The Woody Planet: from Past Triumph to Manmade Decline
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Toward a Resolution of Campanulid Phylogeny, with Special Reference to the Placement of Dipsacales
TAXON 57 (1) • February 2008: 53–65 Winkworth & al. • Campanulid phylogeny MOLECULAR PHYLOGENETICS Toward a resolution of Campanulid phylogeny, with special reference to the placement of Dipsacales Richard C. Winkworth1,2, Johannes Lundberg3 & Michael J. Donoghue4 1 Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Caixa Postal 11461–CEP 05422-970, São Paulo, SP, Brazil. [email protected] (author for correspondence) 2 Current address: School of Biology, Chemistry, and Environmental Sciences, University of the South Pacific, Private Bag, Laucala Campus, Suva, Fiji 3 Department of Phanerogamic Botany, The Swedish Museum of Natural History, Box 50007, 104 05 Stockholm, Sweden 4 Department of Ecology & Evolutionary Biology and Peabody Museum of Natural History, Yale University, P.O. Box 208106, New Haven, Connecticut 06520-8106, U.S.A. Broad-scale phylogenetic analyses of the angiosperms and of the Asteridae have failed to confidently resolve relationships among the major lineages of the campanulid Asteridae (i.e., the euasterid II of APG II, 2003). To address this problem we assembled presently available sequences for a core set of 50 taxa, representing the diver- sity of the four largest lineages (Apiales, Aquifoliales, Asterales, Dipsacales) as well as the smaller “unplaced” groups (e.g., Bruniaceae, Paracryphiaceae, Columelliaceae). We constructed four data matrices for phylogenetic analysis: a chloroplast coding matrix (atpB, matK, ndhF, rbcL), a chloroplast non-coding matrix (rps16 intron, trnT-F region, trnV-atpE IGS), a combined chloroplast dataset (all seven chloroplast regions), and a combined genome matrix (seven chloroplast regions plus 18S and 26S rDNA). Bayesian analyses of these datasets using mixed substitution models produced often well-resolved and supported trees. -
Physiochemical and Antibacterial Characterization of Fruits of Three Chilean Trees
72 Fruits (2), 87–96 | ISSN 0248-1294 print, 1625-967X online | https://doi.org/10.17660/th.2017/72.2.4 | © ISHS 2017 Original article Citronella mucronata (Cardiopteridaceae), Pitavia punctata (Rutaceae)Physiochemical and Beilschmiediaand antibacterial berteroana characterization (Lauraceae), of fruits three of endemic and threatened Chilean trees , G.F. Narváez2, M.F. Morales3 3 4 and C.R. Figueroa 1 5,a F.A.12 Sáez , H.M. Bello , C. Balbontín 3 Master Program in Forest Sciences, Faculty of Forest Sciences, University of Concepción, Concepción, Chile 4 Faculty of Forest Sciences, University of Concepción, Concepción, Chile Research Lab of Antibacterial Agents, Faculty of Biological Sciences, University of Concepción, Concepción, Chile 5 Small Fruits and Berry Crops Research, Institute for Agricultural Research (INIA)-Quilamapu, Chillán, Chile Phytohormone Research Laboratory, Institute of Biological Sciences, University of Talca, Talca, Chile Summary Significance of this study Introduction – Several native tree species are What is already known on this subject? scarcely studied in relation to fruit properties. In or- • Citronella mucronata, Pitavia punctata and Beilschmie- der to bring about information of these plant resourc- dia berteroana are threatened endemic trees of central es, the characterization of ripening-associated prop- erties of the fruit of three endemic and threatened studied. Chilean trees (Citronella mucronata, Pitavia punctata Chile whose fruit properties have been scarcely and Beilschmiedia berteroana) was performed in the What are the new findings? present study. Materials and methods – The physio- • C. mucronata and P. punctata chemical characterization of two developmental fruit a high amount of pectin and bacteriostatic effect, stages in each species included the measurement of fruits extracts showed soluble solid content (SSC), titratable acidity (TA), pH, for both fruits. -
Towards an Understanding of the Evolution of Violaceae from an Anatomical and Morphological Perspective Saul Ernesto Hoyos University of Missouri-St
University of Missouri, St. Louis IRL @ UMSL Theses Graduate Works 8-7-2011 Towards an understanding of the evolution of Violaceae from an anatomical and morphological perspective Saul Ernesto Hoyos University of Missouri-St. Louis, [email protected] Follow this and additional works at: http://irl.umsl.edu/thesis Recommended Citation Hoyos, Saul Ernesto, "Towards an understanding of the evolution of Violaceae from an anatomical and morphological perspective" (2011). Theses. 50. http://irl.umsl.edu/thesis/50 This Thesis is brought to you for free and open access by the Graduate Works at IRL @ UMSL. It has been accepted for inclusion in Theses by an authorized administrator of IRL @ UMSL. For more information, please contact [email protected]. Saul E. Hoyos Gomez MSc. Ecology, Evolution and Systematics, University of Missouri-Saint Louis, 2011 Thesis Submitted to The Graduate School at the University of Missouri – St. Louis in partial fulfillment of the requirements for the degree Master of Science July 2011 Advisory Committee Peter Stevens, Ph.D. Chairperson Peter Jorgensen, Ph.D. Richard Keating, Ph.D. TOWARDS AN UNDERSTANDING OF THE BASAL EVOLUTION OF VIOLACEAE FROM AN ANATOMICAL AND MORPHOLOGICAL PERSPECTIVE Saul Hoyos Introduction The violet family, Violaceae, are predominantly tropical and contains 23 genera and upwards of 900 species (Feng 2005, Tukuoka 2008, Wahlert and Ballard 2010 in press). The family is monophyletic (Feng 2005, Tukuoka 2008, Wahlert & Ballard 2010 in press), even though phylogenetic relationships within Violaceae are still unclear (Feng 2005, Tukuoka 2008). The family embrace a great diversity of vegetative and floral morphologies. Members are herbs, lianas or trees, with flowers ranging from strongly spurred to unspurred. -
Antimicrobial and Antioxidant Activity of the Leaves, Bark and Stems of Liquidambar Styraciflua L
Int.J.Curr.Microbiol.App.Sci (2016) 5(1): 306-317 ISSN: 2319-7706 Volume 5 Number 1(2016) pp. 306-317 Journal homepage: http://www.ijcmas.com Original Research Article http://dx.doi.org/10.20546/ijcmas.2016.501.029 Antimicrobial and Antioxidant Activity of the Leaves, Bark and Stems of Liquidambar styraciflua L. (Altingiaceae) Graziele Francine Franco Mancarz1*, Ana Carolina Pareja Lobo1, Mariah Brandalise Baril1, Francisco de Assis Franco2 and Tomoe Nakashima1 1Pharmaceutical ScienceDepartment, Universidade Federal do Paraná, Curitiba, PR, Brazil 2Coodetec Desenvolvimento, Produção e Comercialização Agrícola Ltda, Cascavel, PR, Brazil *Corresponding author A B S T R A C T K e y w o r d s The genus Liquidambar L. is the best-known genus of the Altingiaceae Horan family, and species of this genus have long been used for the Liquidambar treatment of various diseases. Liquidambar styraciflua L., which is styraciflua, popularly known as sweet gum or alligator tree, is an aromatic deciduous antioxidant tree with leaves with 5-7 acute lobes and branched stems. In the present activity, study, we investigated the antimicrobial and antioxidant activity of aerial antimicrobial parts of L.styraciflua. Antimicrobial activity was evaluated using the activity, microdilution methodology. The DPPH and phosphomolybdenum methods microdilution method, were used to assess the antioxidant capacity of the samples. The extracts DPPH assay showed moderate or weak antimicrobial activity. The essential oil had the lowest MIC values and exhibited bactericidal action against Escherichia Article Info coli, Enterobacter aerogenes and Staphylococcus aureus. The ethyl acetate fraction and the butanol fraction from the bark and stem showed the best Accepted: antioxidant activity. -
Well-Known Plants in Each Angiosperm Order
Well-known plants in each angiosperm order This list is generally from least evolved (most ancient) to most evolved (most modern). (I’m not sure if this applies for Eudicots; I’m listing them in the same order as APG II.) The first few plants are mostly primitive pond and aquarium plants. Next is Illicium (anise tree) from Austrobaileyales, then the magnoliids (Canellales thru Piperales), then monocots (Acorales through Zingiberales), and finally eudicots (Buxales through Dipsacales). The plants before the eudicots in this list are considered basal angiosperms. This list focuses only on angiosperms and does not look at earlier plants such as mosses, ferns, and conifers. Basal angiosperms – mostly aquatic plants Unplaced in order, placed in Amborellaceae family • Amborella trichopoda – one of the most ancient flowering plants Unplaced in order, placed in Nymphaeaceae family • Water lily • Cabomba (fanwort) • Brasenia (watershield) Ceratophyllales • Hornwort Austrobaileyales • Illicium (anise tree, star anise) Basal angiosperms - magnoliids Canellales • Drimys (winter's bark) • Tasmanian pepper Laurales • Bay laurel • Cinnamon • Avocado • Sassafras • Camphor tree • Calycanthus (sweetshrub, spicebush) • Lindera (spicebush, Benjamin bush) Magnoliales • Custard-apple • Pawpaw • guanábana (soursop) • Sugar-apple or sweetsop • Cherimoya • Magnolia • Tuliptree • Michelia • Nutmeg • Clove Piperales • Black pepper • Kava • Lizard’s tail • Aristolochia (birthwort, pipevine, Dutchman's pipe) • Asarum (wild ginger) Basal angiosperms - monocots Acorales -
The Species of Alseuosmia (Alseuosmiaceae)
New Zealand Journal of Botany, 1978, Vol. 16: 271-7. 271 The species of Alseuosmia (Alseuosmiaceae) RHYS O. GARDNER Department of Botany, University of Auckland, Private Bag, Auckland, New Zealand (Received 15 September 1977) ABSTRACT A new species Alseuosmia turneri R. 0. Gardner (Alseuosmiaceae Airy Shaw) from the Volcanic Plateau, North Island, New Zealand is described and illustrated. A. linariifolia A. Cunn. is reduced to a variety of A. banksii A. Cunn. and A. quercifolia A. Cunn. is given hybrid status (=^4. banksii A. Cunn. x A. macrophylla A. Cunn.). A key to the four Alseuosmia species, synonymy, and a generalised distribution map are given. A. pusilla Col. is illustrated for the first time. INTRODUCTION judged to be frequent between only one pair of Allan Cunningham (1839) described eight species and the "excessive variability" lies mostly species of a new flowering plant genus Alseuosmia there. from material collected in the Bay of Islands region by Banks and Solander in 1769, by himself in 1826 and 1838, and by his brother Richard in 1833-4. The A NEW SPECIES OF ALSEUOSMIA species, all shrubs of the lowland forest, were sup- A. CUNN. posed to differ from one another chiefly in the shape and toothing of their leaves. An undescribed species of Alseuosmia from the Hooker (1852-5, 1864), with the benefit of Waimarino region of the Volcanic Plateau has been additional Colenso and Sinclair material, reduced known for some time (Cockayne 1928, p. 179; A. P. Cunningham's species to four, but stated that these Druce in Atkinson 1971). The following description four species were "excessively variable". -
Outline of Angiosperm Phylogeny
Outline of angiosperm phylogeny: orders, families, and representative genera with emphasis on Oregon native plants Priscilla Spears December 2013 The following listing gives an introduction to the phylogenetic classification of the flowering plants that has emerged in recent decades, and which is based on nucleic acid sequences as well as morphological and developmental data. This listing emphasizes temperate families of the Northern Hemisphere and is meant as an overview with examples of Oregon native plants. It includes many exotic genera that are grown in Oregon as ornamentals plus other plants of interest worldwide. The genera that are Oregon natives are printed in a blue font. Genera that are exotics are shown in black, however genera in blue may also contain non-native species. Names separated by a slash are alternatives or else the nomenclature is in flux. When several genera have the same common name, the names are separated by commas. The order of the family names is from the linear listing of families in the APG III report. For further information, see the references on the last page. Basal Angiosperms (ANITA grade) Amborellales Amborellaceae, sole family, the earliest branch of flowering plants, a shrub native to New Caledonia – Amborella Nymphaeales Hydatellaceae – aquatics from Australasia, previously classified as a grass Cabombaceae (water shield – Brasenia, fanwort – Cabomba) Nymphaeaceae (water lilies – Nymphaea; pond lilies – Nuphar) Austrobaileyales Schisandraceae (wild sarsaparilla, star vine – Schisandra; Japanese -
Alphabetical Lists of the Vascular Plant Families with Their Phylogenetic
Colligo 2 (1) : 3-10 BOTANIQUE Alphabetical lists of the vascular plant families with their phylogenetic classification numbers Listes alphabétiques des familles de plantes vasculaires avec leurs numéros de classement phylogénétique FRÉDÉRIC DANET* *Mairie de Lyon, Espaces verts, Jardin botanique, Herbier, 69205 Lyon cedex 01, France - [email protected] Citation : Danet F., 2019. Alphabetical lists of the vascular plant families with their phylogenetic classification numbers. Colligo, 2(1) : 3- 10. https://perma.cc/2WFD-A2A7 KEY-WORDS Angiosperms family arrangement Summary: This paper provides, for herbarium cura- Gymnosperms Classification tors, the alphabetical lists of the recognized families Pteridophytes APG system in pteridophytes, gymnosperms and angiosperms Ferns PPG system with their phylogenetic classification numbers. Lycophytes phylogeny Herbarium MOTS-CLÉS Angiospermes rangement des familles Résumé : Cet article produit, pour les conservateurs Gymnospermes Classification d’herbier, les listes alphabétiques des familles recon- Ptéridophytes système APG nues pour les ptéridophytes, les gymnospermes et Fougères système PPG les angiospermes avec leurs numéros de classement Lycophytes phylogénie phylogénétique. Herbier Introduction These alphabetical lists have been established for the systems of A.-L de Jussieu, A.-P. de Can- The organization of herbarium collections con- dolle, Bentham & Hooker, etc. that are still used sists in arranging the specimens logically to in the management of historical herbaria find and reclassify them easily in the appro- whose original classification is voluntarily pre- priate storage units. In the vascular plant col- served. lections, commonly used methods are systema- Recent classification systems based on molecu- tic classification, alphabetical classification, or lar phylogenies have developed, and herbaria combinations of both. -
Bio 308-Course Guide
COURSE GUIDE BIO 308 BIOGEOGRAPHY Course Team Dr. Kelechi L. Njoku (Course Developer/Writer) Professor A. Adebanjo (Programme Leader)- NOUN Abiodun E. Adams (Course Coordinator)-NOUN NATIONAL OPEN UNIVERSITY OF NIGERIA BIO 308 COURSE GUIDE National Open University of Nigeria Headquarters 14/16 Ahmadu Bello Way Victoria Island Lagos Abuja Office No. 5 Dar es Salaam Street Off Aminu Kano Crescent Wuse II, Abuja e-mail: [email protected] URL: www.nou.edu.ng Published by National Open University of Nigeria Printed 2013 ISBN: 978-058-434-X All Rights Reserved Printed by: ii BIO 308 COURSE GUIDE CONTENTS PAGE Introduction ……………………………………......................... iv What you will Learn from this Course …………………............ iv Course Aims ……………………………………………............ iv Course Objectives …………………………………………....... iv Working through this Course …………………………….......... v Course Materials ………………………………………….......... v Study Units ………………………………………………......... v Textbooks and References ………………………………........... vi Assessment ……………………………………………….......... vi End of Course Examination and Grading..................................... vi Course Marking Scheme................................................................ vii Presentation Schedule.................................................................... vii Tutor-Marked Assignment ……………………………….......... vii Tutors and Tutorials....................................................................... viii iii BIO 308 COURSE GUIDE INTRODUCTION BIO 308: Biogeography is a one-semester, 2 credit- hour course in Biology. It is a 300 level, second semester undergraduate course offered to students admitted in the School of Science and Technology, School of Education who are offering Biology or related programmes. The course guide tells you briefly what the course is all about, what course materials you will be using and how you can work your way through these materials. It gives you some guidance on your Tutor- Marked Assignments. There are Self-Assessment Exercises within the body of a unit and/or at the end of each unit. -
Tree of the Year: Liquidambar Eric Hsu and Susyn Andrews
Tree of the Year: Liquidambar Eric Hsu and Susyn Andrews With contributions from Anne Boscawen (UK), John Bulmer (UK), Koen Camelbeke (Belgium), John Gammon (UK), Hugh Glen (South Africa), Philippe de Spoelberch (Belgium), Dick van Hoey Smith (The Netherlands), Robert Vernon (UK) and Ulrich Würth (Germany). Affinities, generic distribution and fossil record Liquidambar L. has close taxonomic affinities with Altingia Noronha since these two genera share gum ducts associated with vascular bundles, terminal buds enclosed within numerous bud scales, spirally arranged stipulate leaves, poly- porate (with several pore-like apertures) pollen grains, condensed bisexual inflorescences, perfect or imperfect flowers, and winged seeds. Not surpris- ingly, Liquidambar, Altingia and Semiliquidambar H.T. Chang have now been placed in the Altingiaceae, as originally treated (Blume 1828, Wilson 1905, Chang 1964, Melikan 1973, Li et al. 1988, Zhou & Jiang 1990, Wang 1992, Qui et al. 1998, APG 1998, Judd et al. 1999, Shi et al. 2001 and V. Savolainen pers. comm.). These three genera were placed in the subfamily Altingioideae in Hamamelidaceae (Reinsch 1890, Chang 1979, Cronquist 1981, Bogle 1986, Endress 1989) or the Liquidambaroideae (Harms 1930). Shi et al. (2001) noted that Altingia species are evergreen with entire, unlobed leaves; Liquidambar is deciduous with 3-5 or 7-lobed leaves; while Semiliquidambar is evergreen or deciduous, with trilobed, simple or one-lobed leaves. Cytological studies have indicated that the chromosome number of Liquidambar is 2n = 30, 32 (Anderson & Sax 1935, Pizzolongo 1958, Santamour 1972, Goldblatt & Endress 1977). Ferguson (1989) stated that this chromosome number distinguished Liquidambar from the rest of the Hamamelidaceae with their chromosome numbers of 2n = 16, 24, 36, 48, 64 and 72. -
High Tree Endemism Recorded in Kanana Kanda Isolated Forest Fragment in Wet Zone of Sri Lanka
International Journal of Agriculture, Forestry and Plantation, Vol. 2 (February.) ISSN 2462-1757 2 01 6 HIGH TREE ENDEMISM RECORDED IN KANANA KANDA ISOLATED FOREST FRAGMENT IN WET ZONE OF SRI LANKA P.K.J. De Mel Department of Agricultural and Plantation Engineering Open University of Sri Lanka, P.O. Box 21, Nawala, Nugegoda (10250), Sri Lanka Email: [email protected] K.A.J.M. Kuruppuarachchi Department of Botany Open University of Sri Lanka, P.O. Box 21, Nawala, Nugegoda (10250), Sri Lanka Email: [email protected] ABSTRACT Kanana Kanda is an isolated lowland hill with an altitude of 115m covered by natural forest with an extent of 13ha. The forest fragment located in wet zone of Sri Lanka where much species diversity and endemism is found. The forest is disappearing fast due to anthropogenic influences. Therefore the present study was carried out with the objective of assessment of existing tree flora. Reconnaissance survey was first conducted in the forest in order to gather basic information on vegetation types and floristic characteristics. Four transects with a size of 100m x 5m each were laid for sampling trees. A woody plant with a dbh equal or greater than 5cm considered as a tree. A total number of 464 trees were enumerated in the forest. Field identification of species performed with the consultation of personnel who have sufficient knowledge, skills and experience on similar vegetation. Herbarium specimens were prepared from each tree unidentified in the field and later identified those comparing with the specimens preserved in the National Herbarium. Present study, recorded a total number of 50 different species belongs to 29 families. -
Evolutionary History of Floral Key Innovations in Angiosperms Elisabeth Reyes
Evolutionary history of floral key innovations in angiosperms Elisabeth Reyes To cite this version: Elisabeth Reyes. Evolutionary history of floral key innovations in angiosperms. Botanics. Université Paris Saclay (COmUE), 2016. English. NNT : 2016SACLS489. tel-01443353 HAL Id: tel-01443353 https://tel.archives-ouvertes.fr/tel-01443353 Submitted on 23 Jan 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NNT : 2016SACLS489 THESE DE DOCTORAT DE L’UNIVERSITE PARIS-SACLAY, préparée à l’Université Paris-Sud ÉCOLE DOCTORALE N° 567 Sciences du Végétal : du Gène à l’Ecosystème Spécialité de Doctorat : Biologie Par Mme Elisabeth Reyes Evolutionary history of floral key innovations in angiosperms Thèse présentée et soutenue à Orsay, le 13 décembre 2016 : Composition du Jury : M. Ronse de Craene, Louis Directeur de recherche aux Jardins Rapporteur Botaniques Royaux d’Édimbourg M. Forest, Félix Directeur de recherche aux Jardins Rapporteur Botaniques Royaux de Kew Mme. Damerval, Catherine Directrice de recherche au Moulon Président du jury M. Lowry, Porter Curateur en chef aux Jardins Examinateur Botaniques du Missouri M. Haevermans, Thomas Maître de conférences au MNHN Examinateur Mme. Nadot, Sophie Professeur à l’Université Paris-Sud Directeur de thèse M.