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Phaeoseptaceae, Pleosporales) from China
Mycosphere 10(1): 757–775 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/17 Morphological and phylogenetic studies of Pleopunctum gen. nov. (Phaeoseptaceae, Pleosporales) from China Liu NG1,2,3,4,5, Hyde KD4,5, Bhat DJ6, Jumpathong J3 and Liu JK1*,2 1 School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 611731, P.R. China 2 Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang 550006, P.R. China 3 Faculty of Agriculture, Natural Resources and Environment, Naresuan University, Phitsanulok 65000, Thailand 4 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 5 Mushroom Research Foundation, Chiang Rai 57100, Thailand 6 No. 128/1-J, Azad Housing Society, Curca, P.O., Goa Velha 403108, India Liu NG, Hyde KD, Bhat DJ, Jumpathong J, Liu JK 2019 – Morphological and phylogenetic studies of Pleopunctum gen. nov. (Phaeoseptaceae, Pleosporales) from China. Mycosphere 10(1), 757–775, Doi 10.5943/mycosphere/10/1/17 Abstract A new hyphomycete genus, Pleopunctum, is introduced to accommodate two new species, P. ellipsoideum sp. nov. (type species) and P. pseudoellipsoideum sp. nov., collected from decaying wood in Guizhou Province, China. The genus is characterized by macronematous, mononematous conidiophores, monoblastic conidiogenous cells and muriform, oval to ellipsoidal conidia often with a hyaline, elliptical to globose basal cell. Phylogenetic analyses of combined LSU, SSU, ITS and TEF1α sequence data of 55 taxa were carried out to infer their phylogenetic relationships. The new taxa formed a well-supported subclade in the family Phaeoseptaceae and basal to Lignosphaeria and Thyridaria macrostomoides. -
Molecular Systematics of the Marine Dothideomycetes
available online at www.studiesinmycology.org StudieS in Mycology 64: 155–173. 2009. doi:10.3114/sim.2009.64.09 Molecular systematics of the marine Dothideomycetes S. Suetrong1, 2, C.L. Schoch3, J.W. Spatafora4, J. Kohlmeyer5, B. Volkmann-Kohlmeyer5, J. Sakayaroj2, S. Phongpaichit1, K. Tanaka6, K. Hirayama6 and E.B.G. Jones2* 1Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand; 2Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand; 3National Center for Biothechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.; 4Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331, U.S.A.; 5Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.; 6Faculty of Agriculture & Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan *Correspondence: E.B. Gareth Jones, [email protected] Abstract: Phylogenetic analyses of four nuclear genes, namely the large and small subunits of the nuclear ribosomal RNA, transcription elongation factor 1-alpha and the second largest RNA polymerase II subunit, established that the ecological group of marine bitunicate ascomycetes has representatives in the orders Capnodiales, Hysteriales, Jahnulales, Mytilinidiales, Patellariales and Pleosporales. Most of the fungi sequenced were intertidal mangrove taxa and belong to members of 12 families in the Pleosporales: Aigialaceae, Didymellaceae, Leptosphaeriaceae, Lenthitheciaceae, Lophiostomataceae, Massarinaceae, Montagnulaceae, Morosphaeriaceae, Phaeosphaeriaceae, Pleosporaceae, Testudinaceae and Trematosphaeriaceae. Two new families are described: Aigialaceae and Morosphaeriaceae, and three new genera proposed: Halomassarina, Morosphaeria and Rimora. -
AR TICLE One Fungus = One Name: DNA and Fungal Nomenclature
GRLLPDIXQJXV IMA FUNGUS · VOLUME 2 · NO 2: 113–120 One Fungus = One Name: DNA and fungal nomenclature twenty years after ARTICLE PCR -RKQ:7D\ORU 8QLYHUVLW\RI&DOLIRUQLD%HUNHOH\.RVKODQG+DOO%HUNHOH\&$86$HPDLOMWD\ORU#EHUNHOH\HGX Abstract: 6RPHIXQJLZLWKSOHRPRUSKLFOLIHF\FOHVVWLOOEHDUWZRQDPHVGHVSLWHPRUHWKDQ\HDUVRIPROHFXODU Key words: SK\ORJHQHWLFVWKDWKDYHVKRZQKRZWRPHUJHWKHWZRV\VWHPVRIFODVVL¿FDWLRQWKHDVH[XDO³'HXWHURP\FRWD´ $PVWHUGDP'HFODUDWLRQ DQGWKHVH[XDO³(XP\FRWD´0\FRORJLVWVKDYHEHJXQWRÀRXWQRPHQFODWRULDOUHJXODWLRQVDQGXVHMXVWRQHQDPH (1$6 IRU RQH IXQJXV 7KH ,QWHUQDWLRQDO &RGH RI %RWDQLFDO 1RPHQFODWXUH ,&%1 PXVW FKDQJH WR DFFRPPRGDWH 0\FR&RGH FXUUHQWSUDFWLFHRUEHFRPHLUUHOHYDQW7KHIXQGDPHQWDOGLIIHUHQFHLQWKHVL]HRIIXQJLDQGSODQWVKDGDUROHLQ nomenclature WKHRULJLQRIGXDOQRPHQFODWXUHDQGFRQWLQXHVWRKLQGHUWKHGHYHORSPHQWRIDQ,&%1WKDWIXOO\DFFRPPRGDWHV pleomorphic fungi PLFURVFRSLFIXQJL$QRPHQFODWRULDOFULVLVDOVRORRPVGXHWRHQYLURQPHQWDOVHTXHQFLQJZKLFKVXJJHVWVWKDW PRVWIXQJLZLOOKDYHWREHQDPHGZLWKRXWDSK\VLFDOVSHFLPHQ0\FRORJ\PD\QHHGWREUHDNIURPWKH,&%1 DQGFUHDWHD0\FR&RGHWRDFFRXQWIRUIXQJLNQRZQRQO\IURPHQYLURQPHQWDOQXFOHLFDFLGVHTXHQFH LH(1$6 IXQJL Article info:6XEPLWWHG-XQH$FFHSWHG-XQH3XEOLVKHG-XO\ INTRODUCTION papaveracea and the other as an anamorph, Brachycladium papaveris ,QGHUELW]LQet al )LJ 7KH¿IWHHQRWKHU It has been a bit over two decades since the polymerase chain members of the committee, eleven academics and four very UHDFWLRQ 3&5 FKDQJHGHYROXWLRQDU\ELRORJ\LQJHQHUDODQG knowledgeable staff, stared at me in disbelief when I said that IXQJDO V\VWHPDWLFV LQ SDUWLFXODU -
Stemphylium Revisited
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 87: 77–103 (2017). Stemphylium revisited J.H.C. Woudenberg1, B. Hanse2, G.C.M. van Leeuwen3, J.Z. Groenewald1, and P.W. Crous1,4,5* 1Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2IRS, P.O. Box 32, 4600 AA Bergen op Zoom, The Netherlands; 3National Plant Protection Organization (NPPO-NL), P.O. Box 9102, 6700 HC, Wageningen, The Netherlands; 4Wageningen University, Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands; 5Department of Microbiology and Plant Pathology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, South Africa *Correspondence: P.W. Crous, [email protected] Abstract: In 2007 a new Stemphylium leaf spot disease of Beta vulgaris (sugar beet) spread through the Netherlands. Attempts to identify this destructive Stemphylium sp. in sugar beet led to a phylogenetic revision of the genus. The name Stemphylium has been recommended for use over that of its sexual morph, Pleospora, which is polyphyletic. Stemphylium forms a well-defined monophyletic genus in the Pleosporaceae, Pleosporales (Dothideomycetes), but lacks an up-to-date phylogeny. To address this issue, the internal transcribed spacer 1 and 2 and intervening 5.8S nr DNA (ITS) of all available Stemphylium and Pleospora isolates from the CBS culture collection of the Westerdijk Institute (N = 418), and from 23 freshly collected isolates obtained from sugar beet and related hosts, were sequenced to construct an overview phylogeny (N = 350). Based on their phylogenetic informativeness, parts of the protein-coding genes calmodulin and glyceraldehyde-3-phosphate dehydro- genase were also sequenced for a subset of isolates (N = 149). -
The Dispersal Pattern of Thekopsora Minima in Wild Blueberry Determined by a Molecular Detection Method Nghi Nguyen [email protected]
The University of Maine DigitalCommons@UMaine Electronic Theses and Dissertations Fogler Library Summer 8-23-2019 The dispersal pattern of Thekopsora minima in wild blueberry determined by a molecular detection method Nghi Nguyen [email protected] Follow this and additional works at: https://digitalcommons.library.umaine.edu/etd Part of the Agricultural Science Commons, Botany Commons, Molecular Genetics Commons, Plant Biology Commons, and the Plant Pathology Commons Recommended Citation Nguyen, Nghi, "The dispersal pattern of Thekopsora minima in wild blueberry determined by a molecular detection method" (2019). Electronic Theses and Dissertations. 3065. https://digitalcommons.library.umaine.edu/etd/3065 This Open-Access Thesis is brought to you for free and open access by DigitalCommons@UMaine. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of DigitalCommons@UMaine. For more information, please contact [email protected]. THE DISPERSAL PATTERN OF THEKOPSORA MINIMA IN WILD BLUEBERRY DETERMINED BY A MOLECULAR DETECTION METHOD Nghi S. Nguyen B.S University of North Texas, 2013 A THESIS Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science (in Botany and Plant Pathology) The Graduate School The University of Maine August 2019 Advisory Committee: Seanna Annis, Ph.D., Associate Professor of Mycology, Advisor, School of Biology and Ecology, Advisor David Yarborough, Ph.D., Wild Blueberry Specialist, Professor of Horticulture, School of Food and Agriculture Jianjun (Jay) Hao, Ph. D, Associate Professor of Plant Pathology, School of Food and Agriculture Ek Han Tan, Ph. D, Assistant Professor of Plant Genetics, School of Biology and Ecology © 2019 NGHI S. -
The Family Pleosporaceae: Intergeneric Relationships and Phylogenetic Perspectives Based on Sequence Analyses of Partial 28S Rdna
Mycologia, 98(4), 2006, pp. 571–583. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 The family Pleosporaceae: intergeneric relationships and phylogenetic perspectives based on sequence analyses of partial 28S rDNA Rampai Kodsueb niothelia, which is probably polyphyletic. Anamorphic Department of Biology, Faculty of Science, Chiang Mai characters appear to be significant (especially in University, Chiang Mai, Thailand Cochliobolus) while ascospore morphologies, such as Vijaykrishna Dhanasekaran shape and color and substrate occurrence are poor Centre for Research in Fungal Diversity, Department of indicators of phylogenetic relationships among these Ecology & Biodiversity, The University of Hong Kong, loculoascomycetes. Pokfulam Road, Hong Kong Key words: anamorphs, ascospore morphology, Andre´ Aptroot Loculoascomycetes, phylogeny, Pleospora, polyphy- Centraalbureau voor Schimmelcultures, P.O. Box letic, ribosomal DNA 85167, 3508 AD Utrecht, The Netherlands Saisamorn Lumyong INTRODUCTION Department of Biology, Faculty of Science, Chiang Mai The largest family within the Pleosporales, Pleospor- University, Chiang Mai, Thailand aceae, comprises 17 genera and 111 species (Kirk et al Eric H.C. McKenzie 2001). Species are parasites or saprobes on wood and Landcare Research, Private Bag 92170, Auckland, dead herbaceous stems or leaves (Sivanesan 1984). New Zealand The classification in the Pleosporaceae has been Kevin D. Hyde based primarily on the Pleospora type of centrum Rajesh Jeewon1 development (Dong et al 1998) and asci that are Centre for Research in Fungal Diversity, Department of interspersed with pseudoparaphyses in the asco- Ecology & Biodiversity, The University of Hong Kong, stroma. These pseudoparaphyses originate above the Pokfulam Road, Hong Kong hymenial layer and grow downward among the asci to fuse at the base of the locule (Wehmeyer 1975). -
Multi-Locus Phylogeny of Pleosporales: a Taxonomic, Ecological and Evolutionary Re-Evaluation
available online at www.studiesinmycology.org StudieS in Mycology 64: 85–102. 2009. doi:10.3114/sim.2009.64.04 Multi-locus phylogeny of Pleosporales: a taxonomic, ecological and evolutionary re-evaluation Y. Zhang1, C.L. Schoch2, J. Fournier3, P.W. Crous4, J. de Gruyter4, 5, J.H.C. Woudenberg4, K. Hirayama6, K. Tanaka6, S.B. Pointing1, J.W. Spatafora7 and K.D. Hyde8, 9* 1Division of Microbiology, School of Biological Sciences, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, P.R. China; 2National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.; 3Las Muros, Rimont, Ariège, F 09420, France; 4CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands; 5Plant Protection Service, P.O. Box 9102, 6700 HC Wageningen, The Netherlands; 6Faculty of Agriculture & Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan; 7Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 93133, U.S.A.; 8School of Science, Mae Fah Luang University, Tasud, Muang, Chiang Rai 57100, Thailand; 9International Fungal Research & Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming, Yunnan, P.R. China 650034 *Correspondence: Kevin D. Hyde, [email protected] Abstract: Five loci, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, are used for analysing 129 pleosporalean taxa representing 59 genera and 15 families in the current classification ofPleosporales . The suborder Pleosporineae is emended to include four families, viz. Didymellaceae, Leptosphaeriaceae, Phaeosphaeriaceae and Pleosporaceae. In addition, two new families are introduced, i.e. -
Characterization of the Stemphylium Blight Pathogens and Their Effect on Lentil Yield
Characterization of the stemphylium blight pathogens and their effect on lentil yield A Thesis Submitted to the College of Graduate Studies and Research In Partial Fulfillment of the Requirements For the Degree of Masters of Science In the Department of Plant Sciences University of Saskatchewan Saskatoon By Kiela B. Caudillo-Ruiz © Copyright Kiela B. Caudillo-Ruiz, July, 2016. All rights reserved. PERMISSION TO USE In presenting this thesis in partial fulfillment of the requirements for a postgraduate degree from the University of Saskatchewan, I agree that the libraries of this University may make it freely available for inspection. I further agree that permission for copying of this thesis in any manner, in whole or in part, for scholarly purposes may be granted by the professor or professors who supervised my thesis work or, in their absence, by the Head of the Department or the Dean of the College in which my thesis work was done. It is understood that any copying or publication or use of this thesis or parts thereof for financial gain shall not be allowed without my written permission. It is also understood that due recognition shall be given to me and to the University of Saskatchewan in any scholarly use which may be made of any material in my thesis. Requests for permission to copy or to make other use of material in this thesis in whole or part should be addressed to: Head of the Department of Plant Sciences University of Saskatchewan 51 Campus Drive Saskatoon, Saskatchewan S7N 5A8 i ABSTRACT The disease stemphylium blight has become common in lentil fields in Saskatchewan, but the effect of this disease on developing lentil plants, has not been studied under field conditions. -
Some Dictyosporous Genera and Species of Pleosporales in North America
Some Dictyosporous Genera and Species of Pleosporales in North America * . - Margaret E. Barr NYBG The New York Botanical Garden Bronx, New York 10458, U.S.A. Issued: 26 December 1990 Memoirs of the New York Botanical Garden Volume 62 Copyright © 1990 The New York Botanical Garden Published by The New York Botanical Garden Bronx, New York 10458 International Standard Serial Number 0071-5794 Library of Congress Cataloging-in-Publication Data Barr, Margaret E. Some dictyosporous genera and species of Pleosporales in North America Margaret E. Barr. p. cm. — (Memoirs of the New York Botanical Garden ; v. 62) Includes bibliographical references and index. ISBN 0-89327-359-7 1. Pleosporales—North America—Classification. I. Title. II. Title: Dictyosporous genera and species of Pleosporales in North America. III. Series. QK1.N525 vol. 2 [QK623.P68] 581 s—dc20 [589.2'3] 90-13421 CIP Copyright © 1990 The New York Botanical Garden International Standard Book Number 0-89327-359-7 DECEMBER 1990 MEMOIRS OF THE NEW YORK BOTANICAL GARDEN 62: 1-92 Some Dictyosporous Genera and Species of Pleosporales in North America M argaret E. B arr1 Contents Abstract.............................................................................................................................................................. 2 Introduction....................................................................................................................................................... 2 Key to Families of Pleosporales with Dictyosporous Genera........................................................................ -
Characterising Plant Pathogen Communities and Their Environmental Drivers at a National Scale
Lincoln University Digital Thesis Copyright Statement The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). This thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: you will use the copy only for the purposes of research or private study you will recognise the author's right to be identified as the author of the thesis and due acknowledgement will be made to the author where appropriate you will obtain the author's permission before publishing any material from the thesis. Characterising plant pathogen communities and their environmental drivers at a national scale A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy at Lincoln University by Andreas Makiola Lincoln University, New Zealand 2019 General abstract Plant pathogens play a critical role for global food security, conservation of natural ecosystems and future resilience and sustainability of ecosystem services in general. Thus, it is crucial to understand the large-scale processes that shape plant pathogen communities. The recent drop in DNA sequencing costs offers, for the first time, the opportunity to study multiple plant pathogens simultaneously in their naturally occurring environment effectively at large scale. In this thesis, my aims were (1) to employ next-generation sequencing (NGS) based metabarcoding for the detection and identification of plant pathogens at the ecosystem scale in New Zealand, (2) to characterise plant pathogen communities, and (3) to determine the environmental drivers of these communities. First, I investigated the suitability of NGS for the detection, identification and quantification of plant pathogens using rust fungi as a model system. -
The Family Pleosporaceae: Intergeneric Relationships and Title Phylogenetic Perspectives Based on Sequence Analyses of Partial 28S Rdna
The family Pleosporaceae: intergeneric relationships and Title phylogenetic perspectives based on sequence analyses of partial 28S rDNA Kodsueb, R; Vijaykrishna, D; Aptroot, A; Lumyong, S; Mckenzie, Author(s) EHC; Hyde, KD; Jeewon, R Citation Mycologia, 2006, v. 98 n. 4, p. 571-583 Issued Date 2006 URL http://hdl.handle.net/10722/57253 Rights Creative Commons: Attribution 3.0 Hong Kong License Mycologia, 98(4), 2006, pp. 571–583. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 The family Pleosporaceae: intergeneric relationships and phylogenetic perspectives based on sequence analyses of partial 28S rDNA Rampai Kodsueb niothelia, which is probably polyphyletic. Anamorphic Department of Biology, Faculty of Science, Chiang Mai characters appear to be significant (especially in University, Chiang Mai, Thailand Cochliobolus) while ascospore morphologies, such as Vijaykrishna Dhanasekaran shape and color and substrate occurrence are poor Centre for Research in Fungal Diversity, Department of indicators of phylogenetic relationships among these Ecology & Biodiversity, The University of Hong Kong, loculoascomycetes. Pokfulam Road, Hong Kong Key words: anamorphs, ascospore morphology, Andre´ Aptroot Loculoascomycetes, phylogeny, Pleospora, polyphy- Centraalbureau voor Schimmelcultures, P.O. Box letic, ribosomal DNA 85167, 3508 AD Utrecht, The Netherlands Saisamorn Lumyong INTRODUCTION Department of Biology, Faculty of Science, Chiang Mai The largest family within the Pleosporales, Pleospor- University, Chiang Mai, Thailand aceae, comprises 17 genera and 111 species (Kirk et al Eric H.C. McKenzie 2001). Species are parasites or saprobes on wood and Landcare Research, Private Bag 92170, Auckland, dead herbaceous stems or leaves (Sivanesan 1984). New Zealand The classification in the Pleosporaceae has been Kevin D. -
The Genus Pleospora S. 1. from Svalbard
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Sydowia Jahr/Year: 1993 Band/Volume: 45 Autor(en)/Author(s): Holm Lennart, Holm K. Artikel/Article: The genus Pleospora s. l. from Svalbard. 167-187 ©Verlag Ferdinand Berger & Söhne Ges.m.b.H., Horn, Austria, download unter www.biologiezentrum.at The genus Pleospora s. 1. from Svalbard L. Holm & K. Holm Dept. of Systematic Botany, University of Uppsala, Villavägen 6, S-75236 Uppsala, Sweden Holm, L. & K. Holm (1993). The genus Pleospora s. 1. from Svalbard. - Sydowia 45(2): 167-187. A critical account is given of the thirteen species of Pleospora s. 1. recognized from Svalbard, viz. Cilioplea coronata, Montagnula spinosella, Pleospora androsa- ces, P. arctica, P. ascodedicata, P. comata, P. glacialis, P. helvetica, P. penicillus, P. spetsbergensis, P. wulffii, Pyrenophora raetica, and Pyr. subalpina. Pleospora arc- tica Karst, is reinstated for P. arctagrostidis Oud. It is not a synonym of P. islandica Johans., as generally believed. The latter species is not known from Svalbard, but a very close ally is P. wulffii Lind. Several species recorded from Svalbard by Lind have not been found in this study, and the records seem doubtful. An obvious trait of Svalbard Pleosporae is the tendency towards the reduction of the setae. These are considered to have a protective function against mycophagous arthropoda, and their reduction in Svalbard collections may be related to the paucity of these animals the- re. Keywords: Taxonomy, floristic study, Pleosporales, Ascomycetes. During the ISAM III Symposium on Svalbard, 11-20 August 1988, several ascomycetes were collected.