sciences, Raleigh, NC 27603, USA. E-mail: [email protected] 8Department of Zoology, Natural History Museum and Institute, Chiba, Chiba 260-8682, Japan. E-mails: [email protected] (TS), [email protected] (MM) 9Department of Biological Sciences, The University of Alabama, Tuscaloosa, AL 35487, USA. -
Molecular Phylogeny of the Opsariichthys
Zoological Studies 56: 40 (2017) doi:10.6620/ZS.2017.56-40 Open Access Molecular Phylogeny of the Opsariichthys Group (Teleostei: Cypriniformes) Based On Complete Mitochondrial Genomes Shih-Pin Huang1, Feng-Yu Wang2, and Tzi-Yuan Wang1,* 1Biodiversity Research Center, Academia Sinica, Nankang, Taipei, Taiwan. E-mail: [email protected] 2Taiwan Ocean Research Institute, National Applied Research Laboratories, Kaohsiung, Taiwan. E-mail: [email protected] (Received 13 December 2016; Accepted 6 December 2017; Published 21 December 2017; Communicated by Benny K.K. Chan) Shih-Pin Huang, Feng-Yu Wang, and Tzi-Yuan Wang (2017) The complete mitochondrial genomes of 76 species from 43 genera under Cyprinidae sensu lato were collected to reassess the molecular phylogeny of Opsariichthyinae sensu Liao et al. 2011. The mitogenomes of three species, Candidia barbata, Opsariichthys evolans, and Opsariichthys pachycephalus, were newly sequenced. Phylogenetic trees were reconstructed based on 13 concatenated multiple protein-coding genes with two ribosomal RNA genes. The concatenated dataset provided a new perspective on systematics and relationships. Tree topologies show that a monophyletic group containing Parazacco, Candidia, Nipponocypris, Zacco, and Opsariichthys should belong to the Opsariichthys group. In addition, the present results also strongly support that Candidia and Nipponocypris should be regarded as distinct genera within the Opsariichthys group. Aphyocypris, Yaoshanicus, Nicholsicypris, and Pararasbora form a monophyletic group within Xenocyprididae, distinct from the Opsariichthys group. Furthermore, Hemigrammocypris is nested with four species of Metzia, a genus of ex-Cultrinae in Xenocyprididae. In addition, two major types of distinct stripes - longitudinal and vertical - were observed among species of the Opsariichthys group and were highly correlated with molecular phylogenetic relationships.