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Dynamic Genetic Diversity and Population Structure of Coreius Guichenoti
ZooKeys 1055: 135–148 (2021) A peer-reviewed open-access journal doi: 10.3897/zookeys.1055.70117 RESEARCH ARTICLE https://zookeys.pensoft.net Launched to accelerate biodiversity research Dynamic genetic diversity and population structure of Coreius guichenoti Dongqi Liu1*, Feng Lan2*, Sicai Xie1, Yi Diao1, Yi Zheng1, Junhui Gong1 1 Sichuan Province Key Laboratory of Characteristic Biological Resources of Dry and Hot River Valley, Pan- zhihua University, Panzhihua, 617000, China 2 Upper Changjiang River Burean of Hydrological and Water Resources Survey, Chongqing, 400000, China Corresponding author: Feng Lan ([email protected]) Academic editor: M.E. Bichuette | Received 14 June 2021 | Accepted 27 July 2021 | Published 11 August 2021 http://zoobank.org/ADECA19A-B689-47AE-971B-42913F28F5CE Citation: Liu D, Lan F, Xie S, Diao Y, Zheng Y, Gong J (2021) Dynamic genetic diversity and population structure of Coreius guichenoti. ZooKeys 1055: 135–148. https://doi.org/10.3897/zookeys.1055.70117 Abstract To investigate the genetic effects on the population of Coreius guichenoti of dam constructions in the upper reaches of the Yangtze River, we analyzed the genetic diversity and population structure of 12 popula- tions collected in 2009 and 2019 using mitochondrial DNA (mtDNA) control regions. There was no significant difference in genetic diversity between 2009 and 2019P ( > 0.05), but the population structure tended to become stronger. Genetic differentiation (FST) among five populations (LX, BB, YB, SF and JA) collected in 2009 was not significant P( > 0.05). However, some populations collected in 2019 were significantly differentiated (P < 0.05), indicating that the population structure has undergone change. -
Genus Gobio (Pisces, Cyprinidae)
Cytologia 38: 731-736, 1973 A Comparative Study of the Karyotype in the Genus Gobio (Pisces, Cyprinidae) P. Raicu, Elena Taisescu and P. Banarescu Department of Genetics, University of Bucharest and Department of Animal Taxonomy and Evolution, Institute of Biology, Bucharest, Rumania Received July 27, 1972 The subfamily Gobioninae (Pisces, Cyprinidae) includes 84 species represented by 20 genera, a single one of which, Gobio has a Palaearctic range, occurring through the northern part of East Asia, Siberia, Europe and parts of West and Central Asia, while the remaining genera are restricted to East Asia (Banarescu and Nal bant 1972). The genus Gobio is represented in Europe, Anatolia and the Caucas by seven species, one of which, G. gobio, has a wide Palearctic distribution, a second one, G. albipinnatus, is distributed from the Danube to Volga river, while the five other species are restricted to a single or to a few drainages. Four species live in Rumania: G. gobio is rather ubiquitous, occurring in many biotopes though it is absent from the Danube R. itself; and G. uranoscopus, G. albipinnatus and G. kessleri, occur in a peculiar biotype, although they are quite frequent in some localities specially for the two last-named ones. Considering that only a few cytogenetical studies were carried on fishes, and that there are many unsolved problems in taxonomy of the family Cyprinidae and of the Gobioninae subfamily, we considered necessary to make a comparative study on the karyotype of the Gobio species occurring in Romania. This became possible by elaborating a laboratory method for demonstrating the chromosomes in fishes (Raicu and Taisescu 1972) which gave very good results. -
Family-Cyprinidae-Gobioninae-PDF
SUBFAMILY Gobioninae Bleeker, 1863 - gudgeons [=Gobiones, Gobiobotinae, Armatogobionina, Sarcochilichthyna, Pseudogobioninae] GENUS Abbottina Jordan & Fowler, 1903 - gudgeons, abbottinas [=Pseudogobiops] Species Abbottina binhi Nguyen, in Nguyen & Ngo, 2001 - Cao Bang abbottina Species Abbottina liaoningensis Qin, in Lui & Qin et al., 1987 - Yingkou abbottina Species Abbottina obtusirostris (Wu & Wang, 1931) - Chengtu abbottina Species Abbottina rivularis (Basilewsky, 1855) - North Chinese abbottina [=lalinensis, psegma, sinensis] GENUS Acanthogobio Herzenstein, 1892 - gudgeons Species Acanthogobio guentheri Herzenstein, 1892 - Sinin gudgeon GENUS Belligobio Jordan & Hubbs, 1925 - gudgeons [=Hemibarboides] Species Belligobio nummifer (Boulenger, 1901) - Ningpo gudgeon [=tientaiensis] Species Belligobio pengxianensis Luo et al., 1977 - Sichuan gudgeon GENUS Biwia Jordan & Fowler, 1903 - gudgeons, biwas Species Biwia springeri (Banarescu & Nalbant, 1973) - Springer's gudgeon Species Biwia tama Oshima, 1957 - tama gudgeon Species Biwia yodoensis Kawase & Hosoya, 2010 - Yodo gudgeon Species Biwia zezera (Ishikawa, 1895) - Biwa gudgeon GENUS Coreius Jordan & Starks, 1905 - gudgeons [=Coripareius] Species Coreius cetopsis (Kner, 1867) - cetopsis gudgeon Species Coreius guichenoti (Sauvage & Dabry de Thiersant, 1874) - largemouth bronze gudgeon [=platygnathus, zeni] Species Coreius heterodon (Bleeker, 1865) - bronze gudgeon [=rathbuni, styani] Species Coreius septentrionalis (Nichols, 1925) - Chinese bronze gudgeon [=longibarbus] GENUS Coreoleuciscus -
Resolving Cypriniformes Relationships Using an Anchored Enrichment Approach Carla C
Stout et al. BMC Evolutionary Biology (2016) 16:244 DOI 10.1186/s12862-016-0819-5 RESEARCH ARTICLE Open Access Resolving Cypriniformes relationships using an anchored enrichment approach Carla C. Stout1*†, Milton Tan1†, Alan R. Lemmon2, Emily Moriarty Lemmon3 and Jonathan W. Armbruster1 Abstract Background: Cypriniformes (minnows, carps, loaches, and suckers) is the largest group of freshwater fishes in the world (~4300 described species). Despite much attention, previous attempts to elucidate relationships using molecular and morphological characters have been incongruent. In this study we present the first phylogenomic analysis using anchored hybrid enrichment for 172 taxa to represent the order (plus three out-group taxa), which is the largest dataset for the order to date (219 loci, 315,288 bp, average locus length of 1011 bp). Results: Concatenation analysis establishes a robust tree with 97 % of nodes at 100 % bootstrap support. Species tree analysis was highly congruent with the concatenation analysis with only two major differences: monophyly of Cobitoidei and placement of Danionidae. Conclusions: Most major clades obtained in prior molecular studies were validated as monophyletic, and we provide robust resolution for the relationships among these clades for the first time. These relationships can be used as a framework for addressing a variety of evolutionary questions (e.g. phylogeography, polyploidization, diversification, trait evolution, comparative genomics) for which Cypriniformes is ideally suited. Keywords: Fish, High-throughput -
An Assessment of Exotic Species in the Tonle Sap Biosphere Reserve
AN ASSESSMENT OF EXOTIC SPECIES IN THE TONLE SAP BIOSPHERE RESERVE AND ASSOCIATED THREATS TO BIODIVERSITY A RESOURCE DOCUMENT FOR THE MANAGEMENT OF INVASIVE ALIEN SPECIES December 2006 Robert van Zalinge (compiler) This publication is a technical output of the UNDP/GEF-funded Tonle Sap Conservation Project Executive Summary Introduction This report is mainly a literature review. It attempts to put together all the available information from recent biological surveys, and environmental and resource use studies in the Tonle Sap Biosphere Reserve (TSBR) in order to assess the status of exotic species and report any information on their abundance, distribution and impact. For those exotic species found in the TSBR, it is examined whether they can be termed as being an invasive alien species (IAS). IAS are exotic species that pose a threat to native ecosystems, economies and/or human health. It is widely believed that IAS are the second most significant threat to biodiversity worldwide, following habitat destruction. In recognition of the threat posed by IAS the Convention on Biological Diversity puts forward the following strategy to all parties in Article 8h: “each contracting party shall as far as possible and as appropriate: prevent the introduction of, control, or eradicate those alien species which threaten ecosystems, habitats or species”. The National Assembly of Cambodia ratified the Convention on Biological Diversity in 1995. After reviewing the status of exotic species in the Tonle Sap from the literature, as well as the results from a survey based on questionnaires distributed among local communities, the main issues are discussed, possible strategies to combat the spread of alien species that are potentially invasive are examined, and recommendations are made to facilitate the implementation of a strategy towards reducing the impact of these species on the TSBR ecosystem. -
Phylogenetic Relationships of Eurasian and American Cyprinids Using Cytochrome B Sequences
Journal of Fish Biology (2002) 61, 929–944 doi:10.1006/jfbi.2002.2105, available online at http://www.idealibrary.com on Phylogenetic relationships of Eurasian and American cyprinids using cytochrome b sequences C. C*, N. M*, T. E. D†, A. G‡ M. M. C*§ *Centro de Biologia Ambiental, Departamento de Zoologia e Antropologia, Faculdade de Cieˆncia de Lisboa, Campo Grande, Bloco C2, 3 Piso. 1749-016 Lisboa, Portugal, †Department of Biology, Arizona State University, Tempe, Arizona 85287-1501, U.S.A. and ‡Laboratoire d’Hydrobiology, Universite´ de Provence, 1 Place Victor Hugo, 1331 Marseille, France (Received 30 January 2002, Accepted 6 August 2002) Neighbour-joining and parsimony analyses identified five lineages of cyprinids: (1) European leuciscins (including Notemigonus)+North American phoxinins (including Phoxinus phoxinus); (2) European gobionins+Pseudorasbora; (3) primarily Asian groups [cultrins+acheilognathins+ gobionins (excluding Abbotina)+xenocyprinins]; (4) Abbottina+Sinocyclocheilus+Acrossocheilus; (5) cyprinins [excluding Sinocyclocheilus and Acrossocheilus]+barbins+labeonins. Relationships among these lineages and the enigmatic taxa Rhodeus were not well-resolved. Tests of mono- phyly of subfamilies and previously proposed relationships were examined by constraining cytochrome b sequences data to fit previous hypotheses. The analysis of constrained trees indicated that sequence data were not consistent with most previously proposed relationships. Inconsistency was largely attributable to Asian taxa, such as Xenocypris and Xenocyprioides. Improved understanding of historical and taxonomic relationships in Cyprinidae will require further morphological and molecular studies on Asian cyprinids and taxa representative of the diversity found in Africa. 2002 The Fisheries Society of the British Isles. Published by Elsevier Science Ltd. All rights reserved. Key words: Cyprinidae; molecular phylogeny; cytochrome b; monophyly of subfamilies. -
Phylogenetic Relationships of Pseudorasbora, Pseudopungtungia,Andpungtungia (Teleostei; Cypriniformes; Gobioninae) Inferred from Multiple Nuclear Gene Sequences
Hindawi Publishing Corporation BioMed Research International Volume 2013, Article ID 347242, 6 pages http://dx.doi.org/10.1155/2013/347242 Research Article Phylogenetic Relationships of Pseudorasbora, Pseudopungtungia,andPungtungia (Teleostei; Cypriniformes; Gobioninae) Inferred from Multiple Nuclear Gene Sequences Keun-Yong Kim,1 Myeong-Hun Ko,2 Huanzhang Liu,3 Qiongying Tang,3 Xianglin Chen,4 Jun-Ichi Miyazaki,5 and In-Chul Bang2 1 Department of Research and Development, NLP Co., Ltd., Busan 619-912, Republic of Korea 2 Department of Life Sciences & Biotechnology, Soonchunhyang University, Asan 336-745, Republic of Korea 3 Key Laboratory of Aquatic Biodiversity and Conservation, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China 4 School of Life Science, South China Normal University, Guangzhou 510631, China 5 Faculty of Education and Human Sciences, University of Yamanashi, Yamanashi 400-8510, Japan Correspondence should be addressed to In-Chul Bang; [email protected] Received 1 March 2013; Accepted 7 August 2013 Academic Editor: William Piel Copyright © 2013 Keun-Yong Kim et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Gobionine species belonging to the genera Pseudorasbora, Pseudopungtungia,andPungtungia (Teleostei; Cypriniformes; Cyprinidae) have been heavily studied because of problems on taxonomy, threats of extinction, invasion, and human health. Nucleotide sequences of three nuclear genes, that is, recombination activating protein gene 1 (rag1), recombination activating gene 2 (rag2), and early growth response 1 gene (egr1), from Pseudorasbora, Pseudopungtungia,andPungtungia species residing in China, Japan, and Korea, were analyzed to elucidate their intergeneric and interspecific phylogenetic relationships. -
Clonorchis Sinensis and Clonorchiasis: Epidemiology, Pathogenesis, Omics, Prevention and Control Ze-Li Tang1,2, Yan Huang1,2 and Xin-Bing Yu1,2*
Tang et al. Infectious Diseases of Poverty (2016) 5:71 DOI 10.1186/s40249-016-0166-1 SCOPINGREVIEW Open Access Current status and perspectives of Clonorchis sinensis and clonorchiasis: epidemiology, pathogenesis, omics, prevention and control Ze-Li Tang1,2, Yan Huang1,2 and Xin-Bing Yu1,2* Abstract Clonorchiasis, caused by Clonorchis sinensis (C. sinensis), is an important food-borne parasitic disease and one of the most common zoonoses. Currently, it is estimated that more than 200 million people are at risk of C. sinensis infection, and over 15 million are infected worldwide. C. sinensis infection is closely related to cholangiocarcinoma (CCA), fibrosis and other human hepatobiliary diseases; thus, clonorchiasis is a serious public health problem in endemic areas. This article reviews the current knowledge regarding the epidemiology, disease burden and treatment of clonorchiasis as well as summarizes the techniques for detecting C. sinensis infection in humans and intermediate hosts and vaccine development against clonorchiasis. Newer data regarding the pathogenesis of clonorchiasis and the genome, transcriptome and secretome of C. sinensis are collected, thus providing perspectives for future studies. These advances in research will aid the development of innovative strategies for the prevention and control of clonorchiasis. Keywords: Clonorchiasis, Clonorchis sinensis, Diagnosis, Pathogenesis, Omics, Prevention Multilingual abstracts snails); metacercaria (in freshwater fish); and adult (in Please see Additional file 1 for translations of the definitive hosts) (Fig. 1) [1, 2]. Parafossarulus manchour- abstract into the five official working languages of the icus (P. manchouricus) is considered the main first inter- United Nations. mediate host of C. sinensis in Korea, Russia, and Japan [3–6]. -
From Freshwater Fishes in Africa (Tomáš Scholz)
0 Organizer: Department of Botany and Zoology, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic Workshop venue: Instutute of Vertebrate Biology, Academy of Sciences CR Workshop date: 28 November 2018 Cover photo: Research on fish parasites throughout Africa: Fish collection in, Lake Turkana, Kenya; Fish examination in the Sudan; Teaching course on fish parasitology at the University of Khartoum, Sudan; Field laboratory in the Sudan Authors of cover photo: R. Blažek, A. de Chambrier and R. Kuchta All rights reserved. No part of this e-book may be reproduced or transmitted in any form or by any means without prior written permission of copyright administrator which can be contacted at Masaryk University Press, Žerotínovo náměstí 9, 601 77 Brno. © 2018 Masaryk University The stylistic revision of the publication has not been performed. The authors are fully responsible for the content correctness and layout of their contributions. ISBN 978-80-210-9079-8 ISBN 978-80-210-9083-5 (online: pdf) 1 Contents (We present only the first author in contents) ECIP Scientific Board ....................................................................................................................... 5 List of attendants ............................................................................................................................ 6 Programme ..................................................................................................................................... 7 Abstracts ........................................................................................................................................ -
The Genome 10K Project: a Way Forward
The Genome 10K Project: A Way Forward Klaus-Peter Koepfli,1 Benedict Paten,2 the Genome 10K Community of Scientists,Ã and Stephen J. O’Brien1,3 1Theodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, 199034 St. Petersburg, Russian Federation; email: [email protected] 2Department of Biomolecular Engineering, University of California, Santa Cruz, California 95064 3Oceanographic Center, Nova Southeastern University, Fort Lauderdale, Florida 33004 Annu. Rev. Anim. Biosci. 2015. 3:57–111 Keywords The Annual Review of Animal Biosciences is online mammal, amphibian, reptile, bird, fish, genome at animal.annualreviews.org This article’sdoi: Abstract 10.1146/annurev-animal-090414-014900 The Genome 10K Project was established in 2009 by a consortium of Copyright © 2015 by Annual Reviews. biologists and genome scientists determined to facilitate the sequencing All rights reserved and analysis of the complete genomes of10,000vertebratespecies.Since Access provided by Rockefeller University on 01/10/18. For personal use only. ÃContributing authors and affiliations are listed then the number of selected and initiated species has risen from ∼26 Annu. Rev. Anim. Biosci. 2015.3:57-111. Downloaded from www.annualreviews.org at the end of the article. An unabridged list of G10KCOS is available at the Genome 10K website: to 277 sequenced or ongoing with funding, an approximately tenfold http://genome10k.org. increase in five years. Here we summarize the advances and commit- ments that have occurred by mid-2014 and outline the achievements and present challenges of reaching the 10,000-species goal. We summarize the status of known vertebrate genome projects, recommend standards for pronouncing a genome as sequenced or completed, and provide our present and futurevision of the landscape of Genome 10K. -
Guide to Monogenoidea of Freshwater Fish of Palaeartic and Amur Regions
GUIDE TO MONOGENOIDEA OF FRESHWATER FISH OF PALAEARTIC AND AMUR REGIONS O.N. PUGACHEV, P.I. GERASEV, A.V. GUSSEV, R. ERGENS, I. KHOTENOWSKY Scientific Editors P. GALLI O.N. PUGACHEV D. C. KRITSKY LEDIZIONI-LEDIPUBLISHING © Copyright 2009 Edizioni Ledizioni LediPublishing Via Alamanni 11 Milano http://www.ledipublishing.com e-mail: [email protected] First printed: January 2010 Cover by Ledizioni-Ledipublishing ISBN 978-88-95994-06-2 All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, transmitted or utilized in any form or by any means, electonical, mechanical, photocopying or oth- erwise, without permission in writing from the publisher. Front cover: /Dactylogyrus extensus,/ three dimensional image by G. Strona and P. Galli. 3 Introduction; 6 Class Monogenoidea A.V. Gussev; 8 Subclass Polyonchoinea; 15 Order Dactylogyridea A.V. Gussev, P.I. Gerasev, O.N. Pugachev; 15 Suborder Dactylogyrinea: 13 Family Dactylogyridae; 17 Subfamily Dactylogyrinae; 13 Genus Dactylogyrus; 20 Genus Pellucidhaptor; 265 Genus Dogielius; 269 Genus Bivaginogyrus; 274 Genus Markewitschiana; 275 Genus Acolpenteron; 277 Genus Pseudacolpenteron; 280 Family Ancyrocephalidae; 280 Subfamily Ancyrocephalinae; 282 Genus Ancyrocephalus; 282 Subfamily Ancylodiscoidinae; 306 Genus Ancylodiscoides; 307 Genus Thaparocleidus; 308 Genus Pseudancylodiscoides; 331 Genus Bychowskyella; 332 Order Capsalidea A.V. Gussev; 338 Family Capsalidae; 338 Genus Nitzschia; 338 Order Tetraonchidea O.N. Pugachev; 340 Family Tetraonchidae; 341 Genus Tetraonchus; 341 Genus Salmonchus; 345 Family Bothitrematidae; 359 Genus Bothitrema; 359 Order Gyrodactylidea R. Ergens, O.N. Pugachev, P.I. Gerasev; 359 Family Gyrodactylidae; 361 Subfamily Gyrodactylinae; 361 Genus Gyrodactylus; 362 Genus Paragyrodactylus; 456 Genus Gyrodactyloides; 456 Genus Laminiscus; 457 Subclass Oligonchoinea A.V. -
Infecting the Gills of Abbottina Rivularis Basilewaky: Morphological and Molecular Data
第 42 卷 第 5 期 水 生 生 物 学 报 Vol. 42, No. 5 2018 年 9 月 ACTA HYDROBIOLOGICA SINICA Sep., 2018 doi: 10.7541/2018.117 SUPPLEMENTAL DESCRIPTION OF MYXOBOLUS HAICHENGENSIS CHEN, 1958 (MYXOZOA: MYXOSPOREA) INFECTING THE GILLS OF ABBOTTINA RIVULARIS BASILEWAKY: MORPHOLOGICAL AND MOLECULAR DATA LI Peng1, ZHAO Xin1, XI Bing-Wen1, 2 and XIE Jun2 (1. Wuxi Fisheries College, Nanjing Agricultural University, Wuxi 214081, China; 2. Key Laboratory of Freshwater Fisheries and Germplasm Resources Utilization, Ministry of Agriculture, Freshwater Fisheries Research Center, Chinese Academy of Fishery Sciences, Wuxi 214081, China) Abstract: Myxobolus haichengensis Chen, 1958 forms numerous small plasmodia on the gill filaments of wild cyprinid Abbottina rivularis Basilewaky. The species described originally was lacking important charac- ters, which made the accurate identification difficult. Here, we supplemented its characteristics with morpho- logical and molecular data. Plasmodia of M. haichengensis are oval. Mature spores are ellipsoidal-shaped in frontal view and fusiform-shaped in lateral view, measuring (10.8±0.7) μm (10.1—11.5 μm) long, (8.1± 0.5) μm (7.5—9.0 μm) wide, and (5.7±0.4) μm (5.2—9.0 μm) thick; two unequal polar capsule are pyriform with tapering anterior, large polar capsule averaging (4.7±0.5) μm (4.8—6.7 μm) long and (2.5±0.2) μm (3.2—4.3 μm) wide; small polar capsule averaging (4.4±0.2) μm (4.1—4.8 μm) long and (2.2±0.1) μm (2.0—2.5 μm) wide; polar filaments coil with four to five turns.