The Role of the Cytoskeleton in the Structure and Function of the Golgi Apparatus Gustavo Egea and Rosa M
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Common Features of All Cells Bacterial
www.denniskunkel.com Tour of the Cell part 1 Today’s Topics • Finish Nucleic Acids Cells • Properties of all cells – Prokaryotes and Eukaryotes • Functions of Major Cellular Organelles – Information – Synthesis&Transport – Energy Conversion – Recycling – Structure and Movement Bacterial cell Animal Cell 9/12/12 (Prokaryote) (Eukaryote) 2 www.denniskunkel.com Common features of all cells • Plasma Membrane – defines inside from outside • Cytosol – Semifluid “inside” of the cell • DNA “chromosomes” - Genetic material – hereditary instructions • Ribosomes – “factories” to synthesize proteins 4 Plasma membrane Bacterial (Prokaryotic) Cell Ribosomes! Plasma membrane! Bacterial Cell wall! chromosome ! Phospholipid bilayer Proteins 0.5 !m! Flagella! No internal membranes 5 6 1 Figure 6.2b 1 cm Eukaryotic Cell Frog egg 1 mm Human egg 100 µm Most plant and animal cells 10 m µ Nucleus Most bacteria Light microscopy Mitochondrion 1 µm Super- 100 nm Smallest bacteria Viruses resolution microscopy Ribosomes 10 nm Electron microscopy Proteins Lipids 1 nm Small molecules Contains internal organelles 7 0.1 nm Atoms endoplasmicENDOPLASMIC RETICULUM reticulum (ER) ENDOPLASMIC RETICULUM (ER) NUCLEUS NUCLEUS Rough ER Smooth ER nucleus Rough ER Smooth ER Nucleus Plasma membrane Plasma membrane Centrosome Centrosome cytoskeletonCYTOSKELETON CYTOSKELETON Microfilaments You should Microfilaments Intermediate filaments know everything Intermediate filaments Microtubules in Fig 6.9 ribosomesRibosomes Microtubules Ribosomes cytosol GolgiGolgi apparatus apparatus Golgi apparatus Peroxisome Peroxisome In animal cells but not plant cells: In animal cells but not plant cells: Lysosome Lysosomes Lysosome Lysosomes Figure 6.9 Centrioles Figure 6.9 Centrioles Mitochondrion lysosome Flagella (in some plant 9sperm) Mitochondrion Flagella (in some plant10 sperm) mitochondrion Nuclear envelope Nucleus Nucleus 1 !m Nucleolus Chromatin Nuclear envelope: Inner membrane Outer membrane Pores Pore complex Rough ER Surface of nuclear envelope. -
Table 1 Gene Name Increased Or Decreased in LTD
Table_1 gene_name increased or decreased in LTD protein_id description keep_supernatant keep_pellet comparison sample hit_annotation_methodpvalue fdr hit hit_annotation 2010300C02RIK increased E9Q3M9 Protein 2010300C02Rik OS=Mus musculus GN=2010300C02Rik PE=1 SV=1 TRUE TRUE NMDA - control pellet fdrtool 0,074667 0,584087 FALSE trend 2310035C23RIK|KIAA1468increased A0A087WSS1|E9QM90|Q148V7|Q148V7-2 Protein 2310035C23Rik OS=Mus musculus GN=2310035C23Rik PE=1 SV=1|Protein 2310035C23Rik OS=Mus musculusTRUE GN=2310035C23Rik PE=1 SV=2|LisH FALSE domain NMDAand HEAT - control repeat-containing protein KIAA1468 supernatant OS=Mus musculus GN=Kiaa1468 fdrtoolPE=1 SV=1|Isoform 0,080056 2 of 0,589077LisH domain FALSEand HEAT trend repeat-containing protein KIAA1468 OS=Mus musculus GN=Kiaa1468 ABR increased E9PUE7|Q5SSL4|Q5SSL4-2|Q5SSL4-3|Q5SSL4-4 Active breakpoint cluster region-related protein OS=Mus musculus GN=Abr PE=1 SV=1|Isoform 2 of Active breakpointTRUE cluster region-related protein TRUE OS=Mus musculus NMDA GN=Abr|Isoform - control 3 of Active breakpoint supernatant cluster region-related protein OS=Mus fdrtool musculus 0,08128 GN=Abr|Isoform 0,592743 4 of Active FALSE breakpoint trend cluster region-related protein OS=Mus musculus GN=Abr ADAM22 increased D3YUP9|Q9R1V6|Q9R1V6-10|Q9R1V6-11|Q9R1V6-12|Q9R1V6-13|Q9R1V6-14|Q9R1V6-15|Q9R1V6-17|Q9R1V6-4|Q9R1V6-5|Q9R1V6-6|Q9R1V6-7|Q9R1V6-8Disintegrin and metalloproteinase domain-containing protein 22 OS=Mus musculus GN=Adam22 PE=1 SV=1|DisintegrinFALSE and metalloproteinase domain-containing TRUE -
An Animal Model with a Cardiomyocyte-Specific Deletion of Estrogen Receptor Alpha: Functional, Metabolic, and Differential Netwo
Washington University School of Medicine Digital Commons@Becker Open Access Publications 2014 An animal model with a cardiomyocyte-specific deletion of estrogen receptor alpha: Functional, metabolic, and differential network analysis Sriram Devanathan Washington University School of Medicine in St. Louis Timothy Whitehead Washington University School of Medicine in St. Louis George G. Schweitzer Washington University School of Medicine in St. Louis Nicole Fettig Washington University School of Medicine in St. Louis Attila Kovacs Washington University School of Medicine in St. Louis See next page for additional authors Follow this and additional works at: https://digitalcommons.wustl.edu/open_access_pubs Recommended Citation Devanathan, Sriram; Whitehead, Timothy; Schweitzer, George G.; Fettig, Nicole; Kovacs, Attila; Korach, Kenneth S.; Finck, Brian N.; and Shoghi, Kooresh I., ,"An animal model with a cardiomyocyte-specific deletion of estrogen receptor alpha: Functional, metabolic, and differential network analysis." PLoS One.9,7. e101900. (2014). https://digitalcommons.wustl.edu/open_access_pubs/3326 This Open Access Publication is brought to you for free and open access by Digital Commons@Becker. It has been accepted for inclusion in Open Access Publications by an authorized administrator of Digital Commons@Becker. For more information, please contact [email protected]. Authors Sriram Devanathan, Timothy Whitehead, George G. Schweitzer, Nicole Fettig, Attila Kovacs, Kenneth S. Korach, Brian N. Finck, and Kooresh I. Shoghi This open access publication is available at Digital Commons@Becker: https://digitalcommons.wustl.edu/open_access_pubs/3326 An Animal Model with a Cardiomyocyte-Specific Deletion of Estrogen Receptor Alpha: Functional, Metabolic, and Differential Network Analysis Sriram Devanathan1, Timothy Whitehead1, George G. Schweitzer2, Nicole Fettig1, Attila Kovacs3, Kenneth S. -
Phosphatases and Differentiation of the Golgi Apparatus
J. Cell Sci. 4, 455-497 (1969) 455 Printed in Great Britain PHOSPHATASES AND DIFFERENTIATION OF THE GOLGI APPARATUS MARIANNE DAUWALDER, W. G. WHALEY AND JOYCE E. KEPHART The Cell Research Institute, Tlie University of Texas at Austin, Texas, U.S.A. SUMMARY Cytochemical techniques for the electron microscopic localization of inosine diphosphatase, thiamine pyrophosphatase, and acid phosphatase have been applied to the developing root tip of Zea mays. Following formaldehyde fixation the Golgi apparatus of most of the cells showed reaction specificity for IDPase and TPPase. Following glutaraldehyde fixation marked localiza- tion of IDPase reactivity in the Golgi apparatus was limited to the root cap, the epidermis, and the phloem. A parallelism was apparent between the sequential morphological development of the apparatus for the secretion of a polysaccharide product, the fairly direct incorporation of tritiated glucose into the apparatus to become a component of this product and the develop- ment of the enzyme reactivity. Acid phosphatase, generally accepted as a lysosomal marker, was found in association with the Golgi apparatus in only a few cell types near the apex of the root. The localization was usually in a single cisterna at the face of the apparatus toward which the production of secretory vesicles builds up and associated regions of what may be smooth endoplasmic reticulum. Since the cell types involved were limited regions of the cap and epidermis and some initial cells, no functional correlates of the reactivity were apparent. Despite the presence of this lysosomal marker, no structures clearly identifiable as ' lysosomes' were found and the lack of reaction specificity in the vacuoles did not allow them to be so defined. -
Written Response #5
Written Response #5 • Draw and fill in the chart below about three different types of cells: Written Response #6-18 • In this true/false activity: • You and your partner will discuss the question, each of you will record your response and share your answer with the class. Be prepared to justify your answer. • You are allow to search answers. • You will be limited to 20 seconds per question. Written Response #6-18 6. The water-hating hydrophobic tails of the phospholipid bilayer face the outside of the cell membrane. 7. The cytoplasm essentially acts as a “skeleton” inside the cell. 8. Plant cells have special structures that are not found in animal cells, including a cell wall, a large central vacuole, and plastids. 9. Centrioles help organize chromosomes before cell division. 10. Ribosomes can be found attached to the endoplasmic reticulum. Written Response #6-18 11. ATP is made in the mitochondria. 12. Many of the biochemical reactions of the cell occur in the cytoplasm. 13. Animal cells have chloroplasts, organelles that capture light energy from the sun and use it to make food. 14. Small hydrophobic molecules can easily pass through the plasma membrane. 15. In cell-level organization, cells are not specialized for different functions. Written Response #6-18 16. Mitochondria contains its own DNA. 17. The plasma membrane is a single phospholipid layer that supports and protects a cell and controls what enters and leaves it. 18. The cytoskeleton is made from thread-like filaments and tubules. 3.2 HW 1. Describe the composition of the plasma membrane. -
Serum Albumin OS=Homo Sapiens
Protein Name Cluster of Glial fibrillary acidic protein OS=Homo sapiens GN=GFAP PE=1 SV=1 (P14136) Serum albumin OS=Homo sapiens GN=ALB PE=1 SV=2 Cluster of Isoform 3 of Plectin OS=Homo sapiens GN=PLEC (Q15149-3) Cluster of Hemoglobin subunit beta OS=Homo sapiens GN=HBB PE=1 SV=2 (P68871) Vimentin OS=Homo sapiens GN=VIM PE=1 SV=4 Cluster of Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1 SV=2 (Q13509) Cluster of Actin, cytoplasmic 1 OS=Homo sapiens GN=ACTB PE=1 SV=1 (P60709) Cluster of Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B PE=1 SV=1 (P68363) Cluster of Isoform 2 of Spectrin alpha chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTAN1 (Q13813-2) Hemoglobin subunit alpha OS=Homo sapiens GN=HBA1 PE=1 SV=2 Cluster of Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTBN1 PE=1 SV=2 (Q01082) Cluster of Pyruvate kinase isozymes M1/M2 OS=Homo sapiens GN=PKM PE=1 SV=4 (P14618) Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3 Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5 Filamin-A OS=Homo sapiens GN=FLNA PE=1 SV=4 Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5 Cluster of ATPase, Na+/K+ transporting, alpha 2 (+) polypeptide OS=Homo sapiens GN=ATP1A2 PE=3 SV=1 (B1AKY9) Fibrinogen beta chain OS=Homo sapiens GN=FGB PE=1 SV=2 Fibrinogen alpha chain OS=Homo sapiens GN=FGA PE=1 SV=2 Dihydropyrimidinase-related protein 2 OS=Homo sapiens GN=DPYSL2 PE=1 SV=1 Cluster of Alpha-actinin-1 OS=Homo sapiens GN=ACTN1 PE=1 SV=2 (P12814) 60 kDa heat shock protein, mitochondrial OS=Homo -
Studies on the Mechanisms of Autophagy: Formation of the Autophagic Vacuole W
Studies on the Mechanisms of Autophagy: Formation of the Autophagic Vacuole W. A. Dunn, Jr. Department of Anatomy and Cell Biology, University of Florida College of Medicine, Gainesville, Florida 32610 Abstract. Autophagic vacuoles form within 15 min of tophagic vacuoles. All these results suggested that au- perfusing a liver with amino acid-depleted medium. tophagic vacuoles were not formed from plasma mem- These vacuoles are bound by a "smooth" double mem- brane, Golgi apparatus, or endosome constituents. An- brane and do not contain acid phosphatase activity. In tisera prepared against integral membrane proteins (14, Downloaded from http://rupress.org/jcb/article-pdf/110/6/1923/1059547/1923.pdf by guest on 26 September 2021 an attempt to identify the membrane source of these 25, and 40 kD) of the RER was found to label the in- vacuoles, I have used morphological techniques com- ner and outer limiting membranes of almost all na- bined with immunological probes to localize specific scent autophagic vacuoles. In addition, ribophorin II membrane antigens to the limiting membranes of was identified at the limiting membranes of many na- newly formed or nascent autophagic vacuoles. Anti- scent autophagic vacuoles. Finally, secretory proteins, bodies to three integral membrane proteins of the rat serum albumin and alpha2o-globulin, were localized plasma membrane (CE9, HA4, and epidermal growth to the lumen of the RER and to the intramembrane factor receptor) and one of the Golgi apparatus space between the inner and outer membranes of some (sialyltransferase) did not label these vacuoles. Inter- of these vacuoles. The results were consistent with the nalized epidermal growth factor and its membrane formation of autophagic vacuoles from ribosome-free receptor were not found in nascent autophagic vacu- regions of the RER. -
The Role of the Actin Cytoskeleton During Muscle Development In
THE ROLE OF THE ACTIN CYTOSKELETON DURING MUSCLE DEVELOPMENT IN DROSOPHILA AND MOUSE by Shannon Faye Yu A Dissertation Presented to the Faculty of the Louis V. Gerstner, Jr. Graduate School of the Biomedical Sciences in Partial Fulfillment of the Requirements of the Degree of Doctor of Philosophy New York, NY Oct, 2013 Mary K. Baylies, PhD! Date Dissertation Mentor Copyright by Shannon F. Yu 2013 ABSTRACT The actin cytoskeleton is essential for many processes within a developing organism. Unsurprisingly, actin and its regulators underpin many of the critical steps in the formation and function of muscle tissue. These include cell division during the specification of muscle progenitors, myoblast fusion, muscle elongation and attachment, and muscle maturation, including sarcomere assembly. Analysis in Drosophila has focused on regulators of actin polymerization particularly during myoblast fusion, and the conservation of many of the actin regulators required for muscle development has not yet been tested. In addition, dynamic actin processes also require the depolymerization of existing actin fibers to replenish the pool of actin monomers available for polymerization. Despite this, the role of actin depolymerization has not been described in depth in Drosophila or mammalian muscle development. ! Here, we first examine the role of the actin depolymerization factor Twinstar (Tsr) in muscle development in Drosophila. We show that Twinstar, the sole Drosophila member of the ADF/cofilin family of actin depolymerization proteins, is expressed in muscle where it is essential for development. tsr mutant embryos displayed a number of muscle defects, including muscle loss and muscle misattachment. Further, regulators of Tsr, including a Tsr-inactivating kinase, Center divider, a Tsr-activating phosphatase, Slingshot and a synergistic partner in depolymerization, Flare, are also required for embryonic muscle development. -
Golgi-Apparatus.Pdf
GOLGI APPARATUS Cell Biology/B. Sc. Part III By: Dr. Bibha Kumari Dept. of Zoology Magadh Mahila College, Patna Email: [email protected] Golgi Apparatus • The Golgi apparatus (GA), also called Golgi body or Golgi complex and • found universally in both plant and animal cells, • is typically comprised of a series of five to eight cup- shaped, membrane-covered sacs called cisternae that look something like a stack of deflated balloons. • It is another packaging organelle like the endoplasmic reticulum (ER). It was named after Camillo Golgi (1897), an Italian biologist. • While layers of membranes may look like the rough ER, they have a very different function. Golgi….. • In some unicellular flagellates, however, as many as 60 cisternae may combine to make up the Golgi apparatus. • Similarly, the number of Golgi bodies in a cell varies according to its function. • Animal cells generally contain between ten and twenty Golgi stacks per cell, which are linked into a single complex by tubular connections between cisternae. • This complex is usually located close to the cell nucleus. Position in the cell Structure of Golgi Apparatus • A Golgi apparatus is composed of flat sacs known as cisternae. • The sacs are stacked in a bent, semicircular shape. • Each stacked grouping has a membrane that separates its insides from the cell's cytoplasm. • Golgi membrane protein interactions are responsible for their unique shape. • These interactions generate the force that shapes this organelle. Structure…. Structure…. Structure…… • The Golgi apparatus is very polar. • Membranes at one end of the stack differ in both composition and in thickness from those at the other end. -
Dynamics of Ribosome Association with the Endoplasmic Reticulum Membrane
Dynamics of Ribosome Association with the Endoplasmic Reticulum Membrane Dissertation zur Erlangung des Doktorgrades der Fakultaet fuer Biologie der Ludwig-Maximilians-Universitaet Muenchen vorgelegt von Dipl.-Biochem. Julia Schaletzky Mai 2006 Die vorliegende Arbeit wurde an der Harvard Medical School in Boston, MA (USA) unter der Anleitung von Prof. Tom Rapoport durchgefuehrt. Die dreidimensionale Struktur der von mir isolierten Komplexe wurde in Kollaboration mit Prof. Chris Akey (Boston University, USA) unter Anleitung von Dr. Jean-François Ménétret durch Cryo-Elektronenmikroskopie ermittelt. Die vorliegende Arbeit wurde zur Beurteilung eingereicht am 01.06.2006. Gutachter: Prof. Dr. J. Soll PD Dr. E. Schleiff Prof. Dr. M. Hayashi Prof. Dr. K. Jung Rigorosum: 20.09.2006 Ehrenwoertliche Versicherung Hiermit versichere ich, dass ich die vorliegende Arbeit selbstaendig verfasst und keine anderen als die von mir angegebenen Quellen und Hilfsmittel verwendet habe. Ferner erklaere ich, dass ich anderweitig nicht versucht habe, eine Dissertation einzureichen oder mich einer Doktorpruefung zu unterziehen. Die vorliegende Arbeit ist nicht als Ganzes oder in Teilen einer weiteren Pruefungskommission vorgelegt worden. Boston, 12.05.06 ........................................ (Julia Schaletzky) ACKNOWLEDGEMENTS I would like to thank Prof. Tom Rapoport for his continuing support and advice during the supervision of my project, and for being a great teacher and mentor. I would like to express my gratitude to Prof. Juergen Soll for generously agreeing to be my advisor and to lead my PhD committee. Prof. Stefan Jentsch deserves thanks for agreeing to examine my PhD thesis and for his constant support and help during the pursuit of my PhD. I am also grateful to Prof. -
Arole of Cofilin/Destrin in Reorganization of Actin
CELL STRUCTURE AND FUNCTION 21: 421-424 (1996) © 1996 by Japan Society for Cell Biology A Role of Cofilin/Destrin in Reorganization of Actin Cytoskeleton in Response to Stresses and Cell Stimuli Ichiro Yahara1, Hiroyuki Aizawa1, Kenji Moriyama1, Kazuko Iida1, Naoto Yonezawa3, Eisuke Nishida4, Hideki Hatanaka2, and Fuyuhiko Inagaki2 department of Cell Biology, ^Department of Molecular Physiology, The Tokyo Metropolitan Institute ofMedi- cal Science, Tokyo 113, *Department of Chemistry, Faculty of Science, Chiba University, Chiba 263, and insti- tute for Virus Research, Kyoto University, Kyoto 606-01 Key words: cofilin/actin/stress response/heat shock/nuclear translocation Various cellular events such as cell motility and divi- tyostelium discoideum (K.I. and H.A. , unpublished ob- sion are directed by the actin cytoskeleton under the con- servations). As will be seen below, phosphorylated cofi- trol of its regulatory system. Cofilin is a low molecular lin is inactive in the interaction with actin (3, 23, 24). weight actin-modulating protein that was originally iso- Thus it would be possible that growing cells of lower eu- lated from porcine brain (26) and is ubiquitously distri- caryotes might not need to inactivate cofilin whereas a buted in eucaryotes from the budding yeast to mam- portion of cofilin is always inactivated in resting cells of mals (4, 14, 21). Cofilin binds to actin in both monomer- higher eucaryotes. ic and polymerized forms in a 1:1 molar ratio and depo- In this review, we briefly summarize current progress lymerizes F-actin in a pH-dependent manner (26, 32). on research on structure and function of cofilin and dis- In vitro experiments indicated that cofilin binds and cuss a role(s) of cofilin in cellular responses. -
The Interaction Between Actin Filaments and the Cytoskeleton-Membrane Attachment Site Protein Talin Jinwen Zhang Iowa State University
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 1995 The interaction between actin filaments and the cytoskeleton-membrane attachment site protein talin Jinwen Zhang Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Biochemistry Commons, and the Cell Biology Commons Recommended Citation Zhang, Jinwen, "The interaction between actin filaments and the cytoskeleton-membrane attachment site protein talin " (1995). Retrospective Theses and Dissertations. 11104. https://lib.dr.iastate.edu/rtd/11104 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. INFORMATION TO USERS T^ manuscript has been reproduced from ±e microfilm master. UMI films the text directly fi'om the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter face, while others may be from aiqr ^pe of computer printer. The quality of this reprodaction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversefy affect reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted Also, if unauthorized copyright material had to be removed, a note win indicate the deletion. • Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper left-hand comer and continuing from left to right in equal sections with small overlaps.