Module I Oxidation Reactions
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Chapter 13 Reactions of Arenes Electrophilic Aromatic Substitution
CH. 13 Chapter 13 Reactions of Arenes Electrophilic Aromatic Substitution Electrophiles add to aromatic rings in a fashion somewhat similar to the addition of electrophiles to alkenes. Recall: R3 R4 E Y E Y C C + E Y R1 C C R4 R1 C C R4 − R2 R1 δ+ δ R2 R3 R2 R3 In aromatic rings, however, we see substitution of one of the benzene ring hydrogens for an electrophile. H E + E Y + Y H δ+ δ− The mechanism is the same regardless of the electrophile. It involves two steps: (1) Addition of the electrophile to form a high-energy carbocation. (2) Elimination of the proton to restore the aromatic ring system. H H H H slow E Y + Y step 1 + E δ+ δ− high energy arenium ion H H step 2 fast E E + Y + Y H The first step is the slow step since the aromaticity of the benzene ring system is destroyed on formation of the arenium ion intermediate. This is a high energy species but it is stabilized by resonance with the remaining two double bonds. The second step is very fast since it restores the aromatic stabilization. 1 CH. 13 H H H H H H E E E There are five electrophilic aromatic substitution reactions that we will study. (1) Nitration H NO2 H2SO4 + HNO3 (2) Sulfonation H SO3H + H2SO4 (3) Halogenation with bromine or chlorine H X FeX3 X = Br, Cl + X2 (4) Friedel-Crafts Alkylation H R AlX + RX 3 (5) Friedel-Crafts Acylation O H O C AlX3 R + Cl C R 2 CH. -
Fatty Acid Biosynthesis
BI/CH 422/622 ANABOLISM OUTLINE: Photosynthesis Carbon Assimilation – Calvin Cycle Carbohydrate Biosynthesis in Animals Gluconeogenesis Glycogen Synthesis Pentose-Phosphate Pathway Regulation of Carbohydrate Metabolism Anaplerotic reactions Biosynthesis of Fatty Acids and Lipids Fatty Acids contrasts Diversification of fatty acids location & transport Eicosanoids Synthesis Prostaglandins and Thromboxane acetyl-CoA carboxylase Triacylglycerides fatty acid synthase ACP priming Membrane lipids 4 steps Glycerophospholipids Control of fatty acid metabolism Sphingolipids Isoprene lipids: Cholesterol ANABOLISM II: Biosynthesis of Fatty Acids & Lipids 1 ANABOLISM II: Biosynthesis of Fatty Acids & Lipids 1. Biosynthesis of fatty acids 2. Regulation of fatty acid degradation and synthesis 3. Assembly of fatty acids into triacylglycerol and phospholipids 4. Metabolism of isoprenes a. Ketone bodies and Isoprene biosynthesis b. Isoprene polymerization i. Cholesterol ii. Steroids & other molecules iii. Regulation iv. Role of cholesterol in human disease ANABOLISM II: Biosynthesis of Fatty Acids & Lipids Lipid Fat Biosynthesis Catabolism Fatty Acid Fatty Acid Degradation Synthesis Ketone body Isoprene Utilization Biosynthesis 2 Catabolism Fatty Acid Biosynthesis Anabolism • Contrast with Sugars – Lipids have have hydro-carbons not carbo-hydrates – more reduced=more energy – Long-term storage vs short-term storage – Lipids are essential for structure in ALL organisms: membrane phospholipids • Catabolism of fatty acids –produces acetyl-CoA –produces reducing -
Alcohol Oxidation
Alcohol oxidation Alcohol oxidation is an important organic reaction. Primary alcohols (R-CH2-OH) can be oxidized either Mechanism of oxidation of primary alcohols to carboxylic acids via aldehydes and The indirect oxidation of aldehyde hydrates primary alcohols to carboxylic acids normally proceeds via the corresponding aldehyde, which is transformed via an aldehyde hydrate (R- CH(OH)2) by reaction with water. The oxidation of a primary alcohol at the aldehyde level is possible by performing the reaction in absence of water, so that no aldehyde hydrate can be formed. Contents Oxidation to aldehydes Oxidation to ketones Oxidation to carboxylic acids Diol oxidation References Oxidation to aldehydes Oxidation of alcohols to aldehydes is partial oxidation; aldehydes are further oxidized to carboxylic acids. Conditions required for making aldehydes are heat and distillation. In aldehyde formation, the temperature of the reaction should be kept above the boiling point of the aldehyde and below the boiling point of the alcohol. Reagents useful for the transformation of primary alcohols to aldehydes are normally also suitable for the oxidation of secondary alcohols to ketones. These include: Oxidation of alcohols to aldehydes and ketones Chromium-based reagents, such as Collins reagent (CrO3·Py2), PDC or PCC. Sulfonium species known as "activated DMSO" which can result from reaction of DMSO with electrophiles, such as oxalyl chloride (Swern oxidation), a carbodiimide (Pfitzner-Moffatt oxidation) or the complex SO3·Py (Parikh-Doering oxidation). Hypervalent iodine compounds, such as Dess-Martin periodinane or 2-Iodoxybenzoic acid. Catalytic TPAP in presence of excess of NMO (Ley oxidation). Catalytic TEMPO in presence of excess bleach (NaOCl) (Oxoammonium-catalyzed oxidation). -
Ganic Compounds
6-1 SECTION 6 NOMENCLATURE AND STRUCTURE OF ORGANIC COMPOUNDS Many organic compounds have common names which have arisen historically, or have been given to them when the compound has been isolated from a natural product or first synthesised. As there are so many organic compounds chemists have developed rules for naming a compound systematically, so that it structure can be deduced from its name. This section introduces this systematic nomenclature, and the ways the structure of organic compounds can be depicted more simply than by full Lewis structures. The language is based on Latin, Greek and German in addition to English, so a classical education is beneficial for chemists! Greek and Latin prefixes play an important role in nomenclature: Greek Latin ½ hemi semi 1 mono uni 1½ sesqui 2 di bi 3 tri ter 4 tetra quadri 5 penta quinque 6 hexa sexi 7 hepta septi 8 octa octo 9 ennea nona 10 deca deci Organic compounds: Compounds containing the element carbon [e.g. methane, butanol]. (CO, CO2 and carbonates are classified as inorganic.) See page 1-4. Special characteristics of many organic compounds are chains or rings of carbon atoms bonded together, which provides the basis for naming, and the presence of many carbon- hydrogen bonds. The valency of carbon in organic compounds is 4. Hydrocarbons: Compounds containing only the elements C and H. Straight chain hydrocarbons are named according to the number of carbon atoms: CH4, methane; C2H6 or H3C-CH3, ethane; C3H8 or H3C-CH2-CH3, propane; C4H10 or H3C-CH2- CH2-CH3, butane; C5H12 or CH3CH2CH2CH2CH3, pentane; C6H14 or CH3(CH2)4CH3, hexane; C7H16, heptane; C8H18, octane; C9H20, nonane; C10H22, CH3(CH2)8CH3, decane. -
Comparative Responses of Rice (Oryza Sativa) Straw to Urea Supplementation and Urea Treatment
COMPARATIVE RESPONSES OF RICE (ORYZA SATIVA) STRAW TO UREA SUPPLEMENTATION AND UREA TREATMENT M. N. A. Kumar1, K. Sundareshan, E. G. Jagannath S. R. Sampath and P. T. Doyle2 Southern Regional Station, National Dairy Research Institute, Bangalore - 560030, India Summary Twenty five 75% Holstein Friesian cross bred bullocks fed rice straw (Oryza saliva) of long form, were fed with the following five treatments. 1. Rice straw, untreated (RS) 2. RS + water (1:1), stored for 24 hours (WRS) 3. RS (100 kg) + urea solution (4 kg urea/100 litre water) and dried (USRS) 4. RS (100 kg) + urea solution (as in 3) stored in wet condition for 24 hours (UWRS) 5. RS (100 kg) + urea solution (as in 3) stored in pit for 21 days (UTRS). Potential digestibility of treatments of RS was evaluated by monitoring (in vitro) Simulating Rumen like Fermentation (SRLF). The results indicated that Dry Matter Intake (DMI), digestibility of nutrients, N utilization were of the order UTRS > UWRS > USRS > WRS and RS (p < 0.05 to P < 0.01). SRLF index was high (255.84) for UTRS and least (145.58) for USRS. It was interm ediary (199.66) for UWRS. The acetyl content (AC) of UTRS with higher hemicellulose (HCE) dig estibility (80.8%) was low compared to UWRS, USRS, RS and WRS. The acetate content was of the order UTRS < UWRS < USRS < WRS and RS thereby indicating that reduction in acetyl con tent was an index of positive response of urea-treatment of RS. In addition, the ratio of HCE/AC in faeces of UTRS was 0.87 as against the ratios (2.26-2.48) observed in other treatments recording reduction jn AC due to urea-treatinent. -
Molecular Structure of Wlbb, a Bacterial N-Acetyltransferase Involved in the Biosynthesis †,‡ of 2,3-Diacetamido-2,3-Dideoxy-D-Mannuronic Acid James B
4644 Biochemistry 2010, 49, 4644–4653 DOI: 10.1021/bi1005738 Molecular Structure of WlbB, a Bacterial N-Acetyltransferase Involved in the Biosynthesis †,‡ of 2,3-Diacetamido-2,3-dideoxy-D-mannuronic Acid James B. Thoden and Hazel M. Holden* Department of Biochemistry, University of Wisconsin, Madison, Wisconsin 53706 Received April 14, 2010; Revised Manuscript Received April 29, 2010 ABSTRACT: The pathogenic bacteria Pseudomonas aeruginosa and Bordetella pertussis contain in their outer membranes the rare sugar 2,3-diacetamido-2,3-dideoxy-D-mannuronic acid. Five enzymes are required for the biosynthesis of this sugar starting from UDP-N-acetylglucosamine. One of these, referred to as WlbB, is an N-acetyltransferase that converts UDP-2-acetamido-3-amino-2,3-dideoxy-D-glucuronic acid (UDP- GlcNAc3NA) to UDP-2,3-diacetamido-2,3-dideoxy-D-glucuronic acid (UDP-GlcNAc3NAcA). Here we report the three-dimensional structure of WlbB from Bordetella petrii. For this analysis, two ternary structures were determined to 1.43 A˚resolution: one in which the protein was complexed with acetyl-CoA and UDP and the second in which the protein contained bound CoA and UDP-GlcNAc3NA. WlbB adopts a trimeric quaternary structure and belongs to the LβH superfamily of N-acyltransferases. Each subunit contains 27 β-strands, 23 of which form the canonical left-handed β-helix. There are only two hydrogen bonds that occur between the protein and the GlcNAc3NA moiety, one between Oδ1 of Asn 84 and the sugar C-30 amino group and the second between the backbone amide group of Arg 94 and the sugar C-50 carboxylate. -
215-216 HH W12-Notes-Ch 15
Chem 215 F12 Notes Notes – Dr. Masato Koreeda - Page 1 of 17. Date: October 5, 2012 Chapter 15: Carboxylic Acids and Their Derivatives and 21.3 B, C/21.5 A “Acyl-Transfer Reactions” I. Introduction Examples: note: R could be "H" R Z R O H R O R' ester O carboxylic acid O O an acyl group bonded to R X R S acid halide* R' an electronegative atom (Z) thioester O X = halogen O R' R, R', R": alkyl, alkenyl, alkynyl, R O R' R N or aryl group R" amide O O O acid anhydride one of or both of R' and R" * acid halides could be "H" R F R Cl R Br R I O O O O acid fluoride acid chloride acid bromide acid iodide R Z sp2 hybridized; trigonal planar making it relatively "uncrowded" O The electronegative O atom polarizes the C=O group, making the C=O carbon "electrophilic." Resonance contribution by Z δ * R Z R Z R Z R Z C C C C O O O δ O hybrid structure The basicity and size of Z determine how much this resonance structure contributes to the hybrid. * The more basic Z is, the more it donates its electron pair, and the more resonance structure * contributes to the hybrid. similar basicity O R' Cl OH OR' NR'R" Trends in basicity: O weakest increasing basiciy strongest base base Check the pKa values of the conjugate acids of these bases. Chem 215 F12 Notes Notes –Dr. Masato Koreeda - Page 2 of 17. -
Intramolecular Ene Reactions of Functionalised Nitroso Compounds
INTRAMOLECULAR ENE REACTIONS OF FUNCTIONALISED NITROSO COMPOUNDS A Thesis Presented by Sandra Luengo Arratta In Partial Fulfilment of the Requirements for the Award of the Degree of DOCTOR OF PHILOSOPHY OF UNIVERSITY COLLEGE LONDON Christopher Ingold Laboratories Department of Chemistry University College London 20 Gordon Street London WC1H 0AJ July 2010 DECLARATION I Sandra Luengo Arratta, confirm that the work presented in this thesis is my own. Where work has been derived from other sources, I confirm that this has been indicated in the thesis. ABSTRACT This thesis concerns the generation of geminally functionalised nitroso compounds and their subsequent use in intramolecular ene reactions of types I and II, in order to generate hydroxylamine derivatives which can evolve to the corresponding nitrones. The product nitrones can then be trapped in the inter- or intramolecular mode by a variety of reactions, including 1,3-dipolar cycloadditions, thereby leading to diversity oriented synthesis. The first section comprises the chemistry of the nitroso group with a brief discussion of the current methods for their generation together with the scope and limitations of these methods for carrying out nitroso ene reactions, with different examples of its potential as a powerful synthetic method to generate target drugs. The second chapter describes the results of the research programme and opens with the development of methods for the generation of functionalised nitroso compounds from different precursors including oximes and nitro compounds, using a range of reactants and conditions. The application of these methods in intramolecular nitroso ene reactions is then discussed. Chapter three presents the conclusions which have been drawn from the work presented in chapter two, and provides suggestions for possible directions of this research in the future. -
Appendix I: Named Reactions Single-Bond Forming Reactions Co
Appendix I: Named Reactions 235 / 335 432 / 533 synthesis / / synthesis Covered in Covered Featured in problem set problem Single-bond forming reactions Grignard reaction various Radical couplings hirstutene Conjugate addition / Michael reaction strychnine Stork enamine additions Aldol-type reactions (incl. Mukaiyama aldol) various (aldol / Claisen / Knoevenagel / Mannich / Henry etc.) Asymmetric aldol reactions: Evans / Carreira etc. saframycin A Organocatalytic asymmetric aldol saframycin A Pseudoephedrine glycinamide alkylation saframycin A Prins reaction Prins-pinacol reaction problem set # 2 Morita-Baylis-Hillman reaction McMurry condensation Gabriel synthesis problem set #3 Double-bond forming reactions Wittig reaction prostaglandin Horner-Wadsworth-Emmons reaction prostaglandin Still-Gennari olefination general discussion Julia olefination and heteroaryl variants within the Corey-Winter olefination prostaglandin Peterson olefination synthesis Barton extrusion reaction Tebbe olefination / other methylene-forming reactions tetrodotoxin hirstutene / Selenoxide elimination tetrodotoxin Burgess dehydration problem set # 3 Electrocyclic reactions and related transformations Diels-Alder reaction problem set # 1 Asymmetric Diels-Alder reaction prostaglandin Ene reaction problem set # 3 1,3-dipolar cycloadditions various [2,3] sigmatropic rearrangement various Cope rearrangement periplanone Claisen rearrangement hirstutene Oxidations – Also See Handout # 1 Swern-type oxidations (Swern / Moffatt / Parikh-Doering etc. N1999A2 Jones oxidation -
Steam Cracking: Chemical Engineering
Steam Cracking: Kinetics and Feed Characterisation João Pedro Vilhena de Freitas Moreira Thesis to obtain the Master of Science Degree in Chemical Engineering Supervisors: Professor Doctor Henrique Aníbal Santos de Matos Doctor Štepánˇ Špatenka Examination Committee Chairperson: Professor Doctor Carlos Manuel Faria de Barros Henriques Supervisor: Professor Doctor Henrique Aníbal Santos de Matos Member of the Committee: Specialist Engineer André Alexandre Bravo Ferreira Vilelas November 2015 ii The roots of education are bitter, but the fruit is sweet. – Aristotle All I am I owe to my mother. – George Washington iii iv Acknowledgments To begin with, my deepest thanks to Professor Carla Pinheiro, Professor Henrique Matos and Pro- fessor Costas Pantelides for allowing me to take this internship at Process Systems Enterprise Ltd., London, a seven-month truly worthy experience for both my professional and personal life which I will certainly never forget. I would also like to thank my PSE and IST supervisors, who help me to go through this final journey as a Chemical Engineering student. To Stˇ epˇ an´ and Sreekumar from PSE, thank you so much for your patience, for helping and encouraging me to always keep a positive attitude, even when harder problems arose. To Prof. Henrique who always showed availability to answer my questions and to meet in person whenever possible. Gostaria tambem´ de agradecer aos meus colegas de casa e de curso Andre,´ Frederico, Joana e Miguel, com quem partilhei casa. Foi uma experienciaˆ inesquec´ıvel que atravessamos´ juntos e cer- tamente que a vossa presenc¸a diaria´ apos´ cada dia de trabalho ajudou imenso a aliviar as saudades de casa. -
Hydrocarbons Thermal Cracking Selectivity Depending on Their Structure and Cracking Parameters
Master in Chemical Engineering Hydrocarbons Thermal Cracking Selectivity Depending on Their Structure and Cracking Parameters Thesis of the Master’s Degree Development Project in Foreign Environment Cláudia Sofia Martins Angeira Erasmus coordinator: Eng. Miguel Madeira Examiner in FEUP: Eng. Fernando Martins Supervisor in ICT: Doc. Ing Petr Zámostný July 2008 Acknowledgements I would like to thank Doc. Ing. Petr Zámostný for the opportunity to hold a master's thesis in this project, the orientation, the support given during the laboratory work and suggestions for improvement through the work. i Hydrocarbons Thermal Cracking Selectivity Depending on Their Structure and Cracking Parameters Abstract This research deals with the study of hydrocarbon thermal cracking with the aim of producing ethylene, one of the most important raw materials in Chemical Industry. The main objective was the study of cracking reactions of hydrocarbons by means of measuring the selectivity of hydrocarbons primary cracking and evaluating the relationship between the structure and the behavior. This project constitutes one part of a bigger project involving the study of more than 30 hydrocarbons with broad structure variability. The work made in this particular project was focused on the study of the double bond position effect in linear unsaturated hydrocarbons. Laboratory experiments were carried out in the Laboratory of Gas and Pyrolysis Chromatography at the Department of Organic Technology, Institute of Chemical Technology, Prague, using for all experiments the same apparatus, Pyrolysis Gas Chromatograph, to increase the reliability and feasibility of results obtained. Linear octenes with different double bond position in hydrocarbon chain were used as model compounds. In order to achieve these goals, the primary cracking reactions were studied by the method of primary selectivities. -
Metal Catalyzed Outer Sphere Alkylations of Unactivated Olefins and Alkynes
Metal Catalyzed Outer Sphere Alkylations of Unactivated Olefins and Alkynes Stephen Goble Organic Super-Group Meeting Literature Presentation October 6, 2004 1 Outline I. Background • Introduction to Carbometallation • “Inner Sphere” vs. “Outer Sphere” • Review of Seminal Work II. Catalytic Palladium Systems III. Catalytic Platinum Systems IV. Catalytic Gold Systems 2 I. Background: Carbometallation is the formal addition of a metal and a carbon atom across a double bond. • Cis addition would involve olefin insertion in to an σ-alkyl-metal species. This is an “Inner Coordination Sphere” process. cis addition [M] [M] R olefin insertion R • The alkyl-metal species could arise from: 1. Oxidative addition of the metal to an electrophile. 2. Transmetallation of a nucleophile to the metal. 3. Direct nucleophilic attack on the palladium. • Trans addition would involve an “Outer Coordination Sphere” nucleophilic attack on the metal-olefin coordination complex. trans addition [M] [M] R- R 3 First Example: Carbopalladation of an Olefin Tsuji, J. and Takahashi, H. J. Am. Chem. Soc. 1965. 87(14), 3275-3276. [Pd] O O RO2C CO R PdCl2 RO OR 2 Na2CO3 [Pd] Cl • Amino and Oxo-palladations (i.e. Wacker Process) were previously known and have since been much more widely studied. • No distinction between cis and trans nucleophilic addition made. 4 Carbopalladation on Styrene: Different Modes of Attack Proposed different modes of attack based on different observed products with MeLi vs. Na-Malonate: Murahashi, S. et. al. J. Org. Chem. 1977. 42 (17), 2870-2874. Nucleophilic Attack on Pd Olefin Insertion B-Hydride Elimination CH3Li [Pd] [Pd] CH3 PdX2 CH3 [Pd]-H Inner Sphere Mechanism Palladium Coordination Nucleophilic Attack B-hydride elimination CO R CO2R 2 NaCH(CO2R) CO R [Pd] CO2R 2 PdX2 [Pd] [Pd]-H • Outer Sphere attack usually occurs at the more substituted carbon - more stabilization of + + charge (In intermolecular processes).