High Tree Endemism Recorded in Kanana Kanda Isolated Forest Fragment in Wet Zone of Sri Lanka
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Alphabetical Lists of the Vascular Plant Families with Their Phylogenetic
Colligo 2 (1) : 3-10 BOTANIQUE Alphabetical lists of the vascular plant families with their phylogenetic classification numbers Listes alphabétiques des familles de plantes vasculaires avec leurs numéros de classement phylogénétique FRÉDÉRIC DANET* *Mairie de Lyon, Espaces verts, Jardin botanique, Herbier, 69205 Lyon cedex 01, France - [email protected] Citation : Danet F., 2019. Alphabetical lists of the vascular plant families with their phylogenetic classification numbers. Colligo, 2(1) : 3- 10. https://perma.cc/2WFD-A2A7 KEY-WORDS Angiosperms family arrangement Summary: This paper provides, for herbarium cura- Gymnosperms Classification tors, the alphabetical lists of the recognized families Pteridophytes APG system in pteridophytes, gymnosperms and angiosperms Ferns PPG system with their phylogenetic classification numbers. Lycophytes phylogeny Herbarium MOTS-CLÉS Angiospermes rangement des familles Résumé : Cet article produit, pour les conservateurs Gymnospermes Classification d’herbier, les listes alphabétiques des familles recon- Ptéridophytes système APG nues pour les ptéridophytes, les gymnospermes et Fougères système PPG les angiospermes avec leurs numéros de classement Lycophytes phylogénie phylogénétique. Herbier Introduction These alphabetical lists have been established for the systems of A.-L de Jussieu, A.-P. de Can- The organization of herbarium collections con- dolle, Bentham & Hooker, etc. that are still used sists in arranging the specimens logically to in the management of historical herbaria find and reclassify them easily in the appro- whose original classification is voluntarily pre- priate storage units. In the vascular plant col- served. lections, commonly used methods are systema- Recent classification systems based on molecu- tic classification, alphabetical classification, or lar phylogenies have developed, and herbaria combinations of both. -
Evolutionary History of Floral Key Innovations in Angiosperms Elisabeth Reyes
Evolutionary history of floral key innovations in angiosperms Elisabeth Reyes To cite this version: Elisabeth Reyes. Evolutionary history of floral key innovations in angiosperms. Botanics. Université Paris Saclay (COmUE), 2016. English. NNT : 2016SACLS489. tel-01443353 HAL Id: tel-01443353 https://tel.archives-ouvertes.fr/tel-01443353 Submitted on 23 Jan 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NNT : 2016SACLS489 THESE DE DOCTORAT DE L’UNIVERSITE PARIS-SACLAY, préparée à l’Université Paris-Sud ÉCOLE DOCTORALE N° 567 Sciences du Végétal : du Gène à l’Ecosystème Spécialité de Doctorat : Biologie Par Mme Elisabeth Reyes Evolutionary history of floral key innovations in angiosperms Thèse présentée et soutenue à Orsay, le 13 décembre 2016 : Composition du Jury : M. Ronse de Craene, Louis Directeur de recherche aux Jardins Rapporteur Botaniques Royaux d’Édimbourg M. Forest, Félix Directeur de recherche aux Jardins Rapporteur Botaniques Royaux de Kew Mme. Damerval, Catherine Directrice de recherche au Moulon Président du jury M. Lowry, Porter Curateur en chef aux Jardins Examinateur Botaniques du Missouri M. Haevermans, Thomas Maître de conférences au MNHN Examinateur Mme. Nadot, Sophie Professeur à l’Université Paris-Sud Directeur de thèse M. -
Human Neutrophil Elastase Inhibitory Dihydrobenzoxanthones And
Ban et al. Appl Biol Chem (2020) 63:63 https://doi.org/10.1186/s13765-020-00549-3 ARTICLE Open Access Human neutrophil elastase inhibitory dihydrobenzoxanthones and alkylated favones from the Artocarpus elasticus root barks Yeong Jun Ban1†, Aizhamal Baiseitova1†, Mohd Azlan Nafah2, Jeong Yoon Kim1 and Ki Hun Park1* Abstract Neutrophil elastases are deposited in azurophilic granules interspace of neutrophils and tightly associated with infammatory ailments. The root barks of Artocarpus elasticus had a strong inhibitory potential against human neu- trophil elastase (HNE). The responsible components for HNE inhibition were confrmed as alkylated favones (2–4, IC50 14.8 ~ 18.1 μM) and dihydrobenzoxanthones (5–8, IC50 9.8 ~ 28.7 μM). Alkyl groups on favone were found to be crucial= functionalities for HNE inhibition. For instance, alkylated= favone 2 (IC 14.8 μM) was 20-fold potent than 50 = mother compound norartocarpetin (1, IC50 > 300 μM). The kinetic analysis showed that alkylated favones (2–4) were noncompetitive inhibition, while dihydrobenzoxanthones (5–8) were a mixed type I (KI < KIS) inhibitors, which usually binds with free enzyme better than to complex of enzyme–substrate. Inhibitors and HNE enzyme binding afnities were examined by fuorescence quenching efect. In the result, the binding afnity constants (KSV) had a signifcant correlation with inhibitory potencies (IC50). Keywords: Alkylated favones, Artocarpus elasticus, Dihydrobenzoxanthones, Fluorescence quenching, Human neutrophil elastase inhibition (HNE) Introduction defcient defence of the lower respiratory tract from Serine proteases are the largest and most important human neutrophil elastase (HNE), and further alveoli unit among the enzyme groups found in eukaryotes and damage [4]. -
Regional Expert Consultation on Underutilized Crops for Food and Nutritional Security in Asia and the Pacific
Regional Expert Consultation on Underutilized Crops for Food and Nutritional Security in Asia and the Pacific Bangkok, Thailand, November 13-15, 2017 Thematic, Strategic Papers and Country Status Reports Citation: R.K. Tyagi, A. Pandey, A. Agrawal, K.S. Varaprasad, R.S. Paroda, R.K. Khetarpal (2018) Regional Expert Consultation on Underutilized Crops for Food and Nutritional Security in Asia and the Pacific – Thematic, Strategic Papers and Country Status Reports. Asia-Pacific Association for Agricultural Research Institutions (APAARI), Bangkok, Thailand, November 13-15, 2017, x+349 p. Cover page photo identity: Front cover page: Amaranthus caudatus (chaulai) Back cover page: Carissa carandas (karonda) (Photo credit: Dr K.C. Bhatt, NBPGR, New Delhi, India) Editors: Rishi Kumar Tyagi, Anjula Pandey, Anuradha Agrawal, K.S. Varaprasad, Raj S. Paroda, Ravi K. Khetarpal Disclaimer: The information contained in this publication is provided on an “as is” basis with full responsibility or liability for any errors or omissions with the authors and not on the editors. Some contents of chapters have been sourced by the authors from their prior publications, and APAARI is not liable for any copyright infringement whatsoever. Published by: Asia-Pacific Association of Agricultural Research Institutions (APAARI) 2nd and 4th Floor, FAO Annex Building 202/1 Larn Luang Road Pomprab Sattrupai District, Bangkok 10100, Thailand ISBN: 978-616-7101-10-1 Copyright © APAARI For copies, please contact: The Executive Secretary Asia-Pacific Association of Agricultural Research Institutions (APAARI) 2nd and 4th Floor, FAO Annex Building 202/1 Larn Luang Road Pomprab Sattrupai District, Bangkok 10100, Thailand Phone: +662-2822918; Fax: +662-2822920 Email: [email protected]; Website: http://www.apaari.org Contents Foreword iii Acknowledgements v The Organizers vii Thematic Papers 1. -
First Steps Towards a Floral Structural Characterization of the Major Rosid Subclades
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2006 First steps towards a floral structural characterization of the major rosid subclades Endress, P K ; Matthews, M L Abstract: A survey of our own comparative studies on several larger clades of rosids and over 1400 original publications on rosid flowers shows that floral structural features support to various degrees the supraordinal relationships in rosids proposed by molecular phylogenetic studies. However, as many apparent relationships are not yet well resolved, the structural support also remains tentative. Some of the features that turned out to be of interest in the present study had not previously been considered in earlier supraordinal studies. The strongest floral structural support is for malvids (Brassicales, Malvales, Sapindales), which reflects the strong support of phylogenetic analyses. Somewhat less structurally supported are the COM (Celastrales, Oxalidales, Malpighiales) and the nitrogen-fixing (Cucurbitales, Fagales, Fabales, Rosales) clades of fabids, which are both also only weakly supported in phylogenetic analyses. The sister pairs, Cucurbitales plus Fagales, and Malvales plus Sapindales, are structurally only weakly supported, and for the entire fabids there is no clear support by the present floral structural data. However, an additional grouping, the COM clade plus malvids, shares some interesting features but does not appear as a clade in phylogenetic analyses. Thus it appears that the deepest split within eurosids- that between fabids and malvids - in molecular phylogenetic analyses (however weakly supported) is not matched by the present structural data. Features of ovules including thickness of integuments, thickness of nucellus, and degree of ovular curvature, appear to be especially interesting for higher level relationships and should be further explored. -
Obdiplostemony: the Occurrence of a Transitional Stage Linking Robust Flower Configurations
Annals of Botany 117: 709–724, 2016 doi:10.1093/aob/mcw017, available online at www.aob.oxfordjournals.org VIEWPOINT: PART OF A SPECIAL ISSUE ON DEVELOPMENTAL ROBUSTNESS AND SPECIES DIVERSITY Obdiplostemony: the occurrence of a transitional stage linking robust flower configurations Louis Ronse De Craene1* and Kester Bull-Herenu~ 2,3,4 1Royal Botanic Garden Edinburgh, Edinburgh, UK, 2Departamento de Ecologıa, Pontificia Universidad Catolica de Chile, 3 4 Santiago, Chile, Escuela de Pedagogıa en Biologıa y Ciencias, Universidad Central de Chile and Fundacion Flores, Ministro Downloaded from https://academic.oup.com/aob/article/117/5/709/1742492 by guest on 24 December 2020 Carvajal 30, Santiago, Chile * For correspondence. E-mail [email protected] Received: 17 July 2015 Returned for revision: 1 September 2015 Accepted: 23 December 2015 Published electronically: 24 March 2016 Background and Aims Obdiplostemony has long been a controversial condition as it diverges from diploste- mony found among most core eudicot orders by the more external insertion of the alternisepalous stamens. In this paper we review the definition and occurrence of obdiplostemony, and analyse how the condition has impacted on floral diversification and species evolution. Key Results Obdiplostemony represents an amalgamation of at least five different floral developmental pathways, all of them leading to the external positioning of the alternisepalous stamen whorl within a two-whorled androe- cium. In secondary obdiplostemony the antesepalous stamens arise before the alternisepalous stamens. The position of alternisepalous stamens at maturity is more external due to subtle shifts of stamens linked to a weakening of the alternisepalous sector including stamen and petal (type I), alternisepalous stamens arising de facto externally of antesepalous stamens (type II) or alternisepalous stamens shifting outside due to the sterilization of antesepalous sta- mens (type III: Sapotaceae). -
Phylogenetic Relationships in the Order Cucurbitales and a New Classification of the Gourd Family (Cucurbitaceae)
Schaefer & Renner • Phylogenetic relationships in Cucurbitales TAXON 60 (1) • February 2011: 122–138 TAXONOMY Phylogenetic relationships in the order Cucurbitales and a new classification of the gourd family (Cucurbitaceae) Hanno Schaefer1 & Susanne S. Renner2 1 Harvard University, Department of Organismic and Evolutionary Biology, 22 Divinity Avenue, Cambridge, Massachusetts 02138, U.S.A. 2 University of Munich (LMU), Systematic Botany and Mycology, Menzinger Str. 67, 80638 Munich, Germany Author for correspondence: Hanno Schaefer, [email protected] Abstract We analysed phylogenetic relationships in the order Cucurbitales using 14 DNA regions from the three plant genomes: the mitochondrial nad1 b/c intron and matR gene, the nuclear ribosomal 18S, ITS1-5.8S-ITS2, and 28S genes, and the plastid rbcL, matK, ndhF, atpB, trnL, trnL-trnF, rpl20-rps12, trnS-trnG and trnH-psbA genes, spacers, and introns. The dataset includes 664 ingroup species, representating all but two genera and over 25% of the ca. 2600 species in the order. Maximum likelihood analyses yielded mostly congruent topologies for the datasets from the three genomes. Relationships among the eight families of Cucurbitales were: (Apodanthaceae, Anisophylleaceae, (Cucurbitaceae, ((Coriariaceae, Corynocarpaceae), (Tetramelaceae, (Datiscaceae, Begoniaceae))))). Based on these molecular data and morphological data from the literature, we recircumscribe tribes and genera within Cucurbitaceae and present a more natural classification for this family. Our new system comprises 95 genera in 15 tribes, five of them new: Actinostemmateae, Indofevilleeae, Thladiantheae, Momordiceae, and Siraitieae. Formal naming requires 44 new combinations and two new names in Cucurbitaceae. Keywords Cucurbitoideae; Fevilleoideae; nomenclature; nuclear ribosomal ITS; systematics; tribal classification Supplementary Material Figures S1–S5 are available in the free Electronic Supplement to the online version of this article (http://www.ingentaconnect.com/content/iapt/tax). -
106 Conservation Importance of Flora in the Kurulu Kele Sanctuary, Sri
Bio Diversity Conservation and Management 106 Conservation Importance of Flora in the Kurulu Kele Sanctuary, Sri Lanka Pemarathne S.K.S. 1* and Gunaratne A.M.T.A. 2 1Postgraduate institute of Science, University of Peradeniya, Peradeniya, Sri Lanka 2Department of Botany, Faculty of Science, University of Peradeniya, Peradeniya, Sri Lanka *[email protected] Abstract Of the 3,771 flowering plant species in Sri Lanka 926 are endemic to the country. Nearly 90% of the endemic flora are concentrated in the wet zone of the island. Kurulu Kele, which is located in the lowland wet zone, was declared as a sanctuary in 1941 due to its high bird and plant diversity Due to its location in the centre of a city, this sanctuary faces lot of human pressures. Two types of habitats identified at the Kurulu Kele Sanctuary (KKS), include the dense forest area and the rocky area. The vegetation sampling was carried out in twelve randomly selected 10 m x 10 m plots (6 quadrats in each habitat) from December 2011 to June 2012, in order to investigate the floristic composition of the KKS. A total of 75 species of higher plants belonging to 33 families were recorded. Of the 75 plant species 55% were trees, 20% were tree lets and 25% were shrubs. Twenty five percent of the plant species were endemic, 63% were native and 12% were exotic. Four percent were threatened and 9% were globally threatened. The plant density was 6,867 and 4,617 individuals per ha in the dense forest area and in the rocky area, respectively. -
Natural Leaf Packs and Invertebrates in a Tropical Stream: Is There a Functional Relationship?
Sri Lanka J. Aquat. Sci. 24(2) (2019): 65-76 http://doi.org/10.4038/sljas.v24i2.7568 Natural leaf packs and invertebrates in a tropical stream: Is there a functional relationship? Hiranthi Walpola1, Maria Leichtfried2 and Leopold Füreder1 1River Ecology and Conservation, Institute of Ecology, University of Innsbruck, Technikerstr. 25, A-6020 Innsbruck, Austria 2Institute for Limnology of the Austrian Academy of Sciences, Mondseestr. 9, A-5310 Mondsee, Austria *Correspondence ([email protected]) https://orcid.org/0000-0002-5793-7270 Abstract Naturally occurring leaf packs in five sites along the elevation gradient in Eswathu Oya stream in Sri Lanka were sampled and analysed for species composition of leaves and benthic macroinvertebrates. Eswathu Oya is a perennial, low order, mountain stream in the wet climatic zone of Sri Lanka. Leaves of only five species of plants were found in all sites – Hevea brasiliensis, Ochlandra stridula, Alstonia macrophylla, Terminalia arjuna and Melia azedarach. In each sampling site Hevea brasiliensis and Ochlandra stridula leaves were found in higher abundance. The contribution of other leaves varied with the site. Diptera larvae of the family Chironomidae, were the dominant group of leaf colonizing animals. The relative abundance of Chironomidae decreased along the elevation gradient in the down-stream. Gathering Collectors (GC) were the dominant functional feeding group (FFG) found in all leaf packs, but their abundance decreased along the downstream elevation gradient. Shredders were not present, as reported from some other tropical streams. Predators and Scrapers were increased along the downstream gradient. Filtering Collectors and Pierce-Herbivores did not show a clear pattern. -
Sri Lanka Wildlife Tour Report 2013 Birdwatching Butterfly Mammal
Sri Lanka The Enchanted Isle A Greentours Trip Report 18th February to 8th March 2013 Led by Paul Cardy Trip Report and Systematic Lists written by Paul Cardy Day 0/1 Monday February 18th, Tuesday February 19th Journey to Sri Lanka, and to Kandy Both flights arrived on schedule, and Mr Silva was at the airport early in the morning to meet first the group arriving from London, and shortly afterwards me coming from Italy via Abu Dhabi. Once aboard the spacious bus we drove through reasonably quiet streets in the dark although there was already quite a bit of traffic on the road. Once light, very common birds began with House and Jungle Crows; a selection of egrets; Red-vented Bulbul; White-throated Kingfisher; and Rose-ringed Parakeets. We also drove past a very large Flying Fox roost. After about two and a half hours we reached a bustling Kandy, and our hotel, The Suisse. Around the lake were Indian Cormorants, Spot-billed Pelican, Little and Great Egrets, and Black-crowned Night Herons. The staff at the hotel gave a warm welcome and it was impressive that they let us check in so early in the day, although there was a slight wait for some of the rooms. While we waited an excellent buffet breakfast was enjoyed. A Common Evening Brown perched on the walls of the hotel. Then it was time for sleep, and most of us managed a few hours, with lunch optional, and delicious for those who attended. We met up at 3.30 for an afternoon excursion. -
Diversity of the Tree Flora in Semenggoh Arboretum, Sarawak, Borneo
Gardens’ Bulletin Singapore 64(1): 139–169. 2012 139 Diversity of the tree flora in Semenggoh Arboretum, Sarawak, Borneo C.Y. Ling1 and S. Julia2 Botanical Research Centre, Sarawak Forestry Corporation, Km 20, Jalan Puncak Borneo, 93250 Kuching, Sarawak [email protected] (corresponding author) [email protected] ABSTRACT. A 4-ha sample plot was established at the Arboretum, Semenggoh Forest Reserve to document tree species in this lowland mixed dipterocarp forest. The area assessed contains 2837 trees with diameter at breast height ≥ 10 cm belonging to 60 families, 160 genera and 541 species. Euphorbiaceae and Malvaceae (10 genera each) were the most diverse families at genus level and Dipterocarpaceae (61 species) is most diverse at species level. More than 25% of trees (720 individuals) were dipterocarps and contributed the highest basal area (cross-sectional area over-bark at breast height measured in m2) of 16.7 m2/ha. The most abundant species are Shorea multiflora (21 trees/ha) and Pouteria malaccensis (31 trees/ha) for dipterocarp and non-dipterocarp species, respectively. Semenggoh Arboretum has a rich and diverse flora and, being a natural primary forest in the middle of an increasingly developed area, Semenggoh is important as a genetic reservoir for threatened species (particularly the dipterocarps) and as an in-situ conservation site for Sarawak’s lowland mixed dipterocarp forest. Keywords. Borneo, Dipterocarpaceae, Sarawak, Semenggoh Arboretum, tree diversity Introduction Floristic composition studies or floristic analyses are a useful tool to understand the spatial pattern of plant composition and diversity. When combined with ecological, environmental, geological and historical variables, important information on mechanisms maintaining high levels of tree species diversity in tropical forest can be obtained (Slik et al. -
Rigidoporus Microporus During Saprotrophic Growth on Rubber Wood Abbot O
Oghenekaro et al. BMC Genomics (2016) 17:234 DOI 10.1186/s12864-016-2574-9 RESEARCH ARTICLE Open Access De novo transcriptomic assembly and profiling of Rigidoporus microporus during saprotrophic growth on rubber wood Abbot O. Oghenekaro*, Tommaso Raffaello, Andriy Kovalchuk and Fred O. Asiegbu Abstract Background: The basidiomycete Rigidoporus microporus isafungusthatcausesthewhiterotdiseaseofthe tropical rubber tree, Hevea brasiliensis, the major source of commercial natural rubber. Besides its lifestyle as a pathogen,thefungusisknowntoswitchtosaprotrophicgrowthonwoodwiththeabilitytodegradeboth lignin and cellulose. There is almost no genomic or transcriptomic information on the saprotrophic abilities of this fungus. In this study, we present the fungal transcriptomic profiles during saprotrophic growth on rubber wood. Results: A total of 266.6 million RNA-Seq reads were generated from six libraries of the fungus growing either onrubberwoodorwithoutwood.De novo assembly produced 34, 518 unigenes with an average length of 2179 bp. Annotation of unigenes using public databases; GenBank, Swiss-Prot, Kyoto Encyclopedia of Genes and Genomes (KEGG), Cluster of Orthologous Groups (COG) and Gene Ontology (GO) produced 25, 880 annotated unigenes. Transcriptomic profiling analysis revealed that the fungus expressed over 300 genes encoding lignocellulolytic enzymes. Among these, 175 genes were up-regulated in rubber wood. These include three members of the glycoside hydrolase family 43, as well as various glycosyl transferases, carbohydrate esterases and polysaccharide lyases. A large number of oxidoreductases which includes nine manganese peroxidases were also significantly up-regulated in rubber wood. Several genes involved in fatty acid metabolism and degradation as well as natural rubber degradation were expressed in the transcriptome. Four genes (acyl-CoA synthetase, enoyl-CoA hydratase, 3-hydroxyacyl-CoA dehydrogenase and acyl-CoA acetyltransferase) potentially involved in rubber latex degradation pathway were also induced.