An Action Plan for Darwin's Frogs Brings Key Stakeholders Together
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Evaluating Methods for Phylogenomic Analyses, and a New Phylogeny for a Major Frog Clade
Molecular Phylogenetics and Evolution 119 (2018) 128–143 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Evaluating methods for phylogenomic analyses, and a new phylogeny for a MARK major frog clade (Hyloidea) based on 2214 loci ⁎ Jeffrey W. Streichera,b, , Elizabeth C. Millera, Pablo C. Guerreroc,d, Claudio Corread, Juan C. Ortizd, Andrew J. Crawforde, Marcio R. Pief, John J. Wiensa a Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA b Department of Life Sciences, The Natural History Museum, London SW7 5BD, UK c Institute of Ecology and Biodiversity, Faculty of Sciences, University of Chile, 780-0024 Santiago, Chile d Facultad de Ciencias Naturales & Oceanográficas, Universidad de Concepción, Concepción, Chile e Department of Biological Sciences, Universidad de los Andes, A.A. 4976 Bogotá, Colombia f Departamento de Zoologia, Universidade Federal do Paraná, Curitiba, Paraná, Brazil ARTICLE INFO ABSTRACT Keywords: Phylogenomic approaches offer a wealth of data, but a bewildering diversity of methodological choices. These Amphibia choices can strongly affect the resulting topologies. Here, we explore two controversial approaches (binning Anura genes into “supergenes” and inclusion of only rapidly evolving sites), using new data from hyloid frogs. Hyloid Biogeography frogs encompass ∼53% of frog species, including true toads (Bufonidae), glassfrogs (Centrolenidae), poison Naive binning frogs (Dendrobatidae), and treefrogs (Hylidae). Many hyloid families are well-established, but relationships Phylogenomics among these families have remained difficult to resolve. We generated a dataset of ultraconserved elements Statistical binning (UCEs) for 50 ingroup species, including 18 of 19 hyloid families and up to 2214 loci spanning > 800,000 aligned base pairs. -
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Vol. 45: 331–335, 2021 ENDANGERED SPECIES RESEARCH Published May 27 https://doi.org/10.3354/esr01138 Endang Species Res OPEN ACCESS NOTE First case of male alloparental care in amphibians: tadpole stealing in Darwin’s frogs Osvaldo Cabeza-Alfaro1, Andrés Valenzuela-Sánchez2,3,4, Mario Alvarado-Rybak2,5, José M. Serrano3,6, Claudio Azat2,* 1Zoológico Nacional, Pio Nono 450, Recoleta, Santiago 8420541, Chile 2Sustainability Research Centre & PhD Programme in Conservation Medicine, Faculty of Life Sciences, Universidad Andres Bello, Republica 440, Santiago 8370251, Chile 3ONG Ranita de Darwin, Ruta T-340 s/n, Valdivia 5090000, Chile 4Instituto de Conservación, Biodiversidad y Territorio, Facultad de Ciencias Forestales y Recursos Naturales, Universidad Austral de Chile, Casilla 567, Valdivia 5110027, Chile 5Núcleo de Ciencias Aplicadas en Ciencias Veterinarias y Agronómicas, Universidad de las Américas, Echaurren 140, Santiago 8370065, Chile 6Museo de Zoología ‘Alfonso L. Herrera’, Departamento Biología Evolutiva, Facultad de Ciencias, Universidad Nacional Autónoma de México, Circuito Exterior s/n, Ciudad Universitaria, Coyoacán, Mexico City 04510, Mexico ABSTRACT: Alloparental care, i.e. care directed at non-descendant offspring, has rarely been described in amphibians. Rhinoderma darwinii is an Endangered and endemic frog of the tem - perate forests of Chile and Argentina. This species has evolved a unique reproductive strategy whereby males brood their tadpoles within their vocal sacs (known as neomelia). Since 2009, the National Zoo of Chile has developed an ex situ conservation programme for R. darwinii, in which during reproduction, adults are kept in terraria in groups of 2 females with 2 males. In September 2018, one pair engaged in amplexus, with one of the males fertilizing the eggs. -
Systematic Review of the Frog Family Hylidae, with Special Reference to Hylinae: Phylogenetic Analysis and Taxonomic Revision
SYSTEMATIC REVIEW OF THE FROG FAMILY HYLIDAE, WITH SPECIAL REFERENCE TO HYLINAE: PHYLOGENETIC ANALYSIS AND TAXONOMIC REVISION JULIAÂ N FAIVOVICH Division of Vertebrate Zoology (Herpetology), American Museum of Natural History Department of Ecology, Evolution, and Environmental Biology (E3B) Columbia University, New York, NY ([email protected]) CEÂ LIO F.B. HADDAD Departamento de Zoologia, Instituto de BiocieÃncias, Unversidade Estadual Paulista, C.P. 199 13506-900 Rio Claro, SaÄo Paulo, Brazil ([email protected]) PAULO C.A. GARCIA Universidade de Mogi das Cruzes, AÂ rea de CieÃncias da SauÂde Curso de Biologia, Rua CaÃndido Xavier de Almeida e Souza 200 08780-911 Mogi das Cruzes, SaÄo Paulo, Brazil and Museu de Zoologia, Universidade de SaÄo Paulo, SaÄo Paulo, Brazil ([email protected]) DARREL R. FROST Division of Vertebrate Zoology (Herpetology), American Museum of Natural History ([email protected]) JONATHAN A. CAMPBELL Department of Biology, The University of Texas at Arlington Arlington, Texas 76019 ([email protected]) WARD C. WHEELER Division of Invertebrate Zoology, American Museum of Natural History ([email protected]) BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY CENTRAL PARK WEST AT 79TH STREET, NEW YORK, NY 10024 Number 294, 240 pp., 16 ®gures, 2 tables, 5 appendices Issued June 24, 2005 Copyright q American Museum of Natural History 2005 ISSN 0003-0090 CONTENTS Abstract ....................................................................... 6 Resumo ....................................................................... -
1704632114.Full.Pdf
Phylogenomics reveals rapid, simultaneous PNAS PLUS diversification of three major clades of Gondwanan frogs at the Cretaceous–Paleogene boundary Yan-Jie Fenga, David C. Blackburnb, Dan Lianga, David M. Hillisc, David B. Waked,1, David C. Cannatellac,1, and Peng Zhanga,1 aState Key Laboratory of Biocontrol, College of Ecology and Evolution, School of Life Sciences, Sun Yat-Sen University, Guangzhou 510006, China; bDepartment of Natural History, Florida Museum of Natural History, University of Florida, Gainesville, FL 32611; cDepartment of Integrative Biology and Biodiversity Collections, University of Texas, Austin, TX 78712; and dMuseum of Vertebrate Zoology and Department of Integrative Biology, University of California, Berkeley, CA 94720 Contributed by David B. Wake, June 2, 2017 (sent for review March 22, 2017; reviewed by S. Blair Hedges and Jonathan B. Losos) Frogs (Anura) are one of the most diverse groups of vertebrates The poor resolution for many nodes in anuran phylogeny is and comprise nearly 90% of living amphibian species. Their world- likely a result of the small number of molecular markers tra- wide distribution and diverse biology make them well-suited for ditionally used for these analyses. Previous large-scale studies assessing fundamental questions in evolution, ecology, and conser- used 6 genes (∼4,700 nt) (4), 5 genes (∼3,800 nt) (5), 12 genes vation. However, despite their scientific importance, the evolutionary (6) with ∼12,000 nt of GenBank data (but with ∼80% missing history and tempo of frog diversification remain poorly understood. data), and whole mitochondrial genomes (∼11,000 nt) (7). In By using a molecular dataset of unprecedented size, including 88-kb the larger datasets (e.g., ref. -
Diversity of Diversity of Anura
Diversity of Anura WFS 433/533 1/24/2013 Lecture goal To familiarize students with the different families of the order anura. To familiarize students with aspects of natural history and world distribution of anurans Required readings: Wells: pp. 15-41 http://amphibiaweb.org/aw/index.html Lecture roadmap Characteristics of Anurans Anuran Diversity Anuran families, natural history and world distribution 1 What are amphibians? These foul and loathsome animals are abhorrent because of their cold body, pale color, cartilaginous skeleton, filthy skin, fierce aspect, calculating eye, offensive smell, harsh voice, squalid habitation, and terrible venom; and so their Creator has not exerted his powers to make many of them. Carl von Linne (Linnaeus) Systema Naturae (1758) What are frogs? A thousand splendid suns, a million moons, a billion twinkle stars are nothing compared to the eyes of a frog in the swamp —Miss Piggy about Kermit, in Larry king live, 1993 Diversity of anurans Global Distribution 30 Families 4963 spec ies Groups: •Archaeobatrachia (4 families) •Mesobatrachia (5 families) 30 Families •Neobatrachia (all other families) 2 No. of Known Species in Number of Species Number of Species in Family World in the United States? Tennessee? Allophrynidae 10 0 Arthroleptidae 78 0 0 Ascaphidae 22 0 Bombinatoridae 11 0 0 Brachycephalidae 60 0 Bufonidae 457 23 2 Centrolenidae 139 0 0 Dendrobatidae 219 1* 0 Discoglossidae 11 0 0 Heleophrynidae 60 0 Hemisotidae 90 0 Hylidae 851 29* 10 Hyperoliidae 253 0 0 Leiopelmatidae 40 0 30 families Leptodactylidae -
Memorias Del Taller De Conservación De Anfibios Para Organismos Públicos
CONSERVACIÓN DE ANFIBIOS DE CHILE MEMORIAS DEL TALLER DE CONSERVACIÓN DE ANFIBIOS PARA ORGANISMOS PÚBLICOS CLAUDIO SOTO-AZAT & ANDRÉS VALENZUELA-SÁNCHEZ (EDITORES) x EDITORES CLAUDIO SOTO-AZAT ANDRÉS VALENZUELA-SÁNCHEZ DISEÑO Y DIAGRAMACIÓN ANDRÉS VALENZUELA-SÁNCHEZ FOTOGRAFÍAS: ANDRÉS VALENZUELA-SÁNCHEZ Y CLAUDIO SOTO-AZAT. COLABORACIÓN FOTOGRAFÍAS: JAMES REARDON (PÁGINA 9) Y MICHEL SALLABERRY (PÁGINA 18). FOTOGRAFÍA PORTADA Y CONTRAPORTADA: ALSODES BARRIOI (JAMES REARDON) Y RHINODERMA DARWINII (ANDRÉS VALENZUELA-SÁNCHEZ). COMO CITAR ESTE LIBRO : SOTO-AZAT C & A VALENZUELA-SÁNCHEZ (2012) CONSERVACIÓN DE ANFIBIOS DE CHILE. UNIVERSIDAD NACIONAL ANDRÉS BELLO, SANTIAGO, CHILE. CONTACTO: [email protected] - [email protected] I.S.B.N : 978-956-7247-70-7 NO REGISTRO PROPIEDAD INTELECTUAL : 221.781 PRIMERA EDICIÓN 500 EJEMPLARES IMPRESOR: QUAD/GRAPHICS CHILE S.A., CHILE. x Este libro es el resumen de las conferencias del “Taller de Conservación de Anfibios para Organismos Públicos” realizado los días 7 y 8 de Julio de 2011 en la Universidad Andrés Bello, Santiago de Chile.. Organiza: Facultad de Ecología y Recursos Naturales Dirección de Extensión Académica Patrocina: conaf.gob.cl Rana jaspeada (Batrachyla antartandica) Índice Página Índice 1 Autores 4 Prólogo 8 Antecedentes sobre la importancia de los anfibios chilenos 10 JÜRGEN ROTTMANN Conservación de anfibios y programa EDGE 13 CLAUDIO SOTO-AZAT & ANDRÉS VALENZUELA-SÁNCHEZ Clasificación de anfibios chilenos según estado de conservación 19 CHARIF TALA G. Genética de la conservación y estudios no invasivos en anfibios de Chile 28 MARCO A. MÉNDEZ, CLAUDIO CORREA & CAROLINA GALLARDO Hot-spot de biodiversidad y riegos de extinción de anfibios en Chile 36 MARCELA A. VIDAL & HELEN DÍAZ-PÁEZ Cambio climático: efecto sobre los anfibios 42 ANDRÉS VALENZUELA-SÁNCHEZ Estatus de la invasión del sapo africano Xenopus laevis en Chile 49 GABRIEL A. -
Potential Effects of Climate Change on the Distribution of the Endangered Darwin’S Frog
NORTH-WESTERN JOURNAL OF ZOOLOGY 14 (2): 165-170 ©NWJZ, Oradea, Romania, 2018 Article No.: e171508 http://biozoojournals.ro/nwjz/index.html Potential effects of climate change on the distribution of the endangered Darwin’s frog Johara BOURKE1,2,*, Klaus BUSSE1 and Wolfgang BÖHME1 1. Zoologisches Forschungsmuseum Alexander Koenig (ZFMK), Adenaueralle 160, D-53113 Bonn, Germany. 2. Tierärztliche Hochschule Hannover, Bünteweg 17, 30559 Hannover, Germany. *Corresponding author, J. Bourke (2nd address), E-mail: [email protected] Received: 24. June 2016 / Accepted: 26. July 2017 / Available online: 29. July 2017 / Printed: December 2018 Abstract. Herein, we gathered 109 historic and current records of the endangered Darwin’s frog (Rhinoderma darwinii) to be able to model its potential current and future distribution by means of expert opinion and species distribution model (Maxent). Results showed that R. darwinii potential current distribution is much wider than the known one, mainly due to anthropogenically modified areas which were concentrated in the Chilean central valley. We identified a major threat to Darwin’s frog existence, namely isolation of the population between the Coastal and Andean mountain ranges. On the other hand, SDM projections onto future climate scenarios suggest that in 2080, the frog’s climatically suitable areas will expand and slightly shift southward. However, due to current ongoing threats, such as habitat destruction, we encourage further monitoring and surveying of Darwin’s frog populations and increased protection of their habitat, especially at the central valley. Key words: Global warming, land use change, anthropogenic habitat destruction, distribution range shift, Rhinoderma. Introduction province in Chile (Rabanal & Nuñez 2009) and in Neuquén and Río Negro provinces in Argentina (Úbeda et al. -
Disappearing Jewels
Disappearing Jewels The Status of New World Amphibians I N C O L L A B O R A T I O N W I T H NatureServe is a non-profit organization dedicated to providing the scientific knowledge that forms the basis for effective conservation action. Citation: Young, B. E., S. N. Stuart, J. S. Chanson, N. A. Cox, and T. M. Boucher. 2004. Disappearing Jewels: The Status of New World Amphibians. NatureServe, Arlington, Virginia. © NatureServe 2004 ISBN 0-9711053-1-6 Primary funding for the publication of this report was provided by BP. NatureServe 1101 Wilson Boulevard, 15th Floor Arlington, VA 22209 703-908-1800 www.natureserve.org Disappearing Jewels The Status of New World Amphibians by Bruce E. Young Simon N. Stuart Janice S. Chanson Neil A. Cox Timothy M. Boucher Bruce E. Young NatureServe Apdo. 75-5655 Monteverde, Puntarenas Costa Rica 011-506-645-6231 Simon N. Stuart, Janice S. Chanson, and Neil A. Cox This page: Hyalinobatrachium valerioi (a glass frog). Least Concern. IUCN/SSC Biodiversity Assessment Initiative Costa Rica, Panama, Ecuador, and Colombia. / Photo by Piotr Naskrecki. Center for Applied Biodiversity Science Front Cover Conservation International Top: Agalychnis calcarifer (a leaf frog). Least Concern. Honduras, Nicaragua, 1919 M Street N.W., Suite 600 Costa Rica, Panama, Colombia, and Ecuador. / Photo by Piotr Naskrecki. Washington, DC 20036 USA Top right: Atelopus zeteki (a harlequin frog). Critically Endangered. Panama. / 202-912-1000 Photo by Forrest Brem. Timothy M. Boucher Bottom left: Northern two-lined salamander (Eurycea bislineata). Least The Nature Conservancy Concern. Canada and United States. -
Extinction Risk and Population Declines in Amphibians
Extinction Risk and Population Declines in Amphibians Jon Bielby Imperial College London, Division of Biology, A thesis submitted for the degree of Doctor of Philosophy at Imperial College London – May 2008 1 Thesis abstract This thesis is about understanding the processes that explain the patterns of extinction risk and declines that we see in amphibians, how we can use that understanding to set conservation priorities, and how we can convert those priorities into practical, hands-on research and management. In particular, I focus on the threat posed by the emerging infectious disease, chytridiomycosis, which is caused by the chytrid fungus, Batrachochytrium dendrobatidis ( Bd ). Amphibians display a non-random pattern of extinction risk, both taxonomically and geographically. In chapter two I investigate the mechanism behind the observed taxonomic selectivity and find that it is due to species biology rather than heterogeneity in either threat intensity or conservation knowledge. In chapter three I determine which biological and environmental traits are important in rendering a species susceptible to declines, focussing on susceptibility to Bd . I found that restricted range, high elevation species with an aquatic life-stage are more likely to have suffered a decline. Using these traits, I predict species and locations that may be susceptible in the future, and which should therefore be a high priority for amphibian research and conservation. 2 The use of predictive models to set conservation priorities relies on the accuracy of the modelling technique used. In chapter four I compare the predictive performance of both phylogenetic and nonphylogenetic regression and decision trees, and assess the suitability of each technique. -
Volume 2, Chapter 14-5: Anurans: Central and South American Mossy Habitats
Glime, J. M. and Boelema, W. J. 2017. Anurans: Central and South American Mossy Habitats. Chapt. 14-5. In: Glime, J. M. 14-5-1 Bryophyte Ecology. Volume 2. Bryological Interaction. Ebook sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 19 July 2020 and available at <http://digitalcommons.mtu.edu/bryophyte-ecology2/>. CHAPTER 14-5 ANURANS: CENTRAL AND SOUTH AMERICAN MOSSY HABITATS Janice M. Glime and William J. Boelema TABLE OF CONTENTS Strabomantidae .................................................................................................................................................. 14-5-2 Bryophryne abramalagae (Strabomantidae) .............................................................................................. 14-5-2 Bryophryne flammiventris (Strabomantidae) ............................................................................................. 14-5-2 Bryophryne bustamantei (Strabomantidae) ................................................................................................ 14-5-2 Bryophryne zonalis (Strabomantidae) ........................................................................................................ 14-5-3 Bryophryne gymnotis (Strabomantidae) ..................................................................................................... 14-5-3 Bryophryne cophites (formerly Phrynopus cophites) (Cuzco Andes Frog, Strabomantidae) ................... 14-5-3 Bryophryne hanssaueri (Strobomantidae) ................................................................................................ -
Parental Care and the Evolution of Terrestriality in Frogs
This is a repository copy of Parental care and the evolution of terrestriality in frogs. White Rose Research Online URL for this paper: http://eprints.whiterose.ac.uk/145190/ Version: Accepted Version Article: Vági, B., Végvári, Z., Liker, A. et al. (2 more authors) (2019) Parental care and the evolution of terrestriality in frogs. Proceedings of the Royal Society B: Biological Sciences, 286 (1900). 20182737. ISSN 0962-8452 https://doi.org/10.1098/rspb.2018.2737 © 2019 The Author(s). This is an author-produced version of a paper subsequently published in Proceedings of the Royal Society B: Biological Sciences. Uploaded in accordance with the publisher's self-archiving policy. Reuse Items deposited in White Rose Research Online are protected by copyright, with all rights reserved unless indicated otherwise. They may be downloaded and/or printed for private study, or other acts as permitted by national copyright laws. The publisher or other rights holders may allow further reproduction and re-use of the full text version. This is indicated by the licence information on the White Rose Research Online record for the item. Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ Page 1 of 51 Submitted to Proceedings of the Royal Society B: For Review Only Research Parental care and the evolution of terrestriality in frogs Balzs Vgi1, Zsolt Végvri2,3, Andrs Liker4, Robert P. -
Journal of Vertebrate Paleontology the Earliest Record of the Endemic
This article was downloaded by: [Ohio University Libraries], [Nancy Stevens] On: 01 June 2015, At: 11:24 Publisher: Taylor & Francis Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: Mortimer House, 37-41 Mortimer Street, London W1T 3JH, UK Journal of Vertebrate Paleontology Publication details, including instructions for authors and subscription information: http://www.tandfonline.com/loi/ujvp20 The earliest record of the endemic African frog family Ptychadenidae from the Oligocene Nsungwe Formation of Tanzania David C. Blackburna, Eric M. Robertsb & Nancy J. Stevensc a Department of Vertebrate Zoology and Anthropology, 55 Music Concourse Drive, California Academy of Sciences, San Francisco, California, 94118, U.S.A. b School of Earth and Environmental Sciences, James Cook University, Townsville, Australia c Department of Biomedical Sciences, 228 Irvine Hall, Heritage College of Osteopathic Medicine, Center for Ecology and Evolutionary Studies, Ohio University, Athens, Ohio 45701, U.S.A. Click for updates Published online: 04 Mar 2015. To cite this article: David C. Blackburn, Eric M. Roberts & Nancy J. Stevens (2015) The earliest record of the endemic African frog family Ptychadenidae from the Oligocene Nsungwe Formation of Tanzania, Journal of Vertebrate Paleontology, 35:2, e907174, DOI: 10.1080/02724634.2014.907174 To link to this article: http://dx.doi.org/10.1080/02724634.2014.907174 PLEASE SCROLL DOWN FOR ARTICLE Taylor & Francis makes every effort to ensure the accuracy of all the information (the “Content”) contained in the publications on our platform. However, Taylor & Francis, our agents, and our licensors make no representations or warranties whatsoever as to the accuracy, completeness, or suitability for any purpose of the Content.