The Interaction Between Actin Filaments and the Cytoskeleton-Membrane Attachment Site Protein Talin Jinwen Zhang Iowa State University
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Table 1 Gene Name Increased Or Decreased in LTD
Table_1 gene_name increased or decreased in LTD protein_id description keep_supernatant keep_pellet comparison sample hit_annotation_methodpvalue fdr hit hit_annotation 2010300C02RIK increased E9Q3M9 Protein 2010300C02Rik OS=Mus musculus GN=2010300C02Rik PE=1 SV=1 TRUE TRUE NMDA - control pellet fdrtool 0,074667 0,584087 FALSE trend 2310035C23RIK|KIAA1468increased A0A087WSS1|E9QM90|Q148V7|Q148V7-2 Protein 2310035C23Rik OS=Mus musculus GN=2310035C23Rik PE=1 SV=1|Protein 2310035C23Rik OS=Mus musculusTRUE GN=2310035C23Rik PE=1 SV=2|LisH FALSE domain NMDAand HEAT - control repeat-containing protein KIAA1468 supernatant OS=Mus musculus GN=Kiaa1468 fdrtoolPE=1 SV=1|Isoform 0,080056 2 of 0,589077LisH domain FALSEand HEAT trend repeat-containing protein KIAA1468 OS=Mus musculus GN=Kiaa1468 ABR increased E9PUE7|Q5SSL4|Q5SSL4-2|Q5SSL4-3|Q5SSL4-4 Active breakpoint cluster region-related protein OS=Mus musculus GN=Abr PE=1 SV=1|Isoform 2 of Active breakpointTRUE cluster region-related protein TRUE OS=Mus musculus NMDA GN=Abr|Isoform - control 3 of Active breakpoint supernatant cluster region-related protein OS=Mus fdrtool musculus 0,08128 GN=Abr|Isoform 0,592743 4 of Active FALSE breakpoint trend cluster region-related protein OS=Mus musculus GN=Abr ADAM22 increased D3YUP9|Q9R1V6|Q9R1V6-10|Q9R1V6-11|Q9R1V6-12|Q9R1V6-13|Q9R1V6-14|Q9R1V6-15|Q9R1V6-17|Q9R1V6-4|Q9R1V6-5|Q9R1V6-6|Q9R1V6-7|Q9R1V6-8Disintegrin and metalloproteinase domain-containing protein 22 OS=Mus musculus GN=Adam22 PE=1 SV=1|DisintegrinFALSE and metalloproteinase domain-containing TRUE -
An Animal Model with a Cardiomyocyte-Specific Deletion of Estrogen Receptor Alpha: Functional, Metabolic, and Differential Netwo
Washington University School of Medicine Digital Commons@Becker Open Access Publications 2014 An animal model with a cardiomyocyte-specific deletion of estrogen receptor alpha: Functional, metabolic, and differential network analysis Sriram Devanathan Washington University School of Medicine in St. Louis Timothy Whitehead Washington University School of Medicine in St. Louis George G. Schweitzer Washington University School of Medicine in St. Louis Nicole Fettig Washington University School of Medicine in St. Louis Attila Kovacs Washington University School of Medicine in St. Louis See next page for additional authors Follow this and additional works at: https://digitalcommons.wustl.edu/open_access_pubs Recommended Citation Devanathan, Sriram; Whitehead, Timothy; Schweitzer, George G.; Fettig, Nicole; Kovacs, Attila; Korach, Kenneth S.; Finck, Brian N.; and Shoghi, Kooresh I., ,"An animal model with a cardiomyocyte-specific deletion of estrogen receptor alpha: Functional, metabolic, and differential network analysis." PLoS One.9,7. e101900. (2014). https://digitalcommons.wustl.edu/open_access_pubs/3326 This Open Access Publication is brought to you for free and open access by Digital Commons@Becker. It has been accepted for inclusion in Open Access Publications by an authorized administrator of Digital Commons@Becker. For more information, please contact [email protected]. Authors Sriram Devanathan, Timothy Whitehead, George G. Schweitzer, Nicole Fettig, Attila Kovacs, Kenneth S. Korach, Brian N. Finck, and Kooresh I. Shoghi This open access publication is available at Digital Commons@Becker: https://digitalcommons.wustl.edu/open_access_pubs/3326 An Animal Model with a Cardiomyocyte-Specific Deletion of Estrogen Receptor Alpha: Functional, Metabolic, and Differential Network Analysis Sriram Devanathan1, Timothy Whitehead1, George G. Schweitzer2, Nicole Fettig1, Attila Kovacs3, Kenneth S. -
Serum Albumin OS=Homo Sapiens
Protein Name Cluster of Glial fibrillary acidic protein OS=Homo sapiens GN=GFAP PE=1 SV=1 (P14136) Serum albumin OS=Homo sapiens GN=ALB PE=1 SV=2 Cluster of Isoform 3 of Plectin OS=Homo sapiens GN=PLEC (Q15149-3) Cluster of Hemoglobin subunit beta OS=Homo sapiens GN=HBB PE=1 SV=2 (P68871) Vimentin OS=Homo sapiens GN=VIM PE=1 SV=4 Cluster of Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1 SV=2 (Q13509) Cluster of Actin, cytoplasmic 1 OS=Homo sapiens GN=ACTB PE=1 SV=1 (P60709) Cluster of Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B PE=1 SV=1 (P68363) Cluster of Isoform 2 of Spectrin alpha chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTAN1 (Q13813-2) Hemoglobin subunit alpha OS=Homo sapiens GN=HBA1 PE=1 SV=2 Cluster of Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens GN=SPTBN1 PE=1 SV=2 (Q01082) Cluster of Pyruvate kinase isozymes M1/M2 OS=Homo sapiens GN=PKM PE=1 SV=4 (P14618) Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3 Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5 Filamin-A OS=Homo sapiens GN=FLNA PE=1 SV=4 Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5 Cluster of ATPase, Na+/K+ transporting, alpha 2 (+) polypeptide OS=Homo sapiens GN=ATP1A2 PE=3 SV=1 (B1AKY9) Fibrinogen beta chain OS=Homo sapiens GN=FGB PE=1 SV=2 Fibrinogen alpha chain OS=Homo sapiens GN=FGA PE=1 SV=2 Dihydropyrimidinase-related protein 2 OS=Homo sapiens GN=DPYSL2 PE=1 SV=1 Cluster of Alpha-actinin-1 OS=Homo sapiens GN=ACTN1 PE=1 SV=2 (P12814) 60 kDa heat shock protein, mitochondrial OS=Homo -
The Role of the Actin Cytoskeleton During Muscle Development In
THE ROLE OF THE ACTIN CYTOSKELETON DURING MUSCLE DEVELOPMENT IN DROSOPHILA AND MOUSE by Shannon Faye Yu A Dissertation Presented to the Faculty of the Louis V. Gerstner, Jr. Graduate School of the Biomedical Sciences in Partial Fulfillment of the Requirements of the Degree of Doctor of Philosophy New York, NY Oct, 2013 Mary K. Baylies, PhD! Date Dissertation Mentor Copyright by Shannon F. Yu 2013 ABSTRACT The actin cytoskeleton is essential for many processes within a developing organism. Unsurprisingly, actin and its regulators underpin many of the critical steps in the formation and function of muscle tissue. These include cell division during the specification of muscle progenitors, myoblast fusion, muscle elongation and attachment, and muscle maturation, including sarcomere assembly. Analysis in Drosophila has focused on regulators of actin polymerization particularly during myoblast fusion, and the conservation of many of the actin regulators required for muscle development has not yet been tested. In addition, dynamic actin processes also require the depolymerization of existing actin fibers to replenish the pool of actin monomers available for polymerization. Despite this, the role of actin depolymerization has not been described in depth in Drosophila or mammalian muscle development. ! Here, we first examine the role of the actin depolymerization factor Twinstar (Tsr) in muscle development in Drosophila. We show that Twinstar, the sole Drosophila member of the ADF/cofilin family of actin depolymerization proteins, is expressed in muscle where it is essential for development. tsr mutant embryos displayed a number of muscle defects, including muscle loss and muscle misattachment. Further, regulators of Tsr, including a Tsr-inactivating kinase, Center divider, a Tsr-activating phosphatase, Slingshot and a synergistic partner in depolymerization, Flare, are also required for embryonic muscle development. -
Arole of Cofilin/Destrin in Reorganization of Actin
CELL STRUCTURE AND FUNCTION 21: 421-424 (1996) © 1996 by Japan Society for Cell Biology A Role of Cofilin/Destrin in Reorganization of Actin Cytoskeleton in Response to Stresses and Cell Stimuli Ichiro Yahara1, Hiroyuki Aizawa1, Kenji Moriyama1, Kazuko Iida1, Naoto Yonezawa3, Eisuke Nishida4, Hideki Hatanaka2, and Fuyuhiko Inagaki2 department of Cell Biology, ^Department of Molecular Physiology, The Tokyo Metropolitan Institute ofMedi- cal Science, Tokyo 113, *Department of Chemistry, Faculty of Science, Chiba University, Chiba 263, and insti- tute for Virus Research, Kyoto University, Kyoto 606-01 Key words: cofilin/actin/stress response/heat shock/nuclear translocation Various cellular events such as cell motility and divi- tyostelium discoideum (K.I. and H.A. , unpublished ob- sion are directed by the actin cytoskeleton under the con- servations). As will be seen below, phosphorylated cofi- trol of its regulatory system. Cofilin is a low molecular lin is inactive in the interaction with actin (3, 23, 24). weight actin-modulating protein that was originally iso- Thus it would be possible that growing cells of lower eu- lated from porcine brain (26) and is ubiquitously distri- caryotes might not need to inactivate cofilin whereas a buted in eucaryotes from the budding yeast to mam- portion of cofilin is always inactivated in resting cells of mals (4, 14, 21). Cofilin binds to actin in both monomer- higher eucaryotes. ic and polymerized forms in a 1:1 molar ratio and depo- In this review, we briefly summarize current progress lymerizes F-actin in a pH-dependent manner (26, 32). on research on structure and function of cofilin and dis- In vitro experiments indicated that cofilin binds and cuss a role(s) of cofilin in cellular responses. -
The Role of the Cytoskeleton in the Structure and Function of the Golgi Apparatus Gustavo Egea and Rosa M
The role of the cytoskeleton in the structure and function of GA * 1 The role of the cytoskeleton in the structure and function of the Golgi apparatus Gustavo Egea and Rosa M. Ríos Introduction Cellular organelles in mammalian cells are individualized membrane entities that often become spherical. The endoplasmic reticulum (ER) and the Golgi apparatus (GA) are exceptions to this rule, as they are respectively made up of a continuous tubular network and a pile of flat disks. Their unique shapes are regulated by molecular elements (Kepes et al. 2005; Levine and Rabouille 2005), including the cytoskeleton. All cytoskeletal elements, together with cytoskeleton-associated motors and non-motor proteins, have a role in the subcellular positioning, biogenesis and function of most organelles, being particularly relevant in the GA. The GA is the central organelle of the eukaryotic secretory pathway. While its basic function is highly conserved, the GA varies greatly in shape and number from one organism to another. In the simplest organisms like budding yeast Saccharomyces cerevisiae, the organelle takes the form of dispersed cisternae or isolated tubular networks (Preuss et al. 1992; Ram- bourg et al. 2001). Unicellular green alga (Henderson et al. 2007) and many protozoa like Toxoplasma gondii (Pelletier et al. 2002) and Trypanosoma brucei (He 2007; He et al. 2004) contain a single pile of flattened cisternae aligned in parallel. The organization of the GA in this manner is referred to as a Golgi stack, which usually contains two regions: one central and poorly fenestrated (compact) and other lateral and highly fenestrated (non-com- pact) (Kepes et al. -
Supplemental Table 1
Symbol Gene name MIN6.EXO MIN6.M1 MIN6.M2 MIN6.M3 MIN6.M4 A2m alpha-2-macroglobulin A2m Acat1 acetyl-Coenzyme A acetyltransferase 1 Acat1 Acly ATP citrate lyase Acly Acly Acly Act Actin Act Act Act Act Aga aspartylglucosaminidase Aga Ahcy S-adenosylhomocysteine hydrolase Ahcy Alb Albumin Alb Alb Alb Aldoa aldolase A, fructose-bisphosphate Aldoa Anxa5 Annexin A5 Anxa5 AP1 Adaptor-related protein complex AP1 AP2 Adaptor protein complex AP2 Arf1 ADP-ribosylation factor 1 Arf1 Atp1a1 ATPase Na/K transpoting Atp1a1 ATP1b1 Na/K ATPase beta subunit ATP1b1 ATP6V1 ATPase, H+ transporting.. ATP6V1 ATP6v1 ATP6v1 Banf1 Barrier to autointegration factor Banf1 Basp1 brain abundant, memrane signal protein 1 Basp1 C3 complement C3 C3 C3 C3 C4 Complement C4 C4 C4 C4 Calm2 calmodulin 2 (phosphorylase kinase, delta) Calm2 Capn5 Calpain 5 Capn5 Capn5 Cct5 chaperonin subunit 5 Cct5 Cct8 chaperonin subunit 8 Cct8 CD147 basigin CD147 CD63 CD63 CD63 CD81 CD81 CD81 CD81 CD81 CD81 CD81 CD82 CD82 CD82 CD82 CD90.2 thy1.2 CD90.2 CD98 Slc3a2 CD98 CD98 Cdc42 Cell division cycle 42 Cdc42 Cfl1 Cofilin 1 Cfl1 Cfl1 Chmp4b chromatin modifying protein 4B Chmp4b Chmp5 chromatin modifying protein 5 Chmp5 Clta clathrin, light polypeptide A Clta Cltc Clathrin Hc Cltc Cltc Cltc Cltc Clu clusterin Clu Col16a1 collagen 16a1 Col16a1 Col2 Collagen type II Col2a1 Col2 Col6 Collagen type VI alpha 3 Col6a3 Col6 CpE carboxypeptidase E CpE CpE CpE, CpH CpE CpE Cspg4 Chondroitin sulfate proteoglycan 4 Cspg4 CyCAP Cyclophilin C-associated protein CyCAP CyCAP Dnpep aspartyl aminopeptidase Dnpep Dstn destrin Dstn EDIL3 EGF-like repeat discoidin. -
The Caenorhabditis Elegans Unc-60 Gene Encodes Proteins Homologous to a Family of Actin-Binding Proteins
Mol Gen Genet (1994) 242:346-357 © Springer-Verlag 1994 The Caenorhabditis elegans unc-60 gene encodes proteins homologous to a family of actin-binding proteins Kim S. McKim*, Camela Matheson, Marco A. Marra, Marcia F. Wakarchuk, David L. Baillie Institute of Molecular Biology and Biochemistry, Department of Biological Sciences, Simon Fraser University, Burnaby, B.C. Canada V5A 1S6 Received: 10 May 1993/Accepted: 28 July 1993 Abstract. Mutations in the uric-60 gene of the nematode vertebrate Z lines, and interdigitate with the thick fila- Caenorhabditis eIegans result in paralysis. The thin fila- ments which are centrally stacked in the sarcomere. An ments of the muscle cells are severely disorganized and electron-dense material analogous to the vertebrate M not bundled with myosin into functional contractile line is also present. While there are also significant dif- units. Here we report the cloning and sequence of unc-60. ferences, the similarities to vertebrate muscle make Two unc-60 transcripts, 1.3 and 0.7 kb in size, were de- C. eleoans an attractive model system for the study of tected. The transcripts share a single exon encoding only muscle structure and function. the initial methionine, yet encode proteins with ho- Genetic analysis has identified more than 30 genes mologous sequences. The predicted protein products are involved in muscle development and function (Waterston 165 and 152 amino acids in length and their sequences 1988). Most of these genes were identified through the are 38% identical. Both proteins are homologous to a isolation of mutants exhibiting impaired movement due family of actin depolymerizing proteins identified in ver- to the dysfunction of muscle contraction (Brenner 1974). -
Downregulation of Talin-1 Expression Associates with Increased Proliferation and Migration of Vascular Smooth Muscle Cells in Ao
Wei et al. BMC Cardiovascular Disorders (2017) 17:162 DOI 10.1186/s12872-017-0588-0 RESEARCH ARTICLE Open Access Downregulation of Talin-1 expression associates with increased proliferation and migration of vascular smooth muscle cells in aortic dissection Xiaolong Wei1†, Yudong Sun1†, Yani Wu1†, Jiang Zhu1, Bin Gao1, Han Yan2, Zhiqing Zhao1*, Jian Zhou1* and Zaiping Jing1* Abstract Background: This study aimed to assessed whether Talin-1 is involved in the pathogenesis of aortic dissection via regulating vascular smooth muscle cell (VSMC) biological function. Methods: Human aortic samples were obtained from organ donors who died from nonvascular diseases as normal controls and from patients undergoing surgical repair of thoracic aortic dissection. The expression level and distribution of Talin-1 were detected using westernblot analysis and immunohistochemistry in each sample. We inhibited the expression of Talin-1 via RNA interference in VSMCs. VSMC proliferation was detected by Cell-counting Kit-8 analyses. Scratch test and flow cytometry were used to identify the migration and apoptosis ability. Antibody microarray analysis and qRT-PCR were used to detect some protein and mRNA changes which were induced by Talin-1 downregulation. Results: Talin-1 was significantly downregulated in the media of aortic dissection samples compared with controls (P < 0.05). Talin-1 knockdown significantly induced VSMC proliferation and migration in vitro. Proteins which involved in cell cycle can be regulated by downregulating Talin-1. Down regulation of Talin-1 can significanly increased the expression of anaphase-promoting complex subunit 2 (APC2) and decreased p19 alternative reading frame (p19ARF), Cullin-3, and beta actin’sexpression. -
Cytoskeletal Proteins in Neurological Disorders
cells Review Much More Than a Scaffold: Cytoskeletal Proteins in Neurological Disorders Diana C. Muñoz-Lasso 1 , Carlos Romá-Mateo 2,3,4, Federico V. Pallardó 2,3,4 and Pilar Gonzalez-Cabo 2,3,4,* 1 Department of Oncogenomics, Academic Medical Center, 1105 AZ Amsterdam, The Netherlands; [email protected] 2 Department of Physiology, Faculty of Medicine and Dentistry. University of Valencia-INCLIVA, 46010 Valencia, Spain; [email protected] (C.R.-M.); [email protected] (F.V.P.) 3 CIBER de Enfermedades Raras (CIBERER), 46010 Valencia, Spain 4 Associated Unit for Rare Diseases INCLIVA-CIPF, 46010 Valencia, Spain * Correspondence: [email protected]; Tel.: +34-963-395-036 Received: 10 December 2019; Accepted: 29 January 2020; Published: 4 February 2020 Abstract: Recent observations related to the structure of the cytoskeleton in neurons and novel cytoskeletal abnormalities involved in the pathophysiology of some neurological diseases are changing our view on the function of the cytoskeletal proteins in the nervous system. These efforts allow a better understanding of the molecular mechanisms underlying neurological diseases and allow us to see beyond our current knowledge for the development of new treatments. The neuronal cytoskeleton can be described as an organelle formed by the three-dimensional lattice of the three main families of filaments: actin filaments, microtubules, and neurofilaments. This organelle organizes well-defined structures within neurons (cell bodies and axons), which allow their proper development and function through life. Here, we will provide an overview of both the basic and novel concepts related to those cytoskeletal proteins, which are emerging as potential targets in the study of the pathophysiological mechanisms underlying neurological disorders. -
Indoxyl Sulfate and P-Cresyl Sulfate Promote Vascular Calcification and Associate with Glucose Intolerance
BASIC RESEARCH www.jasn.org Indoxyl Sulfate and p-Cresyl Sulfate Promote Vascular Calcification and Associate with Glucose Intolerance Britt Opdebeeck ,1 Stuart Maudsley,2,3 Abdelkrim Azmi,3 Annelies De Maré,1 Wout De Leger,4 Bjorn Meijers,5,6 Anja Verhulst,1 Pieter Evenepoel,5,6 Patrick C. D’Haese,1 and Ellen Neven1 1Laboratory of Pathophysiology, Department of Biomedical Sciences, 2Receptor Biology Lab, Department of Biomedical Sciences, and 3Translational Neurobiology Group, Flanders Institute of Biotechnology Center for Molecular Neurology, Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium; 4Division of Molecular Design and Synthesis, Department of Chemistry and 6Laboratory of Nephrology, Department of Immunology and Microbiology, Catholic University of Leuven, Leuven, Belgium; and 5Division of Internal Medicine, Nephrology, University Hospitals Leuven, Leuven, Belgium ABSTRACT Background Protein-bound uremic toxins indoxyl sulfate (IS) and p-cresyl sulfate (PCS) have been associ- ated with cardiovascular morbidity and mortality in patients with CKD. However, direct evidence for a role of these toxins in CKD-related vascular calcification has not been reported. Methods To study early and late vascular alterations by toxin exposure, we exposed CKD rats to vehicle, IS (150 mg/kg per day), or PCS (150 mg/kg per day) for either 4 days (short-term exposure) or 7 weeks (long-term exposure). We also performed unbiased proteomic analyses of arterial samples coupled to functional bioinformatic annotation analyses to investigate molecular signaling events associated with toxin-mediated arterial calcification. Results Long-term exposure to either toxin at serum levels similar to those experienced by patients with CKD significantly increased calcification in the aorta and peripheral arteries. -
Integrins Synergise to Induce Expression of the MRTF-A–SRF Target
© 2016. Published by The Company of Biologists Ltd | Journal of Cell Science (2016) 129, 1391-1403 doi:10.1242/jcs.177592 RESEARCH ARTICLE Integrins synergise to induce expression of the MRTF-A–SRF target gene ISG15 for promoting cancer cell invasion Michaela-Rosemarie Hermann1,*, Madis Jakobson1,*, Georgina P. Colo1,*, Emanuel Rognoni1, Maili Jakobson1, Christian Kupatt2, Guido Posern3 and Reinhard Fässler1,‡ ABSTRACT characteristic shape and initiate migration, and are to a large Integrin-mediated activation of small GTPases induces the extent triggered by the activation of Rho family GTPases and actin- polymerisation of G-actin into various actin structures and the binding proteins (Danen et al., 2002). Long-term effects of integrin release of the transcriptional co-activator MRTF from G-actin. Here signalling result from changes in gene expression, which regulate we report that pan-integrin-null fibroblasts seeded on fibronectin and numerous cellular processes including proliferation and differentiation expressing β1- and/or αV-class integrin contained different G-actin (Legate et al., 2009). Integrin-dependent regulation of gene pools, nuclear MRTF-A (also known as MKL1 or MAL) levels and expression is primarily thought to arise from cross talk with MRTF-A–SRF activities. The nuclear MRTF-A levels and activities growth factor receptors that increase the activity of mitogen- were highest in cells expressing both integrin classes, lower in cells activated protein (MAP) kinase pathways. A recent study, however, expressing β1 integrins