Ultrastructure of the Golgi Apparatus, Mitochondria and Endoplasmic Reticulum
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Common Features of All Cells Bacterial
www.denniskunkel.com Tour of the Cell part 1 Today’s Topics • Finish Nucleic Acids Cells • Properties of all cells – Prokaryotes and Eukaryotes • Functions of Major Cellular Organelles – Information – Synthesis&Transport – Energy Conversion – Recycling – Structure and Movement Bacterial cell Animal Cell 9/12/12 (Prokaryote) (Eukaryote) 2 www.denniskunkel.com Common features of all cells • Plasma Membrane – defines inside from outside • Cytosol – Semifluid “inside” of the cell • DNA “chromosomes” - Genetic material – hereditary instructions • Ribosomes – “factories” to synthesize proteins 4 Plasma membrane Bacterial (Prokaryotic) Cell Ribosomes! Plasma membrane! Bacterial Cell wall! chromosome ! Phospholipid bilayer Proteins 0.5 !m! Flagella! No internal membranes 5 6 1 Figure 6.2b 1 cm Eukaryotic Cell Frog egg 1 mm Human egg 100 µm Most plant and animal cells 10 m µ Nucleus Most bacteria Light microscopy Mitochondrion 1 µm Super- 100 nm Smallest bacteria Viruses resolution microscopy Ribosomes 10 nm Electron microscopy Proteins Lipids 1 nm Small molecules Contains internal organelles 7 0.1 nm Atoms endoplasmicENDOPLASMIC RETICULUM reticulum (ER) ENDOPLASMIC RETICULUM (ER) NUCLEUS NUCLEUS Rough ER Smooth ER nucleus Rough ER Smooth ER Nucleus Plasma membrane Plasma membrane Centrosome Centrosome cytoskeletonCYTOSKELETON CYTOSKELETON Microfilaments You should Microfilaments Intermediate filaments know everything Intermediate filaments Microtubules in Fig 6.9 ribosomesRibosomes Microtubules Ribosomes cytosol GolgiGolgi apparatus apparatus Golgi apparatus Peroxisome Peroxisome In animal cells but not plant cells: In animal cells but not plant cells: Lysosome Lysosomes Lysosome Lysosomes Figure 6.9 Centrioles Figure 6.9 Centrioles Mitochondrion lysosome Flagella (in some plant 9sperm) Mitochondrion Flagella (in some plant10 sperm) mitochondrion Nuclear envelope Nucleus Nucleus 1 !m Nucleolus Chromatin Nuclear envelope: Inner membrane Outer membrane Pores Pore complex Rough ER Surface of nuclear envelope. -
Physical and Chemical Basis of Cytoplasmic Streaming
Annual Reviews www.annualreviews.org/aronline .4n~t Rev. Plant Physiol 1981. 32:205-36 Copyright© 1981by AnnualReviews In~ All rights reserved PHYSICAL AND CHEMICAL BASIS OF CYTOPLASMIC ~7710 STREAMING Nobur6 Kamiya Department of Cell Biology, National Institute for Basic Biology, Okazaki, 444 Japan CONTENTS INTRODUCTION........................................................................................................ 206 SHUTI’LE STREAMINGIN THE MYXOMYCETEPLASMODIUM ................ 207 General...................................................................................................................... 207 ContractileProperties of the PlasmodialStrand ...................................................... 208 Activationcaused by stretching .................................................................................. 208 Activationcaused by loading .................................................................................... 209 Synchronizationof local ,hythms .............................................................................. 209 ContractileProteins .................................................................................................. 210 Plasmodiumactomyosin .......................................................................................... 210 Plusmodiummyosin ................................................................................................ 210 Plusmodiumactin.................................................................................................... 211 -
Overview of the Cytoskeleton from an Evolutionary Perspective
Downloaded from http://cshperspectives.cshlp.org/ on October 1, 2021 - Published by Cold Spring Harbor Laboratory Press Overview of the Cytoskeleton from an Evolutionary Perspective Thomas D. Pollard1 and Robert D. Goldman2 1Departments of Molecular Cellular and Developmental Biology, Molecular Biophysics and Biochemistry, and Cell Biology ,Yale University, New Haven, Connecticut 06520-8103 2Department of Cell and Molecular Biology, Northwestern University Feinberg School of Medicine, Chicago, Illinois 60611 Correspondence: [email protected] SUMMARY Organisms in the three domains of life depend on protein polymers to form a cytoskeleton that helps to establish their shapes, maintain their mechanical integrity, divide, and, in many cases, move. Eukaryotes have the most complex cytoskeletons, comprising three cytoskeletal poly- mers—actin filaments, intermediate filaments, and microtubules—acted on by three families of motor proteins (myosin, kinesin, and dynein). Prokaryotes have polymers of proteins ho- mologous to actin and tubulin but no motors, and a few bacteria have a protein related to intermediate filament proteins. Outline 1 Introduction—Overview of cellular 4 Overview of the evolution of the cytoskeleton functions 5 Conclusion 2 Structures of the cytoskeletal polymers References 3 Assembly of cytoskeletal polymers Editors: Thomas D. Pollard and Robert D. Goldman Additional Perspectives on The Cytoskeleton available at www.cshperspectives.org Copyright # 2018 Cold Spring Harbor Laboratory Press; all rights reserved; doi: 10.1101/cshperspect.a030288 Cite this article as Cold Spring Harb Perspect Biol 2018;10:a030288 1 Downloaded from http://cshperspectives.cshlp.org/ on October 1, 2021 - Published by Cold Spring Harbor Laboratory Press T.D. Pollard and R.D. Goldman 1 INTRODUCTION—OVERVIEW OF CELLULAR contrast, intermediate filaments do not serve as tracks for FUNCTIONS molecular motors (reviewed by Herrmann and Aebi 2016) but, rather, are transported by these motors. -
Phosphatases and Differentiation of the Golgi Apparatus
J. Cell Sci. 4, 455-497 (1969) 455 Printed in Great Britain PHOSPHATASES AND DIFFERENTIATION OF THE GOLGI APPARATUS MARIANNE DAUWALDER, W. G. WHALEY AND JOYCE E. KEPHART The Cell Research Institute, Tlie University of Texas at Austin, Texas, U.S.A. SUMMARY Cytochemical techniques for the electron microscopic localization of inosine diphosphatase, thiamine pyrophosphatase, and acid phosphatase have been applied to the developing root tip of Zea mays. Following formaldehyde fixation the Golgi apparatus of most of the cells showed reaction specificity for IDPase and TPPase. Following glutaraldehyde fixation marked localiza- tion of IDPase reactivity in the Golgi apparatus was limited to the root cap, the epidermis, and the phloem. A parallelism was apparent between the sequential morphological development of the apparatus for the secretion of a polysaccharide product, the fairly direct incorporation of tritiated glucose into the apparatus to become a component of this product and the develop- ment of the enzyme reactivity. Acid phosphatase, generally accepted as a lysosomal marker, was found in association with the Golgi apparatus in only a few cell types near the apex of the root. The localization was usually in a single cisterna at the face of the apparatus toward which the production of secretory vesicles builds up and associated regions of what may be smooth endoplasmic reticulum. Since the cell types involved were limited regions of the cap and epidermis and some initial cells, no functional correlates of the reactivity were apparent. Despite the presence of this lysosomal marker, no structures clearly identifiable as ' lysosomes' were found and the lack of reaction specificity in the vacuoles did not allow them to be so defined. -
Written Response #5
Written Response #5 • Draw and fill in the chart below about three different types of cells: Written Response #6-18 • In this true/false activity: • You and your partner will discuss the question, each of you will record your response and share your answer with the class. Be prepared to justify your answer. • You are allow to search answers. • You will be limited to 20 seconds per question. Written Response #6-18 6. The water-hating hydrophobic tails of the phospholipid bilayer face the outside of the cell membrane. 7. The cytoplasm essentially acts as a “skeleton” inside the cell. 8. Plant cells have special structures that are not found in animal cells, including a cell wall, a large central vacuole, and plastids. 9. Centrioles help organize chromosomes before cell division. 10. Ribosomes can be found attached to the endoplasmic reticulum. Written Response #6-18 11. ATP is made in the mitochondria. 12. Many of the biochemical reactions of the cell occur in the cytoplasm. 13. Animal cells have chloroplasts, organelles that capture light energy from the sun and use it to make food. 14. Small hydrophobic molecules can easily pass through the plasma membrane. 15. In cell-level organization, cells are not specialized for different functions. Written Response #6-18 16. Mitochondria contains its own DNA. 17. The plasma membrane is a single phospholipid layer that supports and protects a cell and controls what enters and leaves it. 18. The cytoskeleton is made from thread-like filaments and tubules. 3.2 HW 1. Describe the composition of the plasma membrane. -
The Mechanics of Motility in Dissociated Cytoplasm
THE MECHANICS OF MOTILITY IN DISSOCIATED CYTOPLASM MICAH DEMBO Theoretical Biophysics, Theoretical Division, Los Alamos National Laboratory, Group T-10, Mail Stop K710, Los Alamos, New Mexico 87545 ABSTRACT We stimulate the dynamical behavior of dissociated cytoplasm using the Reactive Flow Model (Dembo, M., and F. Harlow, 1986, Biophys. J., 50:109-121). We find that for the most part the predicted dynamical behavior of the cytoplasm is governed by three nondimensional numbers. Several other nondimensional parameters, the initial conditions, and boundary conditions are found to have lesser effects. Of the three major nondimensional parameters, one (D#) controls the percentage of ectoplasm, the second (CO) controls the sharpness of the endoplasm-ectoplasm boundary, and the third (R#) controls the topological complexity of the endoplasm-ectoplasm distribution. If R# is very small, then the cytoplasm contracts into a single uniform mass, and there is no bulk streaming. If R# is very large, then the cytoplasmic mass breaks up into a number of clumps scattered throughout the available volume. Between these clumps the solution undergoes turbulent or chaotic patterns of streaming. Intermediate values of R# can be found such that the mass of cytoplasm remains connected and yet undergoes coherent modes of motility similar to flares (Taylor, D.L., J.S. Condeelis, P.L. Moore, and R.D. Allen, 1973, J. Cell Biol., 59:378-394) and rosettes (Kuroda, K., 1979, Cell Motility: Molecules and Organization, 347-362). INTRODUCTION (Dembo et al., 1986). Here we will consider two experi- in which chemical reaction is an essential The reactive flow model is a putative description of motile mental systems fluid part of the dynamics. -
Studies on the Mechanisms of Autophagy: Formation of the Autophagic Vacuole W
Studies on the Mechanisms of Autophagy: Formation of the Autophagic Vacuole W. A. Dunn, Jr. Department of Anatomy and Cell Biology, University of Florida College of Medicine, Gainesville, Florida 32610 Abstract. Autophagic vacuoles form within 15 min of tophagic vacuoles. All these results suggested that au- perfusing a liver with amino acid-depleted medium. tophagic vacuoles were not formed from plasma mem- These vacuoles are bound by a "smooth" double mem- brane, Golgi apparatus, or endosome constituents. An- brane and do not contain acid phosphatase activity. In tisera prepared against integral membrane proteins (14, Downloaded from http://rupress.org/jcb/article-pdf/110/6/1923/1059547/1923.pdf by guest on 26 September 2021 an attempt to identify the membrane source of these 25, and 40 kD) of the RER was found to label the in- vacuoles, I have used morphological techniques com- ner and outer limiting membranes of almost all na- bined with immunological probes to localize specific scent autophagic vacuoles. In addition, ribophorin II membrane antigens to the limiting membranes of was identified at the limiting membranes of many na- newly formed or nascent autophagic vacuoles. Anti- scent autophagic vacuoles. Finally, secretory proteins, bodies to three integral membrane proteins of the rat serum albumin and alpha2o-globulin, were localized plasma membrane (CE9, HA4, and epidermal growth to the lumen of the RER and to the intramembrane factor receptor) and one of the Golgi apparatus space between the inner and outer membranes of some (sialyltransferase) did not label these vacuoles. Inter- of these vacuoles. The results were consistent with the nalized epidermal growth factor and its membrane formation of autophagic vacuoles from ribosome-free receptor were not found in nascent autophagic vacu- regions of the RER. -
Cell & Molecular Biology
BSC ZO- 102 B. Sc. I YEAR CELL & MOLECULAR BIOLOGY DEPARTMENT OF ZOOLOGY SCHOOL OF SCIENCES UTTARAKHAND OPEN UNIVERSITY BSCZO-102 Cell and Molecular Biology DEPARTMENT OF ZOOLOGY SCHOOL OF SCIENCES UTTARAKHAND OPEN UNIVERSITY Phone No. 05946-261122, 261123 Toll free No. 18001804025 Fax No. 05946-264232, E. mail [email protected] htpp://uou.ac.in Board of Studies and Programme Coordinator Board of Studies Prof. B.D.Joshi Prof. H.C.S.Bisht Retd.Prof. Department of Zoology Department of Zoology DSB Campus, Kumaun University, Gurukul Kangri, University Nainital Haridwar Prof. H.C.Tiwari Dr.N.N.Pandey Retd. Prof. & Principal Senior Scientist, Department of Zoology, Directorate of Coldwater Fisheries MB Govt.PG College (ICAR) Haldwani Nainital. Bhimtal (Nainital). Dr. Shyam S.Kunjwal Department of Zoology School of Sciences, Uttarakhand Open University Programme Coordinator Dr. Shyam S.Kunjwal Department of Zoology School of Sciences, Uttarakhand Open University Haldwani, Nainital Unit writing and Editing Editor Writer Dr.(Ms) Meenu Vats Dr.Mamtesh Kumari , Professor & Head Associate. Professor Department of Zoology, Department of Zoology DAV College,Sector-10 Govt. PG College Chandigarh-160011 Uttarkashi (Uttarakhand) Dr.Sunil Bhandari Asstt. Professor. Department of Zoology BGR Campus Pauri, HNB (Central University) Garhwal. Course Title and Code : Cell and Molecular Biology (BSCZO 102) ISBN : 978-93-85740-54-1 Copyright : Uttarakhand Open University Edition : 2017 Published By : Uttarakhand Open University, Haldwani, Nainital- 263139 Contents Course 1: Cell and Molecular Biology Course code: BSCZO102 Credit: 3 Unit Block and Unit title Page number Number Block 1 Cell Biology or Cytology 1-128 1 Cell Type : History and origin. -
Golgi-Apparatus.Pdf
GOLGI APPARATUS Cell Biology/B. Sc. Part III By: Dr. Bibha Kumari Dept. of Zoology Magadh Mahila College, Patna Email: [email protected] Golgi Apparatus • The Golgi apparatus (GA), also called Golgi body or Golgi complex and • found universally in both plant and animal cells, • is typically comprised of a series of five to eight cup- shaped, membrane-covered sacs called cisternae that look something like a stack of deflated balloons. • It is another packaging organelle like the endoplasmic reticulum (ER). It was named after Camillo Golgi (1897), an Italian biologist. • While layers of membranes may look like the rough ER, they have a very different function. Golgi….. • In some unicellular flagellates, however, as many as 60 cisternae may combine to make up the Golgi apparatus. • Similarly, the number of Golgi bodies in a cell varies according to its function. • Animal cells generally contain between ten and twenty Golgi stacks per cell, which are linked into a single complex by tubular connections between cisternae. • This complex is usually located close to the cell nucleus. Position in the cell Structure of Golgi Apparatus • A Golgi apparatus is composed of flat sacs known as cisternae. • The sacs are stacked in a bent, semicircular shape. • Each stacked grouping has a membrane that separates its insides from the cell's cytoplasm. • Golgi membrane protein interactions are responsible for their unique shape. • These interactions generate the force that shapes this organelle. Structure…. Structure…. Structure…… • The Golgi apparatus is very polar. • Membranes at one end of the stack differ in both composition and in thickness from those at the other end. -
Dynamics of Ribosome Association with the Endoplasmic Reticulum Membrane
Dynamics of Ribosome Association with the Endoplasmic Reticulum Membrane Dissertation zur Erlangung des Doktorgrades der Fakultaet fuer Biologie der Ludwig-Maximilians-Universitaet Muenchen vorgelegt von Dipl.-Biochem. Julia Schaletzky Mai 2006 Die vorliegende Arbeit wurde an der Harvard Medical School in Boston, MA (USA) unter der Anleitung von Prof. Tom Rapoport durchgefuehrt. Die dreidimensionale Struktur der von mir isolierten Komplexe wurde in Kollaboration mit Prof. Chris Akey (Boston University, USA) unter Anleitung von Dr. Jean-François Ménétret durch Cryo-Elektronenmikroskopie ermittelt. Die vorliegende Arbeit wurde zur Beurteilung eingereicht am 01.06.2006. Gutachter: Prof. Dr. J. Soll PD Dr. E. Schleiff Prof. Dr. M. Hayashi Prof. Dr. K. Jung Rigorosum: 20.09.2006 Ehrenwoertliche Versicherung Hiermit versichere ich, dass ich die vorliegende Arbeit selbstaendig verfasst und keine anderen als die von mir angegebenen Quellen und Hilfsmittel verwendet habe. Ferner erklaere ich, dass ich anderweitig nicht versucht habe, eine Dissertation einzureichen oder mich einer Doktorpruefung zu unterziehen. Die vorliegende Arbeit ist nicht als Ganzes oder in Teilen einer weiteren Pruefungskommission vorgelegt worden. Boston, 12.05.06 ........................................ (Julia Schaletzky) ACKNOWLEDGEMENTS I would like to thank Prof. Tom Rapoport for his continuing support and advice during the supervision of my project, and for being a great teacher and mentor. I would like to express my gratitude to Prof. Juergen Soll for generously agreeing to be my advisor and to lead my PhD committee. Prof. Stefan Jentsch deserves thanks for agreeing to examine my PhD thesis and for his constant support and help during the pursuit of my PhD. I am also grateful to Prof. -
Structure and Development of the Egg of the Glossiphoniid Leech Theromyzon Rude: Characterization of Developmental Stages and Structure of the Early Uncleaved Egg
Development 100, 211-225 (1987) 211 Printed in Great Britain © The Company of Biologists Limited 1987 Structure and development of the egg of the glossiphoniid leech Theromyzon rude: characterization of developmental stages and structure of the early uncleaved egg JUAN FERNANDEZ, NANCY OLEA and CECILIA MATTE Departamento de Biologia, Facultad de Ciendas, Untversidad de Chile, Casilla 653, Santiago, Chile Summary Some aspects of the reproductive biology of the meridional bands, during stage le, lead to accumu- glossiphoniid leech, Theromyzon rude, under labora- lation of ooplasm at both egg poles. In this manner, tory conditions, and the staging and structure of its the teloplasm or pole plasm forms. Completion of the uncleaved egg were studied. Sexually mature animals first cleavage furrow, by the end of stage If, is form breeding communities and fertilization occurs in preceded by dorsoventral flattening of the egg and the ovLsacs, presumably around the time of egg rearrangement of its teloplasm and perinuclear laying. Opposition may be postponed for hours or plasm. Structure of the early uncleaved egg has been days, but the eggs in the ovisacs remain blocked at studied with transmission and scanning electron mi- first meiotic metaphase. Development of the croscopy of intact or permeabilized preparations. The uncleaved egg, from the time of oviposit ion to com- plasmalemma forms numerous long and some short pletion of the first cleavage division, has been sub- microvilli evenly distributed across the egg surface. divided into six stages. At 20 °C, the six developmental The ectoplasm includes many vesicles, mitochondria, stages take 5-6 h. Characterization of' the stages is granules and an elaborate network of filament based on observations of both live and fixed/cleared bundles. -
Membrane Structure and Function
Chapter 7 Membrane Structure and Function Lecture Outline Overview: Life at the Edge • The plasma membrane separates the living cell from its surroundings. • This thin barrier, 8 nm thick, controls traffic into and out of the cell. • Like all biological membranes, the plasma membrane is selectively permeable, allowing some substances to cross more easily than others. • The formation of a membrane that encloses a solution different from the surrounding solution while still permitting the uptake of nutrients and the elimination of waste products was a key event in the evolution of life. • The ability of the cell to discriminate in its chemical exchanges with its environment is fundamental to life. • It is the plasma membrane and its component molecules that make this selectivity possible. Concept 7.1 Cellular membranes are fluid mosaics of lipids and proteins. • The main macromolecules in membranes are lipids and proteins, but carbohydrates are also important. • The most abundant lipids are phospholipids. • Phospholipids and most other membrane constituents are amphipathic molecules, which have both hydrophobic and hydrophilic regions. Membrane models have evolved to fit new data. • The arrangement of phospholipids and proteins in biological membranes is described by the fluid mosaic model. • In this model, the membrane is a fluid structure with a “mosaic” of various proteins embedded in or attached to a double layer (bilayer) of phospholipids. • Models of membranes were developed long before membranes were first seen with electron microscopes in the 1950s. • In 1915, membranes isolated from red blood cells were chemically analyzed and found to be composed of lipids and proteins. • In 1925, E.