An Assessment of Exotic Species in the Tonle Sap Biosphere Reserve
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Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution
Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Dr. Bruce G. Baldwin, Chair Dr. John P. Huelsenbeck Dr. Brent D. Mishler Dr. Kipling W. Will Fall 2017 Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution Copyright 2017 by William Allen Freyman Abstract Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology University of California, Berkeley Dr. Bruce G. Baldwin, Chair Key evolutionary transitions have shaped the tree of life by driving the processes of spe- ciation and extinction. This dissertation aims to advance statistical and computational ap- proaches that model the timing and nature of these transitions over evolutionary trees. These methodological developments in phylogenetic comparative biology enable formal, model- based, statistical examinations of the macroevolutionary consequences of trait evolution. Chapter 1 presents computational tools for data mining the large-scale molecular sequence datasets needed for comparative phylogenetic analyses. I describe a novel metric, the miss- ing sequence decisiveness score (MSDS), which assesses the phylogenetic decisiveness of a matrix given the pattern of missing sequence data. In Chapter 2, I introduce a class of phylogenetic models of chromosome number evolution that accommodate both anagenetic and cladogenetic change. -
Inia Araguaiaensisand Inia Geoffrensis
Interactions between children, teenagers and botos (Inia araguaiaensis and Inia geoffrensis) in markets and fairs of Eastern Amazon Angélica Lúcia Figueiredo Rodrigues, Gabriel Melo-Santos, Iara Ramos-Santos, Ana Marta Andrade, Danilo Leal Arcoverde, Leonardo Sena, Maria Luisa da Silva Date of deposit 09 05 2019 Document version Author’s accepted manuscript Access rights © 2019, Elsevier Ltd. All rights reserved. This work is made available online in accordance with the publisher’s policies. This is the author created, accepted version manuscript following peer review and may differ slightly from the final published version. Citation for Figueiredo Rodrigues, A.L., Melos-Santos, G., and Ramos-Santos, published version I. (2019). Interactions between children, teenagers and botos (Inia araguaiaensis and Inia geoffrensis) in markets and fairs of Eastern Amazon. Ocean and Coastal Management, 172: pp137- 145. Link to published https://doi.org/j.ocecoaman.2019.02.005 version Full metadata for this item is available in St Andrews Research Repository at: https://research-repository.st-andrews.ac.uk/ 1 Abstract In this study we present the first record of interactions (ludic behavior, swimming and induced feeding) involving river dolphins known as botos (Inia sp.) and children/adolescents (from eight to 17 years old) at markets and fairs at the river front of two localities of Pará State, Brazil. We registered the reports of the participants using semi-structured interviews while they were working at the markets or when they were in the water to interact with river dolphins. We registered dolphins and human behavior using the ad libitum method. Most of the children interacting with botos were boys - we observed only two girls swimming with the dolphins. -
Strategies for Conservation and Restoration of Freshwater Fish Species in Korea
KOREAN JOURNAL OF ICHTHYOLOGY, Vol. 21 Supplement, 29-37, July 2009 Received : April 22, 2009 ISSN: 1225-8598 Revised : June 6, 2009 Accepted : June 20, 2009 Strategies for Conservation and Restoration of Freshwater Fish Species in Korea By Eon-Jong Kang*, In-Chul Bang1 and Hyun Yang2 Inland Aquaculture Research Center, National Fisheries Research and Development Institute, Busan 619-902, Korea 1Department of Marine Biotechnology, Soonchunhyang University, Asan 336-745, Korea 2Institute of Biodiversity Research, Jeonju 561-211, Korea ABSTRACT The tiny fragment of freshwater body is providing home for huge biodiversity and resour- ces for the existence of human. The competing demand for freshwater have been increased rapidly and it caused the declination of biodiversity in recent decades. Unlike the natural process of extinction in gradual progress, the current species extinction is accelerated by human activity. As a result many fish species are already extinct or alive only in captivity in the world and about fifty eight animal species are in endangered in Korea including eighteen freshwater species. Conservation of biodiversity is the pro- cess by which the prevention of loss or damage is attained, and is often associated with management of the natural environment. The practical action is classified into in-situ, or ex-situ depending on the location of the conservation effort. Recovery means the process by which the status of endangerment is improved to persist in the wild by re-introduction of species from ex-situ conservation population into nature or translocation of some population. However there are a lot of restrictions to complete it and successful results are known very rare in case. -
Teleostei: Cyprinidae: Acheilognathinae) from China
Zootaxa 3790 (1): 165–176 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3790.1.7 http://zoobank.org/urn:lsid:zoobank.org:pub:BD573A51-6656-4E86-87C2-2411443C38E5 Rhodeus albomarginatus, a new bitterling (Teleostei: Cyprinidae: Acheilognathinae) from China FAN LI1,3 & RYOICHI ARAI2 1Institute of Biodiversity Science, Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Fudan University, Shanghai 200433, China. E-mail: [email protected] 2Department of Zoology, University Museum, University of Tokyo, 7–3–1 Hongo, Bunkyo-ku, Tokyo. 113-0033, Japan. E-mail: [email protected] 3Corresponding author Abstract Rhodeus albomarginatus, new species, is described from the Lvjiang River, a tributary flowing into Poyang Lake of Yang- tze River basin, in Anhui Province, China. It is distinguished from all congeneric species by unique combination of char- acters: branched dorsal-fin rays 10; branched anal-fin rays 10–11; longest simple rays of dorsal and anal fins strong and stiff, distally segmented; pelvic fin rays i 6; longitudinal scale series 34–36; transverse scale series 11; pored scales 4–7; vertebrae 33–34; colour pattern of adult males (iris black, belly reddish-orange, central part of caudal fin red, dorsal and anal fins of males edged with white margin). Key words: Cyprinidae, Rhodeus albomarginatus, new species, Yangtze River, China Introduction Bitterling belong to the subfamily Acheilognathinae in Cyprinidae and include three genera, Acheilognathus, Rhodeus and Tanakia. The genus Rhodeus can be distinguished from the other two genera by having an incomplete lateral line, no barbels, and wing-like yolk sac projections in larvae (Arai & Akai, 1988). -
Phytochemical and Antimicrobial Studies of Ludwigia Hyssopifolia (G.Don) Exell Thet Su Hlaing1 Abstract Ludwigia Hyssopifolia (G.Don) Exell
2nd Myanmar Korea Conference Research Journal 433 Phytochemical and Antimicrobial Studies of Ludwigia hyssopifolia (G.Don) Exell Thet Su Hlaing1 Abstract Ludwigia hyssopifolia (G.Don) Exell. is annual herb belongs to the family Onagraceae in the order Myrtales. It is locally known as Taw-lay-hnyin. This plant was collected from Hinthada University Campus, Hinthada Township, Ayeyarwaddy Region. The morphological characters of vegetative and reproductive parts of the fresh specimens were investigated with the help of available literatures. The preliminary phytochemical tests were conducted from the powdered sample of the whole plant. The presence of alkaloid, phenolic compound, flavonoid, terpenoid, starch, reducing sugar, glycoside, saponin, tannin, α-amino acid and carbohydrate were found in the examination. Elemental analysis of powdered sample was examined by using EDXRF spectrometer. Percentage of calcium was higher than the other elements.Antimicrobial activities of various crude extracts were carried out by using paper disc diffusion assay with four test organisms. The methanolic extracts exhibited the highest against on different pathogenic microorganisms. These results showed that Ludwigia hyssopifolia (G.Don) Exell is endowed with many active constituents, minerals and antimicrobial properties that can be found useful in medicinal activities as well as possible application in nutrition and pharmacology. Key words : Ludwigia hyssopifolia (G.Don) Exell, phytochemical tests, antimicrobial activity Introduction Ludwigia hyssopifolia (G.Don) Exell. is commonly known as Taw-lay-hnyin in Myanmar and water primrose in English name. It is one of the traditionally used medicinal plants in Myanmar. It is distributed all over the world, particularly in both temperate and tropical regions of the world (Valkenburg, 2002). -
The Biology of Casmara Subagronoma (Lepidoptera
insects Article The Biology of Casmara subagronoma (Lepidoptera: Oecophoridae), a Stem-Boring Moth of Rhodomyrtus tomentosa (Myrtaceae): Descriptions of the Previously Unknown Adult Female and Immature Stages, and Its Potential as a Biological Control Candidate Susan A. Wineriter-Wright 1, Melissa C. Smith 1,* , Mark A. Metz 2 , Jeffrey R. Makinson 3 , Bradley T. Brown 3, Matthew F. Purcell 3, Kane L. Barr 4 and Paul D. Pratt 5 1 USDA-ARS Invasive Plant Research Laboratory, Fort Lauderdale, FL 33314, USA; [email protected] 2 USDA-ARS Systematic Entomology Lab, Beltsville, MD 20013-7012, USA; [email protected] 3 USDA-ARS Australian Biological Control Laboratory, CSIRO Health and Biosecurity, Dutton Park QLD 4102, Australia; jeff[email protected] (J.R.M.); [email protected] (B.T.B.); [email protected] (M.F.P.) 4 USDA-ARS Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL 32608, USA; [email protected] 5 USDA-ARS, Western Regional Research Center, Invasive Species and Pollinator Health Research Unit, 800 Buchanan Street, Albany, CA 94710, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-954-475-6549 Received: 27 August 2020; Accepted: 16 September 2020; Published: 23 September 2020 Simple Summary: Rhodomyrtus tomentosa is a perennial woody shrub throughout Southeast Asia. Due to its prolific flower and fruit production, it was introduced into subtropical areas such as Florida and Hawai’i, where it is now naturalized and invasive. In an effort to find sustainable means to control R. tomentosa, a large-scale survey was mounted for biological control organisms. -
Controlling Invasion of the Exotic Shrub (Mimosa Pigra) in Tropical Australian Wetlands
Controlling invasion of the exotic shrub (Mimosa pigra) in tropical Australian wetlands Michelle Marko Introduction to exotics in Australia Exotics have been introduced to Australia since the time of European settlement, beginning in the 1800s. Whether deliberately or accidentally introduced, some species such as feral cats (Felis catus), the cane toad (Bufo marinus), athel trees (Tamarix aphyllabitou) and the bitou bush (Chrysanthemoides monilifera), have wrought devastation. The majority of exotics have little impact on the natural ecosystem, but those that do (between 2-40 %) are aggressive invaders that can successfully compete for niches previously occupied by native species. Many exotics not currently problematic have the potential to cause serious damage in the future (Hobbs and Humphries 1995). These exotics negatively modify the richness and abundance of other species and therefore alter the function of the natural ecosystems (Storrs and Lonsdale 1995). In Australia, about 15% of the overall vascular flora are naturalized alien species, which is estimated to be 15,000-20,000 species (Environment Australia 1998). The Northern Territory, with around 4-5 % weeds, has the lowest percentage of any state or territory in Australia. However, in the Northern Territory, Sida sp., salvinia (Salvinia molesta), Hyptis suaveolens, water hyacinth (Eichhornia crassipes), and giant sensitive plant (Mimosa pigra) are considered major threats (CSIRO 1997). Mimosa pigra, in particular, is considered one of Australia's worst weeds of conservation. In this paper, I will discuss methods to control Mimosa pigra and some areas of future research. Invasiveness of Mimosa pigra Mimosa pigra L. (Mimosaceae) poses a tremendous threat to agriculture, the conservation of wetlands and land use practices of the Aboriginal people of Australia (Braithwaite et al. -
River Dolphin (Inia Geoffrensis, Sotalia Fluviatilis) Mortality Events Attributed to Artisanal Fisheries in the Western Brazilian Amazon
Aquatic Mammals 2013, 39(2), 116-124, DOI 10.1578/AM.39.2.2013.116 River Dolphin (Inia geoffrensis, Sotalia fluviatilis) Mortality Events Attributed to Artisanal Fisheries in the Western Brazilian Amazon Verónica Iriarte and Miriam Marmontel Aquatic Mammal Research Group, Mamirauá Institute for Sustainable Development (MISD), Estrada do Bexiga 2584, 69470-000 Tefé/AM Brazil E-mail: [email protected] Abstract riverine human populations, the negative reactions that cetacean presence causes to people could have a In the Western Brazilian Amazon, interactions of catalyst effect for the transition from “inciden- tal boto (Inia geoffrensis) and tucuxi (Sotalia fluvia- capture” to “intentional capture and competi- tor tilis) dolphins with fishing activities are common, removal.” Law enforcement and precautionary but the prevalence of incidental/intentional catches is measures through good fishing practices inside not known. This article describes incidental mor- dolphin critical foraging areas should be taken tality events and intentional killing of I. geoffren- together with fisheries’ managers and fishermen to sis and S. fluviatilis entangled in artisanal fishing start to develop multiple-species management and gear and the opportunistic use of carcasses as bait. ensure sustainable fishing practices. Between October 2010 and November 2011, sur- veys were conducted in waters of the lower Japurá River, between the Mamirauá and Amanã sus- Key Words: boto, Inia geoffrensis, tucuxi, Sotalia tainable development reserves. In order to obtain fluviatilis, incidental capture, gillnet, intentional information on interactions and to try to estab- killing, piracatinga, Calophysus macropterus lish a stranding/entanglement response program (SERP), informal conversations were exchanged Introduction with local inhabitants (n = 174). -
Water Mimosa (Neptunia Oleracea)
Invasive plant risk assessment Biosecurity Queensland Agriculture Fisheries and Department of Water mimosa NeNeptunia oleracea Dead and awake Neptunia plena Steve Csurhes First published 2008 Updated 2016 PR08–3686 © State of Queensland, 2016. The Queensland Government supports and encourages the dissemination and exchange of its information. The copyright in this publication is licensed under a Creative Commons Attribution 3.0 Australia (CC BY) licence. You must keep intact the copyright notice and attribute the State of Queensland as the source of the publication. Note: Some content in this publication may have different licence terms as indicated. For more information on this licence visit http://creativecommons.org/licenses/ by/3.0/au/deed.en" http://creativecommons.org/licenses/by/3.0/au/deed.en Contents Identity and taxonomy 2 Neptunia oleracea Lour. 2 Neptunia plena (L.) Benth. 2 Taxonomy and genetics 2 Descriptions (from Windler 1966) 3 Neptunia oleracea 3 Neptunia plena 4 Reproduction and dispersal 5 Seed longevity 5 Origin 5 History of introduction 5 Worldwide distribution 6 Neptunia oleracea 6 Neptunia plena 7 Distribution in Australia 8 Preferred habitat and climate 9 History as a weed overseas and interstate 9 Impact 10 N2 fixation 10 Effect on water resources 10 Economic benefits 10 Ponded pasture 10 Horticultural crop 11 Herbal medicine 11 Pest potential in Queensland 12 Biological control 12 References 13 Invasive plant risk assessment: Water mimosa Neptunia oleracea Dead and awake Neptunia plena 1 Identity and taxonomy Neptunia oleracea Lour. Synonyms: Acacia lacustris Desf., Desmanthus lacustris Willd., D. natans Willd., D. stolonifer DC, Mimosa aquatica Pers., M. -
Mimosa Diplotricha Giant Sensitive Plant
Invasive Pest Fact Sheet Asia - Pacific Forest Invasive Species Network A P F I S N Mimosa diplotricha Giant sensitive plant The Asia-Pacific Forest Invasive Species Network (APFISN) has been established as a response to the immense costs and dangers posed by invasive species to the sustainable management of forests in the Asia-Pacific region. APFISN is a cooperative alliance of the 33 member countries in the Asia-Pacific Forestry Commission (APFC) - a statutory body of the Food and Agricultural Organization of the United Nations (FAO). The network focuses on inter-country cooperation that helps to detect, prevent, monitor, eradicate and/or control forest invasive species in the Asia-Pacific region. Specific objectives of the network are: 1) raise awareness of invasive species throughout the Asia-Pacific region; 2) define and develop organizational structures; 3) build capacity within member countries and 4) develop and share databases and information. Distribution: South and Scientific name: Mimosa diplotricha C.Wright South-East Asia, the Pacific Synonym: Mimosa invisa Islands, northern Australia, South and Central America, the Common name: Giant sensitive plant, creeping Hawaiian Islands, parts of sensitive plant, nila grass. Africa, Nigeria and France. In India, it currently occurs Local name: Anathottawadi, padaincha (Kerala, throughout Kerala state and in India), banla saet (Cambodia), certain parts of the northeast, duri semalu (Malaysia), makahiyang lalaki especially the state of Assam. Its Flowers (Philippines), maiyaraap thao (Thailand), occurrence in other states is Cogadrogadro (Fiji). unknown and needs to be ascertained. M. diplotricha has Taxonomic position: not attained weed status in the Mimosa stem with prickles Division: Magnoliophyta Americas, Western Asia, East Class: Magnoliopsida, Order: Fabales Africa and Europe. -
Assessing the Risk to Neptunia Oleracea Lour. by the Moth, Neurostrota Gunniella (Busck), a Biological Control Agent for Mimosa Pigra L
Proceedings of the X International Symposium on Biological Control of Weeds 449 4-14 July 1999, Montana State University, Bozeman, Montana, USA Neal R. Spencer [ed.]. pp. 449-457 (2000) Assessing the Risk to Neptunia oleracea Lour. by the Moth, Neurostrota gunniella (Busck), a Biological Control Agent for Mimosa pigra L. I. W. FORNO1, J. FICHERA1, and S. PRIOR2 1CSIRO Entomology, PMB 3, Indooroopilly Q4069, Australia 2Present Address: Department of Natural Resources, Magazine Street, Sherwood Q4075, Australia Abstract Mimosa pigra L. is native to tropical America and is an aggressive, invasive weed on the flood plains of the Northern Territory of Australia and in several countries in Southeast Asia. Neurostrota gunniella (Busck) (Gracillariidae) was introduced into Australia from Mexico in 1986 for biological control of mimosa. It was released in 1989 following com- pletion of extensive host range studies which determined that the moth bred readily on M. pigra and to a much lesser extent on Neptunia dimorphantha Domin, N. gracilis Benth., N. major (Benth.) Windler, N. monosperma F. Muell. and M. pudica L. Damage to these non-target species was assessed as insignificant. Subsequently, this moth was introduced to Thailand where quarantine studies showed substantial attack on an important vegetable, N. oleracea Lour., which is a perennial, aquatic herb which either grows prostrate near the water’s edge or floats by forming spongy aerenchyma around the stems. N. gunniella was not released in Southeast Asia. Further studies showed that N. gunniella oviposits and breeds similarly on potted M. pigra and the terrestrial form of N. oleracea but fewer eggs are laid and larval mortality is much greater on N. -
And Intra-Species Replacements in Freshwater Fishes in Japan
G C A T T A C G G C A T genes Article Waves Out of the Korean Peninsula and Inter- and Intra-Species Replacements in Freshwater Fishes in Japan Shoji Taniguchi 1 , Johanna Bertl 2, Andreas Futschik 3 , Hirohisa Kishino 1 and Toshio Okazaki 1,* 1 Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan; [email protected] (S.T.); [email protected] (H.K.) 2 Department of Mathematics, Aarhus University, Ny Munkegade, 118, bldg. 1530, 8000 Aarhus C, Denmark; [email protected] 3 Department of Applied Statistics, Johannes Kepler University Linz, Altenberger Str. 69, 4040 Linz, Austria; [email protected] * Correspondence: [email protected] Abstract: The Japanese archipelago is located at the periphery of the continent of Asia. Rivers in the Japanese archipelago, separated from the continent of Asia by about 17 Ma, have experienced an intermittent exchange of freshwater fish taxa through a narrow land bridge generated by lowered sea level. As the Korean Peninsula and Japanese archipelago were not covered by an ice sheet during glacial periods, phylogeographical analyses in this region can trace the history of biota that were, for a long time, beyond the last glacial maximum. In this study, we analyzed the phylogeography of four freshwater fish taxa, Hemibarbus longirostris, dark chub Nipponocypris temminckii, Tanakia ssp. and Carassius ssp., whose distributions include both the Korean Peninsula and Western Japan. We found for each taxon that a small component of diverse Korean clades of freshwater fishes Citation: Taniguchi, S.; Bertl, J.; migrated in waves into the Japanese archipelago to form the current phylogeographic structure of Futschik, A.; Kishino, H.; Okazaki, T.