The Genus Pleospora S. 1. from Svalbard
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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
Phaeoseptaceae, Pleosporales) from China
Mycosphere 10(1): 757–775 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/17 Morphological and phylogenetic studies of Pleopunctum gen. nov. (Phaeoseptaceae, Pleosporales) from China Liu NG1,2,3,4,5, Hyde KD4,5, Bhat DJ6, Jumpathong J3 and Liu JK1*,2 1 School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, P.R. China 2 Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang 550006, P.R. China 3 Faculty of Agriculture, Natural Resources and Environment, Naresuan University, Phitsanulok 65000, Thailand 4 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 5 Mushroom Research Foundation, Chiang Rai 57100, Thailand 6 No. 128/1-J, Azad Housing Society, Curca, P.O., Goa Velha 403108, India Liu NG, Hyde KD, Bhat DJ, Jumpathong J, Liu JK 2019 – Morphological and phylogenetic studies of Pleopunctum gen. nov. (Phaeoseptaceae, Pleosporales) from China. Mycosphere 10(1), 757–775, Doi 10.5943/mycosphere/10/1/17 Abstract A new hyphomycete genus, Pleopunctum, is introduced to accommodate two new species, P. ellipsoideum sp. nov. (type species) and P. pseudoellipsoideum sp. nov., collected from decaying wood in Guizhou Province, China. The genus is characterized by macronematous, mononematous conidiophores, monoblastic conidiogenous cells and muriform, oval to ellipsoidal conidia often with a hyaline, elliptical to globose basal cell. Phylogenetic analyses of combined LSU, SSU, ITS and TEF1α sequence data of 55 taxa were carried out to infer their phylogenetic relationships. The new taxa formed a well-supported subclade in the family Phaeoseptaceae and basal to Lignosphaeria and Thyridaria macrostomoides. -
The Vegetation and Flora of Auyuittuq National Park Reserve, Baffin Island
THE VEGETATION AND FLORA OF AUYUITTOQ NATIONAL PARK RESERVE, BAFFIN ISLAND ;JAMES E. HINES AND STEVE MOORE DEPARTMENT OF RENEWABLE RESOURCES GOVERNMENT OF THE NORTHWEST TERRITORIES YELLOWKNIFE I NORTHWEST TERRITORIES I XlA 2L9 1988 A project completed under contract to Environment Canada, Canadian Parks Service, Prairie and Northern Region, Winnipeg, Manitoba. 0 ~tona Renewable Resources File Report No. 74 Renewabl• R•sources ~ Government of tha N p .0. Box l 310 Ya\lowknif e, NT XlA 2L9 ii! ABSTRACT The purposes of this investigation were to describe the flora and major types of plant communities present in Auyuittuq National Park Reserve, Baffin Island, and to evaluate factors influencing the distribution of the local vegetation. Six major types of plant communities were recognized based on detailed descriptions of the physical environment, flora, and ground cover of shrubs, herbs, bryophytes, ·and lichens at 100 sites. Three highly interrelated variables (elevation, soil moisture, and texture of surficial deposits) seemed to be important in determining the distribution and abundance of plant communities. Continuous vegetation developed mainly at low elevations on mesic to wet, fine-textured deposits. Wet tundra, characterized by abundant cover of shrubs, grasses, sedges, and forbs, occurred most frequently on wet, fine-textured marine and fluvial sediments. Dwarf shrub-qram.inoid comm.unities were comprised of abundant shrubs, grasses, sedges and forbs and were found most frequently below elevations of 400 m on mesic till or colluvial deposits. Dwarf shrub comm.unities were characterized by abundant dwarf shrub and lichen cover. They developed at similar elevations and on similar types of surficial deposits as dwarf-shrub graminoid communities. -
Molecular Systematics of the Marine Dothideomycetes
available online at www.studiesinmycology.org StudieS in Mycology 64: 155–173. 2009. doi:10.3114/sim.2009.64.09 Molecular systematics of the marine Dothideomycetes S. Suetrong1, 2, C.L. Schoch3, J.W. Spatafora4, J. Kohlmeyer5, B. Volkmann-Kohlmeyer5, J. Sakayaroj2, S. Phongpaichit1, K. Tanaka6, K. Hirayama6 and E.B.G. Jones2* 1Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand; 2Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand; 3National Center for Biothechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.; 4Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331, U.S.A.; 5Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.; 6Faculty of Agriculture & Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan *Correspondence: E.B. Gareth Jones, [email protected] Abstract: Phylogenetic analyses of four nuclear genes, namely the large and small subunits of the nuclear ribosomal RNA, transcription elongation factor 1-alpha and the second largest RNA polymerase II subunit, established that the ecological group of marine bitunicate ascomycetes has representatives in the orders Capnodiales, Hysteriales, Jahnulales, Mytilinidiales, Patellariales and Pleosporales. Most of the fungi sequenced were intertidal mangrove taxa and belong to members of 12 families in the Pleosporales: Aigialaceae, Didymellaceae, Leptosphaeriaceae, Lenthitheciaceae, Lophiostomataceae, Massarinaceae, Montagnulaceae, Morosphaeriaceae, Phaeosphaeriaceae, Pleosporaceae, Testudinaceae and Trematosphaeriaceae. Two new families are described: Aigialaceae and Morosphaeriaceae, and three new genera proposed: Halomassarina, Morosphaeria and Rimora. -
Lichens and Vascular Plants in Duvefjorden Area on Nordaust- Landet, Svalbard
CZECH POLAR REPORTS 9 (2): 182-199, 2019 Lichens and vascular plants in Duvefjorden area on Nordaust- landet, Svalbard Liudmila Konoreva1*, Mikhail Kozhin1,2, Sergey Chesnokov3, Soon Gyu Hong4 1Avrorin Polar-Alpine Botanical Garden-Institute of Kola Scientific Centre of RAS, 184250 Kirovsk, Murmansk Region, Russia 2Department of Geobotany, Faculty of Biology, Lomonosov Moscow State University, Leninskye Gory 1–12, GSP–1, 119234 Moscow, Russia 3Komarov Botanical Institute RAS, Professor Popov St. 2, 197376 St. Petersburg, Russia 4Division of Polar Life Sciences, Korea Polar Research Institute, 26, Songdomirae-ro, Yeonsu-gu, Incheon 21900, Republic of Korea Abstract Floristic check-lists were compiled for the first time for Duvefjorden Bay on Nordaust- landet, Svalbard, based on field work in July 2012 and on data from literature and herbaria. The check-lists include 172 species of lichens and 51 species of vascular plants. Several species rare in Svalbard and in the Arctic were discovered: Candelariella borealis was new to Svalbard. 51 lichen species were newly recorded on Nordaustlandet and 131 lichen species were observed in the Duvefjorden area for the first time. Among lichen species rare in Svalbard and in the Arctic the following can be mentioned: Caloplaca magni-filii, C. nivalis, Lecidea silacea, Phaeophyscia nigricans, Polyblastia gothica, Protothelenella sphinctrinoidella, Rinodina conradii, Stenia geophana, and Tetramelas pulverulentus. Two species of vascular plants, Saxifraga svalbardensis and S. hyperborea, were found new to the Duvefjorden area. The investigated flora is represented mostly by species widespread in Svalbard and in the Arctic. Although Duvefjorden area is situated in the northernmost part of Svalbard, its flora is characterized by relatively high diversity of vascular plants and lichens. -
Fungal Cannons: Explosive Spore Discharge in the Ascomycota Frances Trail
MINIREVIEW Fungal cannons: explosive spore discharge in the Ascomycota Frances Trail Department of Plant Biology and Department of Plant Pathology, Michigan State University, East Lansing, MI, USA Correspondence: Frances Trail, Department Abstract Downloaded from https://academic.oup.com/femsle/article/276/1/12/593867 by guest on 24 September 2021 of Plant Biology, Michigan State University, East Lansing, MI 48824, USA. Tel.: 11 517 The ascomycetous fungi produce prodigious amounts of spores through both 432 2939; fax: 11 517 353 1926; asexual and sexual reproduction. Their sexual spores (ascospores) develop within e-mail: [email protected] tubular sacs called asci that act as small water cannons and expel the spores into the air. Dispersal of spores by forcible discharge is important for dissemination of Received 15 June 2007; revised 28 July 2007; many fungal plant diseases and for the dispersal of many saprophytic fungi. The accepted 30 July 2007. mechanism has long been thought to be driven by turgor pressure within the First published online 3 September 2007. extending ascus; however, relatively little genetic and physiological work has been carried out on the mechanism. Recent studies have measured the pressures within DOI:10.1111/j.1574-6968.2007.00900.x the ascus and quantified the components of the ascus epiplasmic fluid that contribute to the osmotic potential. Few species have been examined in detail, Editor: Richard Staples but the results indicate diversity in ascus function that reflects ascus size, fruiting Keywords body type, and the niche of the particular species. ascus; ascospore; turgor pressure; perithecium; apothecium. 2 and 3). Each subphylum contains members that forcibly Introduction discharge their spores. -
AR TICLE One Fungus = One Name: DNA and Fungal Nomenclature
GRLLPDIXQJXV IMA FUNGUS · VOLUME 2 · NO 2: 113–120 One Fungus = One Name: DNA and fungal nomenclature twenty years after ARTICLE PCR -RKQ:7D\ORU 8QLYHUVLW\RI&DOLIRUQLD%HUNHOH\.RVKODQG+DOO%HUNHOH\&$86$HPDLOMWD\ORU#EHUNHOH\HGX Abstract: 6RPHIXQJLZLWKSOHRPRUSKLFOLIHF\FOHVVWLOOEHDUWZRQDPHVGHVSLWHPRUHWKDQ\HDUVRIPROHFXODU Key words: SK\ORJHQHWLFVWKDWKDYHVKRZQKRZWRPHUJHWKHWZRV\VWHPVRIFODVVL¿FDWLRQWKHDVH[XDO³'HXWHURP\FRWD´ $PVWHUGDP'HFODUDWLRQ DQGWKHVH[XDO³(XP\FRWD´0\FRORJLVWVKDYHEHJXQWRÀRXWQRPHQFODWRULDOUHJXODWLRQVDQGXVHMXVWRQHQDPH (1$6 IRU RQH IXQJXV 7KH ,QWHUQDWLRQDO &RGH RI %RWDQLFDO 1RPHQFODWXUH ,&%1 PXVW FKDQJH WR DFFRPPRGDWH 0\FR&RGH FXUUHQWSUDFWLFHRUEHFRPHLUUHOHYDQW7KHIXQGDPHQWDOGLIIHUHQFHLQWKHVL]HRIIXQJLDQGSODQWVKDGDUROHLQ nomenclature WKHRULJLQRIGXDOQRPHQFODWXUHDQGFRQWLQXHVWRKLQGHUWKHGHYHORSPHQWRIDQ,&%1WKDWIXOO\DFFRPPRGDWHV pleomorphic fungi PLFURVFRSLFIXQJL$QRPHQFODWRULDOFULVLVDOVRORRPVGXHWRHQYLURQPHQWDOVHTXHQFLQJZKLFKVXJJHVWVWKDW PRVWIXQJLZLOOKDYHWREHQDPHGZLWKRXWDSK\VLFDOVSHFLPHQ0\FRORJ\PD\QHHGWREUHDNIURPWKH,&%1 DQGFUHDWHD0\FR&RGHWRDFFRXQWIRUIXQJLNQRZQRQO\IURPHQYLURQPHQWDOQXFOHLFDFLGVHTXHQFH LH(1$6 IXQJL Article info:6XEPLWWHG-XQH$FFHSWHG-XQH3XEOLVKHG-XO\ INTRODUCTION papaveracea and the other as an anamorph, Brachycladium papaveris ,QGHUELW]LQet al )LJ 7KH¿IWHHQRWKHU It has been a bit over two decades since the polymerase chain members of the committee, eleven academics and four very UHDFWLRQ 3&5 FKDQJHGHYROXWLRQDU\ELRORJ\LQJHQHUDODQG knowledgeable staff, stared at me in disbelief when I said that IXQJDO V\VWHPDWLFV LQ SDUWLFXODU -
Accepted Version
This document is the accepted manuscript version of the following article: Kern, R., Hotter, V., Frossard, A., Albrecht, M., Baum, C., Tytgat, B., … Karsten, U. (2019). Comparative vegetation survey with focus on cryptogamic covers in the high Arctic along two differing catenas. Polar Biology, 42(11), 2131-2145. https://doi.org/10.1007/s00300-019-02588-z 1 1 ORIGINAL PAPER 2 Comparative vegetation survey with focus on cryptogamic covers 3 in the high Arctic along two differing catenas 4 5 Ramona Kern1, Vivien Hotter1, Aline Frossard2, Martin Albrecht1, Christel Baum6, 6 Bjorn Tytgat3, Lotte De Maeyer3, David Velazquez4, Christophe Seppey5, Beat Frey2, 7 Michael Plötze7, Elie Verleyen3, Antonio Quesada4, Mette M. Svenning5, Karin Glaser1, 8 Ulf Karsten1* 9 10 1University of Rostock, Institute of Biological Sciences, Applied Ecology and Phycology, D-18059 Rostock, 11 Germany 12 2 Swiss Federal Research Institute WSL, CH-8903 Birmensdorf, Switzerland 13 3Ghent University, Department of Biology, Protistology and Aquatic Ecology, B-9000 Gent, Belgium 14 4Universidad Autónoma de Madrid, Department of Biology, E-28049 Madrid, Spain 15 5UiT The Arctic University of Norway, Department of Arctic and Marine Biology, Faculty of Biosciences, 16 Fisheries and Economics, N-9037 Tromsø, Norway. 17 6University of Rostock, Soil Sciences, Faculty of Agricultural and Environmental Sciences, D-18059 Rostock, 18 Germany 19 7ETH Zurich, Institute for Geotechnical Engineering, ClayLab, CH-8093 Zürich, Switzerland 20 21 22 *Correspondence: 23 Corresponding Author 24 Prof. Dr. Ulf Karsten, email: [email protected] 25 26 27 Keywords 28 Arctic, Svalbard, cryptogamic cover, soil, moisture, tundra, vegetation survey 29 30 31 Abstract 32 Although cryptogamic covers are important ecosystem engineers in high Arctic tundra, they 33 were often neglected in vegetation surveys. -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
Journal of Agmcetmlesearch Vol
JOURNAL OF AGMCETMLESEARCH VOL. 61 WASHINGTON, D. C, DECEMBER 15, 1940 No. 12 STEMPHYLIUM LEAF SPOT OF RED CLOVER AND ALFALFA1 By OLIVER F. SMITH Associate pathologist, Division of Forage Crops and Diseases, Bureau of Plant Industry, United States Department of Agriculture INTRODUCTION One of the foliage diseases of red clover {Trifolium pratense L.) and alfalfa {Medicago sativa L.) is caused by a fungus formerly known as a Macrosporium, but more recently as a species of Stemphylium. The causal fungus, which is characterized by echinulate conidia and has an ascigerous stage belonging in the genus Pleospora, has been known previously as a parasite of red clover and alfalfa, but unfortunately has sometimes been confused with Macrosporium sarcinaeforme Cav., a fungus that has smooth-walled conidia, has no known ascigerous stage, and is known to occur only on red clover in nature. The in- vestigation reported in this paper was designed to trace the life history of the echinulate-spored fungus and to clarify any confusion that may exist in the literature regarding its identity and relationship to M. sarcinaeforme and other similar fungi on red clover and alfalfa. Krakover (Oy and Horsfall (6) have shown that the fungus on red clover has smooth-walled conidia and corresponds very well with Cavarais original description of that species. Wiltshire (24-) has trans- ferred this fungus to the genus Stemphylium, and according to him, it should be known as S. sarcinaeforme (Cav.) Wiltshire. Gentner (ô) reported the echinulate-spored fungus to be the cause of a disease of both red clover and alfalfa in Germany, but he misidentified it as Macrosporium sarcinaeforme. -
Ecological Relevance of Abundant and Rare Taxa in a Highly-Diverse Elastic
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.04.433984; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Title 2 Ecological relevance of abundant and rare taxa in a highly-diverse elastic 3 hypersaline microbial mat, using a small-scale sampling 4 5 Authors 6 Laura Espinosa-Asuar1,*, Camila Monroy1, David Madrigal-Trejo1, Marisol Navarro- 7 Miranda1, Jazmín Sánchez-Pérez1, Jhoseline Muñoz1, Juan Diego Villar2, Julián 8 Cifuentes2, Maria Kalambokidis1, Diego A. Esquivel-Hernández1, Mariette 9 Viladomat1, Ana Elena Escalante-Hernández3 , Patricia Velez4, Mario Figueroa5, 10 Santiago Ramírez Barahona4, Jaime Gasca-Pineda1, Luis E. Eguiarte1and Valeria 11 Souza1,*. 12 13 Affiliations 14 1Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional 15 Autónoma de México, AP 70-275, Coyoacán 04510, Ciudad de México, México 16 2Pontificia Universidad Javeriana, Bogotá D.C., Colombia 17 3Laboratorio Nacional de Ciencias de la Sostenibilidad, Instituto de Ecología, 18 Universidad Nacional Autónoma de México, AP 70-275, Coyoacán 04510, Ciudad 19 de México, México, City, México 20 4Departamento de Botánica, Instituto de Biología, Universidad Nacional Autónoma 21 de México, Coyoacán 04510, Ciudad de México, México 22 5Facultad de Química, Universidad Nacional Autónoma de México, Coyoacán 23 04510, Ciudad de México, México 24 *corresponding authors: 25 [email protected]; [email protected] 26 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.04.433984; this version posted March 10, 2021. -
General Ecology and Vascular Plants of the Hazencamp Area* D
GENERAL ECOLOGY AND VASCULAR PLANTS OF THE HAZENCAMP AREA* D. B. 0. Savile General description AZEN CAMP,at 81”49’N., 71”18W., lies on a small sandy point on the H northwest shore of Lake Hazen, in northeast Ellesmere Island. Lake Hazen stands at 158 m. above sea-level, extends 78 km. ENE to WSW, and has a maximum width of 11 km. It lies at the northern edge of a plateau bounded on the south by the Victoria and Albert Mountains and on the north by the United States Range. The Garfield Range, a southern outlier of the United States Range, extends to within 4 km. of Hazen Camp. The high mountain ranges and icefields, with extensive areas over 2000 m., and smaller hills effectively protect the land about Lake Hazen from incursions of unmodified cold air, and induce a summer climate that is very exceptional for this latitude. On the other hand the lake itself is large enough to keep air temperatures adjacent to the shore appreciably below those prevailing a few kilometres away. The geologyof northeasternEllesmere Island has recently been described by Christie (1962). The lowlands at Hazen Camp are underlain by Mesozoic and Permian sediments, mainly sandstone and shale. These sediments outcrop conspicuously on Blister Hill (altitude 400 m.), 1.5 to 2.7 km. west of the camp; andon a seriesof small but steep foothills running southwest to northeast along a fault and passing 2.5 to 3 kn. northwest of the camp. These rocks weather rapidly. Consequently sand and clay in varying proportions are plentiful in the camp area.