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Comparative Osteology and Evolution of the Lungless Salamanders, Family Plethodontidae David B
COMPARATIVE OSTEOLOGY AND EVOLUTION OF THE LUNGLESS SALAMANDERS, FAMILY PLETHODONTIDAE DAVID B. WAKE1 ABSTRACT: Lungless salamanders of the family Plethodontidae comprise the largest and most diverse group of tailed amphibians. An evolutionary morphological approach has been employed to elucidate evolutionary rela tionships, patterns and trends within the family. Comparative osteology has been emphasized and skeletons of all twenty-three genera and three-fourths of the one hundred eighty-three species have been studied. A detailed osteological analysis includes consideration of the evolution of each element as well as the functional unit of which it is a part. Functional and developmental aspects are stressed. A new classification is suggested, based on osteological and other char acters. The subfamily Desmognathinae includes the genera Desmognathus, Leurognathus, and Phaeognathus. Members of the subfamily Plethodontinae are placed in three tribes. The tribe Hemidactyliini includes the genera Gyri nophilus, Pseudotriton, Stereochilus, Eurycea, Typhlomolge, and Hemidac tylium. The genera Plethodon, Aneides, and Ensatina comprise the tribe Pleth odontini. The highly diversified tribe Bolitoglossini includes three super genera. The supergenera Hydromantes and Batrachoseps include the nominal genera only. The supergenus Bolitoglossa includes Bolitoglossa, Oedipina, Pseudoeurycea, Chiropterotriton, Parvimolge, Lineatriton, and Thorius. Manculus is considered to be congeneric with Eurycea, and Magnadig ita is congeneric with Bolitoglossa. Two species are assigned to Typhlomolge, which is recognized as a genus distinct from Eurycea. No. new information is available concerning Haptoglossa. Recognition of a family Desmognathidae is rejected. All genera are defined and suprageneric groupings are defined and char acterized. Range maps are presented for all genera. Relationships of all genera are discussed. -
Synchrotron Microtomography Applied to the Volumetric Analysis of Internal Structures of Thoropa Miliaris Tadpoles G
www.nature.com/scientificreports OPEN Synchrotron microtomography applied to the volumetric analysis of internal structures of Thoropa miliaris tadpoles G. Fidalgo1*, K. Paiva1, G. Mendes1, R. Barcellos1, G. Colaço2, G. Sena1, A. Pickler1, C. L. Mota1, G. Tromba3, L. P. Nogueira4, D. Braz5, H. R. Silva2, M. V. Colaço1 & R. C. Barroso1 Amphibians are models for studying applied ecological issues such as habitat loss, pollution, disease, and global climate change due to their sensitivity and vulnerability to changes in the environment. Developmental series of amphibians are informative about their biology, and X-ray based 3D reconstruction holds promise for quantifying morphological changes during growth—some with a direct impact on the possibility of an experimental investigation on several of the ecological topics listed above. However, 3D resolution and discrimination of their soft tissues have been difcult with traditional X-ray computed tomography, without time-consuming contrast staining. Tomographic data were initially performed (pre-processing and reconstruction) using the open- source software tool SYRMEP Tomo Project. Data processing and analysis of the reconstructed tomography volumes were conducted using the segmentation semi-automatic settings of the software Avizo Fire 8, which provide information about each investigated tissues, organs or bone elements. Hence, volumetric analyses were carried out to quantify the development of structures in diferent tadpole developmental stages. Our work shows that synchrotron X-ray microtomography using phase-contrast mode resolves the edges of the internal tissues (as well as overall tadpole morphology), facilitating the segmentation of the investigated tissues. Reconstruction algorithms and segmentation software played an important role in the qualitative and quantitative analysis of each target structure of the Thoropa miliaris tadpole at diferent stages of development, providing information on volume, shape and length. -
I Online Supplementary Data – Sexual Size Dimorphism in Salamanders
Online Supplementary data – Sexual size dimorphism in salamanders Supplementary data S1. Species data used in this study and references list. Males Females SSD Significant test Ref Species n SVL±SD n SVL±SD Andrias davidianus 2 532.5 8 383.0 -0.280 12 Cryptobranchus alleganiensis 53 277.4±5.2 52 300.9±3.4 0.084 Yes 61 Batrachuperus karlschmidti 10 80.0 10 84.8 0.060 26 Batrachuperus londongensis 20 98.6 10 96.7 -0.019 12 Batrachuperus pinchonii 5 69.6 5 74.6 0.070 26 Batrachuperus taibaiensis 11 92.9±12.1 9 102.1±7.1 0.099 Yes 27 Batrachuperus tibetanus 10 94.5 10 92.8 -0.017 12 Batrachuperus yenyuadensis 10 82.8 10 74.8 -0.096 26 Hynobius abei 24 57.8±2.1 34 55.0±1.2 -0.048 Yes 92 Hynobius amakusaensis 22 75.4±4.8 12 76.5±3.6 0.014 No 93 Hynobius arisanensis 72 54.3±4.8 40 55.2±4.8 0.016 No 94 Hynobius boulengeri 37 83.0±5.4 15 91.5±3.8 0.102 Yes 95 Hynobius formosanus 15 53.0±4.4 8 52.4±3.9 -0.011 No 94 Hynobius fuca 4 50.9±2.8 3 52.8±2.0 0.037 No 94 Hynobius glacialis 12 63.1±4.7 11 58.9±5.2 -0.066 No 94 Hynobius hidamontanus 39 47.7±1.0 15 51.3±1.2 0.075 Yes 96 Hynobius katoi 12 58.4±3.3 10 62.7±1.6 0.073 Yes 97 Hynobius kimurae 20 63.0±1.5 15 72.7±2.0 0.153 Yes 98 Hynobius leechii 70 61.6±4.5 18 66.5±5.9 0.079 Yes 99 Hynobius lichenatus 37 58.5±1.9 2 53.8 -0.080 100 Hynobius maoershanensis 4 86.1 2 80.1 -0.069 101 Hynobius naevius 72.1 76.7 0.063 102 Hynobius nebulosus 14 48.3±2.9 12 50.4±2.1 0.043 Yes 96 Hynobius osumiensis 9 68.4±3.1 15 70.2±3.0 0.026 No 103 Hynobius quelpaertensis 41 52.5±3.8 4 61.3±4.1 0.167 Yes 104 Hynobius -
A General Scenario of Hox Gene Inventory Variation Among Major Sarcopterygian Lineages Dan Liang1†, Riga Wu1†, Jie Geng1, Chaolin Wang2, Peng Zhang1*
Liang et al. BMC Evolutionary Biology 2011, 11:25 http://www.biomedcentral.com/1471-2148/11/25 RESEARCHARTICLE Open Access A general scenario of Hox gene inventory variation among major sarcopterygian lineages Dan Liang1†, Riga Wu1†, Jie Geng1, Chaolin Wang2, Peng Zhang1* Abstract Background: Hox genes are known to play a key role in shaping the body plan of metazoans. Evolutionary dynamics of these genes is therefore essential in explaining patterns of evolutionary diversity. Among extant sarcopterygians comprising both lobe-finned fishes and tetrapods, our knowledge of the Hox genes and clusters has largely been restricted in several model organisms such as frogs, birds and mammals. Some evolutionary gaps still exist, especially for those groups with derived body morphology or occupying key positions on the tree of life, hindering our understanding of how Hox gene inventory varied along the sarcopterygian lineage. Results: We determined the Hox gene inventory for six sarcopterygian groups: lungfishes, caecilians, salamanders, snakes, turtles and crocodiles by comprehensive PCR survey and genome walking. Variable Hox genes in each of the six sarcopterygian group representatives, compared to the human Hox gene inventory, were further validated for their presence/absence by PCR survey in a number of related species representing a broad evolutionary coverage of the group. Turtles, crocodiles, birds and placental mammals possess the same 39 Hox genes. HoxD12 is absent in snakes, amphibians and probably lungfishes. HoxB13 is lost in frogs and caecilians. Lobe-finned fishes, amphibians and squamate reptiles possess HoxC3. HoxC1 is only present in caecilians and lobe-finned fishes. Similar to coelacanths, lungfishes also possess HoxA14, which is only found in lobe-finned fishes to date. -
Contributions to Zoology, 72 (4) 195-209 (2003)
Contributions to Zoology, 72 (4) 195-209 (2003) SPB Academic Publishing bv, The Hague Variation in number of trunk vertebrae and in of costal in count grooves salamanders of the family Hynobiidae S.N. Litvinchuk¹ & L.J. Borkin² Institute Russian 194064 St. 1 of Cytology, Academy of Sciences, Tikhoretsky pr. 4, Petersburg, Russia, e- 2 mail: [email protected]; Zoological Institute, Russian Academy of Sciences, Universitetskaya nab. 1, 199034 St. Petersburg, Russia, e-mail: [email protected] Keywords: Hynobiidae, trunk vertebrae, costal grooves Abstract Introduction Ten from five of the Hynobiidae were modem tailed species genera family Among amphibians, the family Hyno- studied. The number of trunk vertebrae varied between 14 and biidae (about 40 species), distributed predominantly and the of costal from 10 15. Both 21, count grooves ranged to in temperate Asia, is an early diverged branch, which the within-species variation and the within-population varia- retains characters Duellman tion the values of many primitive (e.g., were recorded in some species. In both kinds the coefficient of low. Salamandrella & Larson Based variation were quite In Trueb, 1986; & Dimmick, 1993). the south-eastern differed from keyserlingii, samples markedly on recent studies (Fei & Ye, 2000a; Fu et al., 2001), remaining ones. the the genus Onychodactylus Among hynobiids, ten of the approximately genera hynobiids could number (both species) and Batrachuperus mustersi have higher be The genus is the richest ofvertebrae in the anterior oftrunk and recognized. Hynobius part (5 4, respectively, one and consists of about 22 which versus 3), and, thus, demonstrated a distinct position. The rela- species, may tion between the number of trunk vertebrae and the count of be arranged in three subgenera (Matsui et al., 1992; costal studied. -
Synergies Between World Heritage Sites and Key Biodiversity Areas
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/270584153 Synergies between World Heritage Sites and Key Biodiversity Areas Article · January 2010 CITATIONS READS 3 104 11 authors, including: Russell A Mittermeier Bastian Bertzky Conservation International European Commission 227 PUBLICATIONS 31,277 CITATIONS 85 PUBLICATIONS 4,043 CITATIONS SEE PROFILE SEE PROFILE Thomas Brooks Naamal De Silva International Union for Conservation of Nature George Washington University 248 PUBLICATIONS 22,669 CITATIONS 24 PUBLICATIONS 1,492 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Research supporting the IUCN Red List of Ecosystems View project BIOPAMA.org (Biodiversity and Protected Areas Management Programme) View project All content following this page was uploaded by Bastian Bertzky on 09 January 2015. The user has requested enhancement of the downloaded file. In Focus World Heritage sites and Key Biodiversity Areas Synergies between World Heritage sites and Key Biodiversity Areas Co-authors: Matthew N. Foster1, Russell A. Mittermeier1, Tim Badman2, Charles Besancon3, Bastian Bomhard3, Thomas M. Brooks4,5,6, Naamal De Silva1, Lincoln Fishpool7, Michael Parr8, Elizabeth Radford9, Will Turner1 The authors would also like to thank Kellee Koenig1, Josephine M. Langley2, Paul Matiku10, Earnest Mwongela10, Conrad Savy1, and Beth Newman9 for their contribution. International organizations that are seriously concerned with -
FROGLOG Newsletter of the Declining Amphibian Populations Task Force
Agalychnis callidryas by Tim Halliday ISSN 1026-0269 FROGLOG Newsletter of the Declining Amphibian Populations Task Force April 2005, Number 68 or appeals are ongoing or likely to be post-fire flooding on amphibian The DAPTF submitted concerning the listing or habitats in southern California; and the California / critical habitat designation for 4 other role of climate change in population Nevada Working amphibians: California red-legged declines of the foothill yellow-legged Group Annual frog (Rana aurora draytonii), mountain frog. Meeting yellow-legged frog (R. muscosa), relict C. Protection and Recovery By David Bradford, Working Group leopard frog (R. onca), and Siskiyou Efforts. Presentations by the Chair mountain salamander (Plethodon California Department of Fish and th The 13 annual meeting of the stormi). The US Environmental Game (CDFG) and National Park working group was held at the Protection Agency (EPA) was sued for Service showed remarkable recovery University of California, Berkeley, on not consulting with FWS about of populations of the mountain yellow- January 13-14, 2005. Over 150 potential impacts of pesticides on the legged frog following removal of individuals attended, representing (in threatened red-legged frog. introduced fish. CDFG has developed order of frequency): federal agencies, Subsequently, EPA issued new a number of basin management plans universities, environmental consulting guidelines allowing it to use its own that include restoration of native firms, state agencies, independent discretion in deciding whether to aquatic faunal assemblages. Other parties, and non-governmental consult with FWS concerning papers described the creation of new organizations. The meeting was endangered species. These pond habitat for the Columbia spotted sponsored by the California guidelines are being challenged. -
The Palaeozoic Ancestry of Salamanders, Frogs and Caecilians
Blackwell Publishing LtdOxford, UKZOJZoological Journal of the Linnean Society0024-4082The Lin- nean Society of London, 2007? 2007 150s2 1140 Original Articles LISSAMPHIBIAN ANCESTRYR. L. CARROLL Zoological Journal of the Linnean Society, 2007, 150 (Suppl. 1), 1–140. With 78 figures The Palaeozoic Ancestry of Salamanders, Frogs and Caecilians ROBERT L. CARROLL FLS1 1Redpath Museum, McGill University, 859 Sherbrooke St W., Montreal, P.Q. Canada, H3A 2K6 The relationships of frogs, salamanders, and caecilians (Gymnophiona) with one another and with the vast assem- blage of Palaeozoic amphibians remain highly contentious phylogenetic problems. Cladistic analyses support a com- mon ancestry of the three modern orders, but fail to achieve a consensus regarding their affinities with Palaeozoic amphibians. The most exhaustive phylogenetic analyses that have been applied to the ancestry of lissamphibians have recognized few, if any, biologically significant characters differentiating the living orders. These results can be attributed to limiting the database primarily to characters common to Palaeozoic amphibians and including few fea- tures that distinguish the modern orders. Making use of the numerous derived characters that are expressed in either the larvae or adults of extant salamanders, frogs, and caecilians provides the basis for recognizing a nested sequence of synapomorphies that support a common ancestry of salamanders and anurans with temnospondyl lab- yrinthodonts to the exclusion of caecilians. The larvae of Carboniferous and Permian temnospondyl labyrinthodonts provide strong evidence for their being members of the stem group of urodeles. This is based primarily on the great similarity in the sequence of ossification of the bones of the skull and appendicular skeleton, but is also supported by detailed similarities of the hyoid apparatus. -
Animal Diversity: Chordata
Animal Diversity: Chordata Anamniotes Amphibia Dr. Monisha Khanna Acharya Narendra Dev College University of Delhi Kalkaji New Delhi – 110 019 [email protected] List Of Contents I. Introduction II. Classification A. Order 1. Apoda (Gymnophiona / Caecilia) B. Order 2. Urodela (Caudata) C. Order 3. Anura III. Origin A. From Early Chordates To The First Land Vertebrates a. Origin of Chordates b. Origin of Vertebrates c. Origin of Tetrapods B. Acquisition of Adaptations For Life On Land IV. Amphibia: General Organization a. External Appearance b. Integument c. Alimentary Canal d. Respiratory Organs And Voice Apparatus e. Blood Vascular System f. Endoskeleton g. Nervous System And Sensory Organs h. Urinogenital System And Osmoregulation V. Parental Care In Amphibia A. Order Anura B. Order Urodela C. Order Apoda I. INTRODUCTION Members of the phylum Chordata are commonly referred to as chordates. Four characters, of prime diagnostic importance, are possessed by all chordates: 1) A primitive endoskeletal structure called the notochord is present during early embryonic life. This pliant, rod-like structure, composed of a peculiar type of connective tissue, is located along the mid-dorsal line, where it forms the axis of support for the body. In some animals it persists as such throughout life, but in most chordates it serves as a foundation around which the vertebral column is built. 2) A hollow, dorsal nerve tube is present sometime during life. The central nervous system, made up of the brain and the spinal cord, is located in a dorsal position just above the notochord. It is a hollow canal from one end to the other. -
Hynobiid Salamanders (Paradactylodon Persicus S.L.) from Iran, Illuminated by Phylogeographic, Developmental, and Transcriptomic Data
G C A T T A C G G C A T genes Article Shedding Light on a Secretive Tertiary Urodelean Relict: Hynobiid Salamanders (Paradactylodon persicus s.l.) from Iran, Illuminated by Phylogeographic, Developmental, and Transcriptomic Data Matthias Stöck 1,* , Fatemeh Fakharzadeh 2, Heiner Kuhl 1, Beata Rozenblut-Ko´scisty 3, Sophie Leinweber 1, Riddhi Patel 4, Mehregan Ebrahimi 5,6, Sebastian Voitel 7, Josef Friedrich Schmidtler 8, Haji Gholi Kami 9, Maria Ogielska 3 and Daniel W. Förster 4 1 Leibniz-Institute of Freshwater Ecology and Inland Fisheries (IGB), Müggelseedamm 301, D-12587 Berlin, Germany; [email protected] (H.K.); [email protected] (S.L.) 2 Department of Biology, Faculty of Sciences, Shahid Chamran University of Ahvaz, Ahvaz 61357-43135, Iran; ff[email protected] 3 Department of Evolutionary Biology and Conservation of Vertebrates, Wroclaw University, Sienkiewicza 21, 50-335 Wroclaw, Poland; [email protected] (B.R.-K.); [email protected] (M.O.) 4 Evolutionary Genetics Department, Leibniz-Institute for Zoo and Wildlife Research, Alfred-Kowalke-Str. 17, 10315 Berlin, Germany; [email protected] (R.P.); [email protected] (D.W.F.) 5 Department of Biology, College of Sciences, Shiraz University, Shiraz 71467-13565, Iran; [email protected] 6 School of Biological Sciences, Flinders University, Adelaide, SA 5001, Australia 7 Independent Researcher, Spangenbergstraße 81, D-06295 Eisleben, Germany; [email protected] 8 Zoologische Staatssammlung, Münchhausenstraße 21, 81247 München, Germany; [email protected] 9 Department of Biology, Faculty of Sciences, Golestan University, Gorgan 49136-15759, Iran; [email protected] * Correspondence: [email protected]; Tel.: +49-30-64-181-629 Received: 17 March 2019; Accepted: 11 April 2019; Published: 18 April 2019 Abstract: The Hyrcanian Forests present a unique Tertiary relict ecosystem, covering the northern Elburz and Talysh Ranges (Iran, Azerbaijan), a poorly investigated, unique biodiversity hotspot with many cryptic species. -
Evolution of Hox Gene Clusters in Deuterostomes Pascual-Anaya Et Al
Evolution of Hox gene clusters in deuterostomes Pascual-Anaya et al. Pascual-Anaya et al. BMC Developmental Biology 2013, 13:26 http://www.biomedcentral.com/1471-213X/13/26 Pascual-Anaya et al. BMC Developmental Biology 2013, 13:26 http://www.biomedcentral.com/1471-213X/13/26 REVIEW Open Access Evolution of Hox gene clusters in deuterostomes Juan Pascual-Anaya1*, Salvatore D’Aniello2, Shigeru Kuratani1 and Jordi Garcia-Fernàndez3* Abstract Hox genes, with their similar roles in animals as evolutionarily distant as humans and flies, have fascinated biologists since their discovery nearly 30 years ago. During the last two decades, reports on Hox genes from a still growing number of eumetazoan species have increased our knowledge on the Hox gene contents of a wide range of animal groups. In this review, we summarize the current Hox inventory among deuterostomes, not only in the well-known teleosts and tetrapods, but also in the earlier vertebrate and invertebrate groups. We draw an updated picture of the ancestral repertoires of the different lineages, a sort of “genome Hox bar-code” for most clades. This scenario allows us to infer differential gene or cluster losses and gains that occurred during deuterostome evolution, which might be causally linked to the morphological changes that led to these widely diverse animal taxa. Finally, we focus on the challenging family of posterior Hox genes, which probably originated through independent tandem duplication events at the origin of each of the ambulacrarian, cephalochordate and vertebrate/urochordate lineages. Background The expression patterns of Hox genes reflect their pos- Hox genes comprise a wide subfamily of homeobox- ition in the cluster: genes at the 3′ end are expressed in containing transcription factors. -
Skeletochronological Assessment of Age in the Persian Mountain
Caspian J. Environ. Sci. 2017, Vol. 15 No. 1 pp. 75~84 ©Copyright by University of Guilan, Printed in I.R. Iran [Research] Skeletochronological assessment of age in the Persian mountain salamander, Paradactylodon gorganensis (Clergue-Gazeau and Thorn, 1979) (Caudata: Hynobiidae) from Golestan Province, Iran S. Zivari, H. Gholi Kami* Department of Biology, Faculty of Sciences, Golestan University, Gorgan, Golestan Province, Iran. * Corresponding author’s E-mail:[email protected] (Received: Aug. 07. 2016 Accepted: Jan. 11. 2017) ABSTRACT Lines of arrested growth (LAGs) were assessed in the Golestan Province population of the critically - endangered museum specimens of Persian mountain salamander, Paradactylodon gorganensis (Clergue-Gazeau and Thorn, 1979) from Northeastern Iran using skeletochronology. LAGs were clearly discernable in the tibia and femur bone cross- sections and could be interpreted for age determination. The number of LAGs in the sampled Golestan Province population (n=29)was found to be 8-11 (9.75 ± 1.13 years) in males (n=12), 7-13 (9.26 ± 1.98 years) in females (n=15) and 7 and 8 (7.50 ± 0.70 years) in two unknown sex specimens for the first time.The snout-vent length (SVL) was 90.20 - 119.38 (103.85 ± 10.48) mm in males, 77.60 - 135.00 (105.96 ± 15.89) in females and 108.00 and 123.00 mm in unknown sex specimens. It was not found significant correlation between body size and age (P > 0.05). Although limited in sample size, the data suggest that males with ages over eleven years are absent in the fixed specimens studied.