Family-Group Names in Recent Fishes 20 Sept. 2013
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Reef Fish Monitoring Te Tapuwae O Rongokako Marine Reserve
Reef Fish Monitoring Te Tapuwae o Rongokako Marine Reserve Technical Support - Marine East Coast Hawke’s Bay Conservancy Debbie Freeman OCTOBER 2005 Published By Department of Conservation East Coast Hawkes Bay Conservancy PO Box 668 Gisborne 4040, New Zeland Cover: Banded wrasse Photo: I. Nilsson Title page: Koheru Photo: M. Blackwell Acknowledgments: Blue maomao Photo: J. Quirk © Copyright October 2005, New Zealand Department of Conservation ISSN 1175-026X ISBN 978-0-478-14143-6 (paperback) ISBN 978-0-478-14193-1 (Web pdf) Techincal Support Series Number: 25 In the interest of forest conservation, DOC Science Publishing supports paperless electronic publishing. When printing, recycled paper is used wherever possible. C ontents Abstract 4 Introduction 5 Methods 6 Results 10 Discussion 20 Fish fauna 20 Protection effects 21 Reserve age and design 21 Experimental design and monitoring methods 22 Illegal fishing 23 Environmental factors 24 Acknowledgements 24 References 25 Abstract Reef fish monitoring was undertaken within and surrounding Te Tapuwae o Rongokako Marine Reserve, on the North Island’s East Coast, between 2000 and 2004. The objective of the monitoring was to describe the reef fish communities and to establish whether populations within the marine reserve were demonstrating any changes in abundance or size that could be attributable to the removal of fishing pressure. The underwater visual census method was used to survey the four lo- cations (marine reserve and three non-reserve locations). It was found that all four locations were characterised by moderate densities of spot- ties, scarlet wrasse and reef-associated planktivores such as blue maomao, sweep and butterfly perch. -
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
Zootaxa 3266: 41–52 (2012) ISSN 1175-5326 (Print Edition) Article ZOOTAXA Copyright © 2012 · Magnolia Press ISSN 1175-5334 (Online Edition)
Zootaxa 3266: 41–52 (2012) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2012 · Magnolia Press ISSN 1175-5334 (online edition) Thalasseleotrididae, new family of marine gobioid fishes from New Zealand and temperate Australia, with a revised definition of its sister taxon, the Gobiidae (Teleostei: Acanthomorpha) ANTHONY C. GILL1,2 & RANDALL D. MOOI3,4 1Macleay Museum and School of Biological Sciences, A12 – Macleay Building, The University of Sydney, New South Wales 2006, Australia. E-mail: [email protected] 2Ichthyology, Australian Museum, 6 College Street, Sydney, New South Wales 2010, Australia 3The Manitoba Museum, 190 Rupert Ave., Winnipeg MB, R3B 0N2 Canada. E-mail: [email protected] 4Department of Biological Sciences, 212B Biological Sciences Bldg., University of Manitoba, Winnipeg MB, R3T 2N2 Canada Abstract Thalasseleotrididae n. fam. is erected to include two marine genera, Thalasseleotris Hoese & Larson from temperate Aus- tralia and New Zealand, and Grahamichthys Whitley from New Zealand. Both had been previously classified in the family Eleotrididae. The Thalasseleotrididae is demonstrably monophyletic on the basis of a single synapomorphy: membrane connecting the hyoid arch to ceratobranchial 1 broad, extending most of the length of ceratobranchial 1 (= first gill slit restricted or closed). The family represents the sister group of a newly diagnosed Gobiidae on the basis of five synapo- morphies: interhyal with cup-shaped lateral structure for articulation with preopercle; laterally directed posterior process on the posterior ceratohyal supporting the interhyal; pharyngobranchial 4 absent; dorsal postcleithrum absent; urohyal without ventral shelf. The Gobiidae is defined by three synapomorphies: five branchiostegal rays; expanded and medially- placed ventral process on ceratobranchial 5; dorsal hemitrich of pelvic-fin rays with complex proximal head. -
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Appendix 1 FISH SPECIES IDENTIFIED FROM THE COASTAL EAST CAPE REGION Surveys of the East Cape Region (Bay of Plenty and East Coast) were conducted during 1992, 1993, and 1999 (see Tables 1, 2, and 4 for locality data), with additional records from the National Fish Collection. FAMILY, SPECIES, AND AUTHORITY COMMON NAME STATIONS Lamnidae Isurus oxyrinchus Rafinesque mako shark (P) E20o Squalidae Squalus mitsukurii Jordon & Snyder piked spurdog (D) W Dasyatidae Dasyatis brevicaudata (Hutton) shorttailed stingray E19o Myliobatidae eMyliobatis tenuicaudatus (Hector) eagle ray E03° Anguillidae Anguilla australis Richardson shortfin eel (F) W eAnguilla dieffenbachii Gray longfin eel (F) W Muraenidae Gymnothorax prasinus (Richardson) yellow moray E05o, E08° Ophichthyidae Scolecenchelys australis (MacLeay) shortfinned worm eel E01, E10, E11, E28, E29, E33, E48 Congridae Conger verreauxi Kaup southern conger eel E03, E07, E09, E12°, E13, E16, E18, E22o, E23o, E25o, E31, E33 Conger wilsoni (Bloch & Schneider) northern conger eel W; E05, E09, E12, E27 Conger sp. conger E01°, E31o Engraulidae Engraulis australis (White) anchovy (P) E Clupeidae Sardinops neopilchardus (Steindachner) pilchard (P) E Gonorynchidae Gonorynchus forsteri Ogilby sandfish (D) E Retropinnidae eRetropinna retropinna (Richardson) smelt (F) W; E Galaxiidae Galaxias maculatus (Jenyns) inanga (F) W; E Bythitidae eBidenichthys beeblebroxi Paulin grey brotula E01, E03, E08, E09, E10, E12, E18, E19, E21, E23, E27, E28, E29, E31, E33, E34 eBrosmodorsalis persicinus Paulin & Roberts pink brotula E02, E07, E10°, E18, E22, E29, E31, E33o eDermatopsis macrodon Ogilby fleshfish E08, E31 Moridae Austrophycis marginata (Günther) dwarf cod (D) E Continued next page > e = NZ endemic species. D = deepwater species (> 50 m depth); E = estuarine species; F = freshwater species; P = pelagic species; U = species of uncertain identity. -
The Evolution of the Placenta Drives a Shift in Sexual Selection in Livebearing Fish
LETTER doi:10.1038/nature13451 The evolution of the placenta drives a shift in sexual selection in livebearing fish B. J. A. Pollux1,2, R. W. Meredith1,3, M. S. Springer1, T. Garland1 & D. N. Reznick1 The evolution of the placenta from a non-placental ancestor causes a species produce large, ‘costly’ (that is, fully provisioned) eggs5,6, gaining shift of maternal investment from pre- to post-fertilization, creating most reproductive benefits by carefully selecting suitable mates based a venue for parent–offspring conflicts during pregnancy1–4. Theory on phenotype or behaviour2. These females, however, run the risk of mat- predicts that the rise of these conflicts should drive a shift from a ing with genetically inferior (for example, closely related or dishonestly reliance on pre-copulatory female mate choice to polyandry in conjunc- signalling) males, because genetically incompatible males are generally tion with post-zygotic mechanisms of sexual selection2. This hypoth- not discernable at the phenotypic level10. Placental females may reduce esis has not yet been empirically tested. Here we apply comparative these risks by producing tiny, inexpensive eggs and creating large mixed- methods to test a key prediction of this hypothesis, which is that the paternity litters by mating with multiple males. They may then rely on evolution of placentation is associated with reduced pre-copulatory the expression of the paternal genomes to induce differential patterns of female mate choice. We exploit a unique quality of the livebearing fish post-zygotic maternal investment among the embryos and, in extreme family Poeciliidae: placentas have repeatedly evolved or been lost, cases, divert resources from genetically defective (incompatible) to viable creating diversity among closely related lineages in the presence or embryos1–4,6,11. -
Butterfly Splitfin (Ameca Splendens) Ecological Risk Screening Summary
Butterfly Splitfin (Ameca splendens) Ecological Risk Screening Summary U.S. Fish and Wildlife Service, January 2013 Revised, January 2018 Web Version, 8/27/2018 Photo: Ameca splendens. Source: Getty Images. Available: https://rmpbs.pbslearningmedia.org/resource/128605480-endangered-species/butterfly-goodeid- ameca-splendens/#.Wld1X7enGUk. (January 2018). 1 1 Native Range and Status in the United States Native Range From Fuller (2018): “This species is confined to a very small area, the Río Ameca basin, on the Pacific Slope of western Mexico (Miller and Fitzsimons 1971).” From Goodeid Working Group (2018): “This species comes from the Pacific Slope and inhabits the Río Ameca and its tributary, the Río Teuchitlán in Jalisco. More habitats in the ichthyological [sic] closely connected Sayula valley have been detected quite recently.” Status in the United States From Fuller (2018): “Reported from Nevada. Records are more than 25 years old and the current status is not known to us. One individual was taken in November 1981 (museum specimen) and another in August 1983 from Rodgers Spring, Nevada (Courtenay and Deacon 1983, Deacon and Williams 1984). Others were seen and not collected (Courtenay, personal communication).” From Goodeid Working Group (2018): “Miller reported, that on 6 May 1982, this species was collected in Roger's Spring, Clark County, Nevada, (pers. comm. to Miller by P.J. Unmack) where it is now extirpated. It had been exposed there with several other exotic species (Deacon [and Williams] 1984).” From FAO (2018): “Status of the introduced species in the wild: Probably not established.” From Froese and Pauly (2018): “Raised commercially in Florida, U.S.A.” Means of Introductions in the United States From Fuller (2018): “Probably an aquarium release.” Remarks From Fuller (2018): “Synonyms and Other Names: butterfly goodeid.” 2 From Goodeid Working Group (2018): “Some hybridisation attempts have been undertaken with the Butterfly Splitfin to solve its relationship. -
A Replacement Name for the Preoccupied Genus Name Adamas Huber, 1979 (Actinopterygii: Cyprinodontiformes)
_____________Mun. Ent. Zool. Vol. 1, No. 1, January 2006___________ 167 A REPLACEMENT NAME FOR THE PREOCCUPIED GENUS NAME ADAMAS HUBER, 1979 (ACTINOPTERYGII: CYPRINODONTIFORMES) Hüseyin Özdikmen*, Nazmi Polat**, Mahmut Yılmaz*** and Okan Yazıcıoğlu*** * Gazi Üniversitesi, Fen-Edebiyat Fakültesi, Biyoloji Bölümü, 06500 Ankara / TÜRKİYE, e-mail: [email protected] ** Gazi Üniversitesi, Fen-Edebiyat Fakültesi, Biyoloji Bölümü, 06500 Ankara / TÜRKİYE, e-mail: [email protected] *** Gazi Üniversitesi, Fen-Edebiyat Fakültesi, Biyoloji Bölümü, 06500 Ankara / TÜRKİYE, e-mails: [email protected]; [Özdikmen, H., Polat, N., Yılmaz, M. & Yazıcıoğlu, O. 2006. A replacement name for the preoccupied genus name Adamas Huber, 1979 (Actinopterygii: Cyprinodontiformes). Munis Entomology & Zoology, 1 (1): 167-168] ABSTRACT: A replacement name, Fenerbahce is proposed for the genus name Adamas Huber, 1979 in the fish family Aplocheilidae (Cyprinodontiformes). KEY WORDS: Fenerbahce, Adamas, homonymy, replacement name, Actinopterygii, Cyprinodontiformes, Aplocheilidae. Class Actinopterygii Order Cyprinodontiformes Family Aplocheilidae Genus Fenerbahce nom. nov. Adamas Huber, 1979. Journal Am. Killifish Ass. 12 (6): 166 and Revue fr. Aquariol. Herpetol. 6 (1): 6. (Actinopterygii: Cyprinodontiformes: Aplocheiloidei: Aplocheilidae: Aplocheilinae). Preoccupied by Adamas Malaise, 1945. Opusc. ent., Lund, Suppl. 4, 97. (Hymenoptera: Symphyta: Tenthredinoidea: Tenthredinidae: Allantinae: Adamasini). The genus name Adamas was proposed by Malaise, 1945 as an objective replacement name of the genus Dinax Konow, 1897 with the type species Dinax jakowleffi Konow, 1897. For the present, the genus Adamas Malaise, 1945 includes six species (Wei, 2004). Subsequently, the genus Adamas was described by Huber, 1979 with the type species Adamas formosus Huber, 1979 by monotypy from in front of Ntokou village near the banks of Likouala-Mossaka River, Congo. -
TNP SOK 2011 Internet
GARDEN ROUTE NATIONAL PARK : THE TSITSIKAMMA SANP ARKS SECTION STATE OF KNOWLEDGE Contributors: N. Hanekom 1, R.M. Randall 1, D. Bower, A. Riley 2 and N. Kruger 1 1 SANParks Scientific Services, Garden Route (Rondevlei Office), PO Box 176, Sedgefield, 6573 2 Knysna National Lakes Area, P.O. Box 314, Knysna, 6570 Most recent update: 10 May 2012 Disclaimer This report has been produced by SANParks to summarise information available on a specific conservation area. Production of the report, in either hard copy or electronic format, does not signify that: the referenced information necessarily reflect the views and policies of SANParks; the referenced information is either correct or accurate; SANParks retains copies of the referenced documents; SANParks will provide second parties with copies of the referenced documents. This standpoint has the premise that (i) reproduction of copywrited material is illegal, (ii) copying of unpublished reports and data produced by an external scientist without the author’s permission is unethical, and (iii) dissemination of unreviewed data or draft documentation is potentially misleading and hence illogical. This report should be cited as: Hanekom N., Randall R.M., Bower, D., Riley, A. & Kruger, N. 2012. Garden Route National Park: The Tsitsikamma Section – State of Knowledge. South African National Parks. TABLE OF CONTENTS 1. INTRODUCTION ...............................................................................................................2 2. ACCOUNT OF AREA........................................................................................................2 -
Zootaxa, Marine Fish Diversity: History of Knowledge and Discovery
Zootaxa 2525: 19–50 (2010) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2010 · Magnolia Press ISSN 1175-5334 (online edition) Marine fish diversity: history of knowledge and discovery (Pisces) WILLIAM N. ESCHMEYER1, 5, RONALD FRICKE2, JON D. FONG3 & DENNIS A. POLACK4 1Curator emeritus, California Academy of Sciences, San Francisco, California, U.S.A. 94118 and Research Associate, Florida Museum of Natural History, Gainesville, Florida, U.S.A. 32611. E-mail: [email protected] 2Ichthyology, Staatliches Museum für Naturkunde, Rosenstein 1, 70191 Stuttgart, Germany. E-mail: [email protected] 3California Academy of Sciences, San Francisco, California, U.S.A. 94118. E-mail: [email protected] 4P.O. Box 518, Halfway House 1685, South Africa. E-mail: [email protected] 5Corresponding Author. E-mail: [email protected] Abstract The increase in knowledge of marine fish biodiversity over the last 250 years is assessed. The Catalog of Fishes database (http://research.calacademy.org/ichthyology/catalog) on which this study is based, has been maintained for 25 years and includes information on more than 50,000 available species names of fishes, with more than 31,000 of them currently regarded as valid species. New marine species are being described at a rate of about 100–150 per year, with freshwater numbers slightly higher. In addition, over 10,000 generic names are available ones of which 3,118 are deemed valid for marine fishes (as of Feb. 19, 2010). This report concentrates on fishes with at least some stage of their life cycle in the sea. The number of valid marine species, about 16,764 (Feb. -
Phylogenetic Relationships of Eurasian and American Cyprinids Using Cytochrome B Sequences
Journal of Fish Biology (2002) 61, 929–944 doi:10.1006/jfbi.2002.2105, available online at http://www.idealibrary.com on Phylogenetic relationships of Eurasian and American cyprinids using cytochrome b sequences C. C*, N. M*, T. E. D†, A. G‡ M. M. C*§ *Centro de Biologia Ambiental, Departamento de Zoologia e Antropologia, Faculdade de Cieˆncia de Lisboa, Campo Grande, Bloco C2, 3 Piso. 1749-016 Lisboa, Portugal, †Department of Biology, Arizona State University, Tempe, Arizona 85287-1501, U.S.A. and ‡Laboratoire d’Hydrobiology, Universite´ de Provence, 1 Place Victor Hugo, 1331 Marseille, France (Received 30 January 2002, Accepted 6 August 2002) Neighbour-joining and parsimony analyses identified five lineages of cyprinids: (1) European leuciscins (including Notemigonus)+North American phoxinins (including Phoxinus phoxinus); (2) European gobionins+Pseudorasbora; (3) primarily Asian groups [cultrins+acheilognathins+ gobionins (excluding Abbotina)+xenocyprinins]; (4) Abbottina+Sinocyclocheilus+Acrossocheilus; (5) cyprinins [excluding Sinocyclocheilus and Acrossocheilus]+barbins+labeonins. Relationships among these lineages and the enigmatic taxa Rhodeus were not well-resolved. Tests of mono- phyly of subfamilies and previously proposed relationships were examined by constraining cytochrome b sequences data to fit previous hypotheses. The analysis of constrained trees indicated that sequence data were not consistent with most previously proposed relationships. Inconsistency was largely attributable to Asian taxa, such as Xenocypris and Xenocyprioides. Improved understanding of historical and taxonomic relationships in Cyprinidae will require further morphological and molecular studies on Asian cyprinids and taxa representative of the diversity found in Africa. 2002 The Fisheries Society of the British Isles. Published by Elsevier Science Ltd. All rights reserved. Key words: Cyprinidae; molecular phylogeny; cytochrome b; monophyly of subfamilies. -
Identifying Sagittae Otoliths of Mediterranean Sea Gobies
Manuscript 1 Identifying sagittae otoliths of Mediterranean Sea gobies: 2 variability among phylogenetic lineages 3 4 5 A. LOMBARTE *† , M. MILETIĆ ‡, M. KOVAČIĆ §, J. L. OTERO -F ERRER ∏ AND V. M. TUSET * 6 7 *Institut de Ciències del Mar-CSIC, Passeig Marítim 37-48, 08003, Barcelona, Catalonia, 8 Spain, 9 ‡ Energy Institute Hrvoje Pozar, Savska cesta 163, 10001 Zagreb, Croatia, 10 §Natural History Museum Rijeka, Lorenzov prolaz 1HR-51000, Rijeka, Croatia, 11 ∏Universidade de Vigo, Departamento de Ecoloxía e Bioloxía Animal, Campus Universitario 12 de Vigo, Fonte das Ab elleiras, s/n 36310, Vigo, Gali za, Spain 13 14 15 16 17 18 19 20 21 22 23 24 †Author to whom correspondence should be addressed. Tel.: +34 932309564; email: 25 [email protected] 1 26 Gobiidae is the most species rich teleost family in the Mediterranean Sea, where this family is 27 characterized by high taxonomic complexity. Gobies are also an important but often- 28 underestimated part of coastal marine food webs. In this study, we describe and analyse the 29 morphology of the sagittae, the largest otoliths, of 25 species inhabiting the Adriatic and 30 northwestern Mediterranean seas. Our goal was to test the usefulness and efficiency of 31 sagittae otoliths for species identification. Our analysis of otolith contours was based on 32 mathematical descriptors called wavelets, which are related to multi-scale decompositions of 33 contours. Two methods of classification were used: an iterative system based on 10 wavelets 34 that searches the Anàlisi de Formes d'Otòlits (AFORO) database, and a discriminant method 35 based only on the fifth wavelet.