ISSN: 0975-8585 July – August 2017 RJPBCS 8(4) Page No
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Downloaded on 12 March 2021, Was Applied to Evaluate the Extent of Species Other Than Chia in RNA-Seq Assemblies
plants Article Proteomic Identification and Meta-Analysis in Salvia hispanica RNA-Seq de novo Assemblies Ashwil Klein 1 , Lizex H. H. Husselmann 1 , Achmat Williams 1, Liam Bell 2 , Bret Cooper 3 , Brent Ragar 4 and David L. Tabb 1,5,6,* 1 Department of Biotechnology, University of the Western Cape, Bellville 7535, South Africa; [email protected] (A.K.); [email protected] (L.H.H.H.); [email protected] (A.W.) 2 Centre for Proteomic and Genomic Research, Cape Town 7925, South Africa; [email protected] 3 USDA Agricultural Research Service, Beltsville, MD 20705, USA; [email protected] 4 Departments of Internal Medicine and Pediatrics, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02150, USA; [email protected] 5 Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town 7500, South Africa 6 Centre for Bioinformatics and Computational Biology, Stellenbosch University, Stellenbosch 7602, South Africa * Correspondence: [email protected]; Tel.: +27-82-431-2839 Abstract: While proteomics has demonstrated its value for model organisms and for organisms with mature genome sequence annotations, proteomics has been of less value in nonmodel organisms that are unaccompanied by genome sequence annotations. This project sought to determine the value of RNA-Seq experiments as a basis for establishing a set of protein sequences to represent a nonmodel organism, in this case, the pseudocereal chia. Assembling four publicly available chia RNA-Seq datasets produced transcript sequence sets with a high BUSCO completeness, though the Citation: Klein, A.; Husselmann, number of transcript sequences and Trinity “genes” varied considerably among them. -
GARDEN of the SUN - PERENNIALS Page 1
GARDEN OF THE SUN - PERENNIALS page 1 Botanical Name Common Name Section Alstroemeria aurea PERUVIAN LILLY P01 Bletilla striata 'Purple Dragon' GROUND ORCHID 'PURPLE DRAGON' P01 Cerastium tomentosum SNOW-IN-SUMMER P01 Colchicum autumnale AUTUMN CROCUS P01 Freesia 'Ballerina' FREESIA 'BALLERINA' P01 Hemerocallis DAYLILY P01 Iris (Tall Bearded)'Summer Olympics' IRIS 'SUMMER OLYMPICS' P01 Lantana camara 'Radiation'' LANTANA 'RADIATION' P01 Lychnis coronaria 'Alba' LYCHNIS 'ALBA' P01 Lychnis coronaria 'Rose' LYCHNIS 'ROSE' P01 Narcissus DAFFODIL P01 Plectranthus ecklonii PLECTRANTHUS P01 Rosa (Floribunda) 'Shockwave' ROSE 'SHOCK WAVE' P01 Salvia africana-lutea 'Beach Salvia' SALVIA 'BEACH SALVIA' P01 Salvia greggii ' Radio Red' PPAF MEADOW SAGE 'RADIO RED' PPAF P01 Salvia guaranitica 'Black and Bloom' ANISE-SENTED SAGE 'BLACK AND BLOOM' P01 Salvia leucantha 'Pink Velour' PINK MEXICAN BUSH SAGE 'PINK VELOUR P01 Salvia longispicata x farinacea 'Mystic Spires Blue' SAGE 'MYSTIC SPIRES BLUE' P01 Tradescantia virginiana Spiderwort P01 Achillea filipendulina 'Parker's Variety' FERNLEAF YARROW ' PARKER'S VARIETY' P02 Bougainvillea glabra 'Sanderiana' BOUGAINVILLEA 'SANDERIANA' P02 Coreopsis auriculata 'Nana' CORREOPSIS OR LOPED TICKSEED 'NANA' P02 Freesia 'Bi-Color' FREESIA 'BI-COLOR' P02 Freesia 'Pink Fountain' FREESIA 'PINK FOUNTAIN' P02 Freesia 'White Wonder' FREESIA 'WHITE WONDER' P02 Gazania linearis TREASURE FLOWER P02 Hemerocallis 'Fairy Tale Pink' DAYLILY ''FAIRY TALE PINK' P02 Hemerocallis 'Siloam Baby Talk' DAYLILY 'SILOAM BABY TALK' P02 -
Towards Resolving Lamiales Relationships
Schäferhoff et al. BMC Evolutionary Biology 2010, 10:352 http://www.biomedcentral.com/1471-2148/10/352 RESEARCH ARTICLE Open Access Towards resolving Lamiales relationships: insights from rapidly evolving chloroplast sequences Bastian Schäferhoff1*, Andreas Fleischmann2, Eberhard Fischer3, Dirk C Albach4, Thomas Borsch5, Günther Heubl2, Kai F Müller1 Abstract Background: In the large angiosperm order Lamiales, a diverse array of highly specialized life strategies such as carnivory, parasitism, epiphytism, and desiccation tolerance occur, and some lineages possess drastically accelerated DNA substitutional rates or miniaturized genomes. However, understanding the evolution of these phenomena in the order, and clarifying borders of and relationships among lamialean families, has been hindered by largely unresolved trees in the past. Results: Our analysis of the rapidly evolving trnK/matK, trnL-F and rps16 chloroplast regions enabled us to infer more precise phylogenetic hypotheses for the Lamiales. Relationships among the nine first-branching families in the Lamiales tree are now resolved with very strong support. Subsequent to Plocospermataceae, a clade consisting of Carlemanniaceae plus Oleaceae branches, followed by Tetrachondraceae and a newly inferred clade composed of Gesneriaceae plus Calceolariaceae, which is also supported by morphological characters. Plantaginaceae (incl. Gratioleae) and Scrophulariaceae are well separated in the backbone grade; Lamiaceae and Verbenaceae appear in distant clades, while the recently described Linderniaceae are confirmed to be monophyletic and in an isolated position. Conclusions: Confidence about deep nodes of the Lamiales tree is an important step towards understanding the evolutionary diversification of a major clade of flowering plants. The degree of resolution obtained here now provides a first opportunity to discuss the evolution of morphological and biochemical traits in Lamiales. -
Earth-Kind® Perennial Plant List
Earth-Kind® Perennial Plant Research Garden at Myers Park: McKinney, Texas Scientific Name Common Name 1 Achillea millefolium ' Moonshine' Yarrow 2 Agastache aurantiaca ' Apricot Sunrise' Hyssop or Hummingbird Mint 3 Anisacanthus quadrifidus var. wrightii Flame Acanthus 4 Aster oblongifolia Aromatic Aster 5 Baptisia australis ' Big Burly' False Indigo 6 Berlandiera lyrata Chocolate Daisy 7 Calylophus drummondianus 'Berlandiera' Texas Primrose - Compact Gold 8 Chrysactinia mexicana Damianita Daisy 9 Chrysanthemum leucanthemum Ox-eye Daisy 10 Eupatorium greggii Gregg's Mistflower Texas AgriLife Extension Service and Collin County Master Gardeners 1 Earth-Kind® Perennial Plant Research Garden at Myers Park: McKinney, Texas Scientific Name Common Name 11 Datura wrightii Angel Trumpet 12 Delosperma cooperi Ice Plant 13 Dianthus gratianopolitanus ' Firewitch' Firewitch Cheddar Pink 14 Dianthus ' First Love' First Love Dianthus 15 Echinacea purpurea ' Kim's Knee High' Purple Coneflower - Kim's Knee High 16 Echinacea purpurea ' White Swan' White Coneflower 17 Engelmannia pinnatifida Englemann Daisy, Cutleaf Daisy 18 Eupatorium purpureum Joe Pye Weed 19 Gaura lindheimeri ' Siskiyou Pink' Whirling Butterflies 'Siskiyou Pink' 20 Gaura lindheimeri 'Pink Cloud' Whirling Butterflies 'Pink Cloud' Texas AgriLife Extension Service and Collin County Master Gardeners 2 Earth-Kind® Perennial Plant Research Garden at Myers Park: McKinney, Texas Scientific Name Common Name 21 Gaura lindheimeri ' White Fountain' Whirling Butterflies 'White Fountain' 22 Hemerocallis -
Maestra En Ciencias Biológicas
UNIVERSIDAD MICHOACANA DE SAN NICOLÁS DE HIDALGO FACULTAD DE BIOLOGÍA PROGRAMA INSTITUCIONAL DE MAESTRÍA EN CIENCIAS BIOLÓGICAS ECOLOGÍA Y CONSERVACIÓN TESIS FILOGENÓMICA DE SALVIA SUBGÉNERO CALOSPHACE (LAMIACEAE) Que presenta BIOL. MARÍA DE LA LUZ PÉREZ GARCÍA Para obtener el título de MAESTRA EN CIENCIAS BIOLÓGICAS Tutor DRA. SABINA IRENE LARA CABRERA Morelia Michoacán, marzo de 2019 AGRADECIMIENTO A mi asesora de Tesis la Dra. Sabina Irene Lara Cabrera, por su apoyo y revisión constante del proyecto. A mis sinodales Dra. Gabriela Domínguez Vázquez Dr. Juan Carlos Montero Castro, por su valiosa aportación y comentarios al escrito Dr. Victor Werner Steinmann por su apoyo en todo momento y siempre darme ánimos de seguir adelante con el proyecto asi como sus cometarios del escrito y del proyecto Dr. J. Mark Porter por su apoyo y las facilidades prestadas para poder realizar la estancia en Rancho Santa Ana Botanic Garden Dr. Carlos Alonso Maya Lastra por su aportación y ayuda con los programas bioinformáticos y los comentarios y sugerencias para mejorar el escrito M.C. Lina Adonay Urrea Galeano por su amistad y apoyo en todo momento desde el inicio de la maestría A Luis A. Rojas Martínez por apoyo y amor incondicional en cada momento de este proceso y por siempre impulsarme a ser mejor en lo que hago M.C. Sandra Tobón Cornejo por su amistad incondicional en todo momento A mis compañeros de laboratorio Karina, Everardo, Diego, Pedro, Jesús y Dago por su amistad DEDICATORIA A la familia Pérez-García A mis padres: María Emma García López y Laurentino Pérez Villa por su apoyo y amor incondicional A mis hermanos: Rigoberto, Cecilia, Jorge, Celina, Lorena, Jesús Alberto e Ismael por ser más que mis hermanos mis amigos, brindarme su apoyo y amor siempre INDICE 1. -
South American Cacti in Time and Space: Studies on the Diversification of the Tribe Cereeae, with Particular Focus on Subtribe Trichocereinae (Cactaceae)
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2013 South American Cacti in time and space: studies on the diversification of the tribe Cereeae, with particular focus on subtribe Trichocereinae (Cactaceae) Lendel, Anita Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-93287 Dissertation Published Version Originally published at: Lendel, Anita. South American Cacti in time and space: studies on the diversification of the tribe Cereeae, with particular focus on subtribe Trichocereinae (Cactaceae). 2013, University of Zurich, Faculty of Science. South American Cacti in Time and Space: Studies on the Diversification of the Tribe Cereeae, with Particular Focus on Subtribe Trichocereinae (Cactaceae) _________________________________________________________________________________ Dissertation zur Erlangung der naturwissenschaftlichen Doktorwürde (Dr.sc.nat.) vorgelegt der Mathematisch-naturwissenschaftlichen Fakultät der Universität Zürich von Anita Lendel aus Kroatien Promotionskomitee: Prof. Dr. H. Peter Linder (Vorsitz) PD. Dr. Reto Nyffeler Prof. Dr. Elena Conti Zürich, 2013 Table of Contents Acknowledgments 1 Introduction 3 Chapter 1. Phylogenetics and taxonomy of the tribe Cereeae s.l., with particular focus 15 on the subtribe Trichocereinae (Cactaceae – Cactoideae) Chapter 2. Floral evolution in the South American tribe Cereeae s.l. (Cactaceae: 53 Cactoideae): Pollination syndromes in a comparative phylogenetic context Chapter 3. Contemporaneous and recent radiations of the world’s major succulent 86 plant lineages Chapter 4. Tackling the molecular dating paradox: underestimated pitfalls and best 121 strategies when fossils are scarce Outlook and Future Research 207 Curriculum Vitae 209 Summary 211 Zusammenfassung 213 Acknowledgments I really believe that no one can go through the process of doing a PhD and come out without being changed at a very profound level. -
For Cultivation in Southern Arizona
New World Salvias For Cultivation in Southern Arizona Item Type Article Authors Starr, Greg Publisher University of Arizona (Tucson, AZ) Journal Desert Plants Rights Copyright © Arizona Board of Regents. The University of Arizona. Download date 23/09/2021 12:15:59 Link to Item http://hdl.handle.net/10150/609082 Starr New World Salvias 167 Literature Review New World Salvias Salvia, with nearly 800 species, is the largest genus in the Labiatae, a family characterized by square stems; opposite leaves; a zygomorphic, sympetalous corolla; two or four For Cultivation stamens; and a superior, four -lobed ovary (Peterson, 1978). Species of Salvia vary in habit from annual, biennial, or in Southern Arizona perennial herbs to subshrubs and small to large shrubs. Leaves are simple or pinnate with toothed or pinnatisect margins. (Bailey, 1902; Bailey, 1928; Synge, 1969; Taylor, 1961) Greg Starr In subgenus Calosphace, the inflorescence is a series of 3340 W. Ruthann Rd. reduced cymes, called cymules. Each node bears two cymules which together appear to form a whorl of flowers, Tucson, AZ 85 745 variously called a verticillaster, a glomerule, or a false whorl (Peterson, 1978). The verticillasters may be arranged in terminal racemes (S. greggii, Figure 3), or axillary racemes (S. regla, Figure 6). The verticillasters may be congested along the axis (S. lavanduloides, Figure 7) or more or less evenly spaced (S. greggii, Figure 3). Each verticillaster is subtended by a pair of bracts which may be persistent, deciduous, or caducous. The bracts range from minute, green, and deciduous (S. azurea) to large, colored, Acknowledgments and persistent (S. -
Flora and Plant Coummunities of Deer Park Prairie
THE VASCULAR FLORA AND PLANT COMMUNITIES OF LAWTHER - DEER PARK PRAIRIE, HARRIS COUNTY, TEXAS, U.S.A. Jason R. Singhurst Jeffrey N. Mink Wildlife Diversity Program 176 Downsville Road Texas Parks & Wildlife Department Robinson, Texas 76706-7276, U.S.A. 4200 Smith School Road [email protected] Austin, Texas 78744, U.S.A. [email protected] [email protected] Katy Emde, Lan Shen, Don Verser Walter C. Holmes Houston Chapter of Department of Biology Native Prairie Association of Texas Baylor University 2700 Southwest Fwy. Waco, Texas 76798-7388, U.S.A. Houston, Texas 77098, U.S.A. [email protected] ABSTRACT Field studies at the Lawther - Deer Park Prairie Preserve, an area of approximately 21 ha (51 acres) of the Gulf Coast Prairies and Marshes vegetation area, have resulted in a description of the vegetation associations and an annotated checklist of the vascular flora. Six plant com- munity associations occur on the property: (1) the Upper Texas Coast Ingleside Sandy Wet Prairie; (2) Eastern Gamagrass - Switchgrass - Yellow Indiangrass Herbaceous Vegetation; (3) Gulf Cordgrass Herbaceous Vegetation; (4) Texas Gulf Coast Live Oak - Sugarberry Forest; (5) Little Bluestem - Slender Bluestem - Big Bluestem Herbaceous Vegetation, and (6) Natural Depressional Ponds. The checklist includes 407 species belonging to 247 genera and 86 families. Forty-six species are non-native. The best-represented families (with species number following) are Poaceae (84), Asteraceae (68), Cyperaceae (33), and Fabaceae (19). West Gulf Coastal Plain (eastern Texas and western Louisiana) endemics include Helenium drummondii, Liatris acidota, Oenothera lindheimeri, and Rudbeckia texana. One Texas endemic, Chloris texensis, a Species of Greater Conservation Need, is present. -
Lovers Plant
Stunning results just got easier. Introducing a great new way to feed all your outdoor plants. Osmocote® is now available in an easy-to-use bottle. Spread Osmocote® Flower & Vegetable Plant Food throughout your garden so you can enjoy vibrant flowers, lush foliage and mouthwatering vegetables. Osmocote® is formulated to feed consistently and continuously for up to four full months, plus it’s guaranteed not to burn. And if that’s not enough, now the new bottle gives you yet another reason to be an Osmocote® gardener. Looking for expert advice and answers to your gardening questions? Visit PlantersPlace.com — a fresh, new online gardening community. © 2007, Scotts-Sierra Horticultural Products Company. World rights reserved. contents Volume 86, Number 3 . May / June 2007 FEATURES DEPARTMENTS 5 NOTES FROM RIVER FARM 6 MEMBERS’ FORUM 8 NEWS FROM AHS Flower show exhibits win AHS Environmental Award, American Public Gardens Association Conference in Washington, D.C., new AHS Board members, National Children & Youth Garden Symposium in Minnesota, AHS webinar series debuts, Susannah’s Garden Essay Contest winner selected. 14 AHS PARTNERS IN PROFILE OXO International. page 34 16 AHS NEWS SPECIAL Minnesota Landscape Arboretum’s Youth Programs. 18 CLASSIC PERENNIALS UPDATED BY JO ANN GARDNER GARDENER’S NOTEBOOK Breeding breakthroughs and serendipitous discoveries have yielded 45 perennials better suited for conditions in today’s gardens. Recent honeybee colony dieoffs puzzle scientists, court orders more Federal oversight on transgenic crops, celebrating 24 THE CUTTING FIELDS Rachel Carson’s BY CHRISTINE FROEHLICH centennial, new website For Nellie Gardner, sharing the for connecting kids with joy of gardening and arranging nature, Senate designates Endangered Species Day cut flowers is all in a day’s work. -
Plant Reproducqon
Plant Reproduc/on Sexual - Selfing Gavin Douglas and Young Wha Lee Capsella rubella, selfing species (l); and Capsella grandiflora, outcrossing species (r) Sexual - Selfing chasmogamous flower cleistogamous flowers Sexual - Outcrossing selF-incompability Sexual - Outcrossing early protandry late male flowers not yet mature Female flowers recep/ve protogyny dichogamy (temporal separaon oF sexes) Sexual - Outcrossing monoecy dioecy heterostyly unisexual flowers herkogamy (spaal separaon oF sexes) Asterids - Lamiids Asterids Core asterids Lamiids Campanulids Asterids - Lamiids Asterids Lamiales Scrophulariaceae, Lamiaceae Lamiales Scrophulariaceae, Lamiaceae, Verbenaceae (verbena), Oleaceae (olive) Lamiales corolla oLen zygomorphic, bilabiate; stamens didynamous (2 long + 2 short) Lamiaceae / Labiatae Scutellaria lateriflora Monardella odora:ssima Salvia splendens skullcap mountain monardella scarlet sage Salvia dorii Monarda didyma Plectranthus scutellarioides gray-ball sage scarlet beebalm coleus Lamiaceae / Labiatae Salvia officinalis Rosmarinus officinalis Thymus vulgaris sage rosemary thyme Origanum vulgare Ocimum basilicum Mentha spicata Lavandula angusfolia oregano basil spearmint lavender Lamiaceae / Labiatae leaves opposite and decussate, stems sQuare Lamiaceae / Labiatae inflorescence: oen ver/cillate Lamiaceae / Labiatae corolla zygomorphic, oLen bilabiate Lamiaceae / Labiatae stamens didynamous (2 long + 2 short) Lamiaceae / Labiatae ovary 2-carpellate, with 4 lobes and 4 ovules Fruit: schizocarp Forming 4 nutlets “Scrophulariaceae” Penstemon -
Mealycup Sage, Salvia Farinacea
A Horticulture Information article from the Wisconsin Master Gardener website, posted 1 Aug 2016 Mealycup sage, Salvia farinacea Mealycup sage, Salvia farinacea, is native to the plains, prairies, meadows and woodland edges of Mexico, central and western Texas and New Mexico in limestone soils from 3500-6000 feet. Also commonly called mealy blue sage, mealy sage, or blue sage, this short lived herbaceous perennial in the mint family (Lamiaceae) is hardy in zones 7-10. Because it is fast-growing and bears multiple spikes of blue fl owers in its fi rst year (fl owering in less than four months from seed), it is frequently grown as an annual where it will not survive the winter. (Despite living on the edge of zone 4, plants have occasionally survived a mild winter in my garden along a block wall with a southern exposure, but take a long time to get going the following year. Other anecdotal reports indicate it will survive further north than zone 7 in dry soil.) Both the scientifi c Mealycup sage is a perennial grown as an and common annual in the Midwest. names refer to the powdery white felted hairs on the fl ower calyx and upper stems; this extremely fi ne white pubescence is referred to as farinose (“mealy” means covered with powdery meal; farina is Latin for fl our or meal). This upright to sprawling plant can form a mound of foliage up to 4 feet tall and wide. The long (to 3”), drooping, lance- The name of this plant comes from the shaped, nearly-glossy leaves grow in dense clusters (opposite dense, fi ne hairs on the fl ower calyx and to whorled) from the square stems. -
The Botanical, Chemical and Ethnobotanical Diversity of Southern African Lamiaceae
molecules Review The Botanical, Chemical and Ethnobotanical Diversity of Southern African Lamiaceae Ryan D. Rattray and Ben-Erik Van Wyk * Department of Botany and Plant Biotechnology, University of Johannesburg, Auckland Park, P.O. Box 524, Johannesburg 2006, South Africa; [email protected] * Correspondence: [email protected]; Tel.: +27-11-559-2412 Abstract: The Lamiaceae is undoubtedly an important plant family, having a rich history of use that spans the globe with many species being used in folk medicine and modern industries alike. Their ability to produce aromatic volatile oils has made them valuable sources of materials in the cosmetic, culinary, and pharmaceutical industries. A thorough account of the taxonomic diversity, chemistry and ethnobotany is lacking for southern African Lamiaceae, which feature some of the region’s most notable medicinal and edible plant species. We provide a comprehensive insight into the Lamiaceae flora of southern Africa, comprising 297 species in 42 genera, 105 of which are endemic to the subcontinent. We further explore the medicinal and traditional uses, where all genera with documented uses are covered for the region. A broad review of the chemistry of southern African Lamiaceae is presented, noting that only 101 species (34%) have been investigated chemically (either their volatile oils or phytochemical characterization of secondary metabolites), thus presenting many and varied opportunities for further studies. The main aim of our study was therefore to present an up-to-date account of the botany, chemistry and traditional uses of the family in southern Africa, and Citation: Rattray, R.D.; Van Wyk, to identify obvious knowledge gaps.