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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
The Phylogeny of Oncorhynchus (Euteleostei: Salmonidae) Based on Behavioral and Life History Characters
Copeia, 2007(3), pp. 520–533 The Phylogeny of Oncorhynchus (Euteleostei: Salmonidae) Based on Behavioral and Life History Characters MANU ESTEVE AND DEBORAH A. MCLENNAN There is no consensus between morphological and molecular data concerning the relationships within the Pacific basin salmon and trout clade Oncorhynchus. In this paper we add another source of characters to the discussion. Phylogenetic analysis of 39 behavioral and life history traits produced one tree structured (O. clarki (O. mykiss (O. masou (O. kisutch (O. tshawytscha (O. nerka (O. keta, O. gorbuscha))))))). This topology is congruent with the phylogeny based upon Bayesian analysis of all available nuclear and mitochondrial gene sequences, with the exception of two nodes: behavior supports the morphological data in breaking the sister-group relationship between O. mykiss and O. clarki, and between O. kisutch and O. tshawytscha. The behavioral traits agreed with molecular rather than morphological data in placing O. keta as the sister-group of O. gorbuscha. The behavioral traits also resolve the molecular-based ambiguity concerning the placement of O. masou, placing it as sister to the rest of the Pacific basin salmon. Behavioral plus morphological data placed Salmo, not Salvelinus, as more closely related to Oncorhynchus, but that placement was only weakly supported and awaits collection of missing data from enigmatic species such as the lake trout, Salvelinus namaycush. Overall, the phenotypic characters helped resolve ambiguities that may have been created by molecular introgression, while the molecular traits helped resolve ambiguities introduced by phenotypic homoplasy. It seems reasonable therefore, that systematists can best respond to the escalating biodiversity crisis by forming research groups to gather behavioral and ecological information while specimens are being collected for morphological and molecular analysis. -
BONY FISHES 602 Bony Fishes
click for previous page BONY FISHES 602 Bony Fishes GENERAL REMARKS by K.E. Carpenter, Old Dominion University, Virginia, USA ony fishes constitute the bulk, by far, of both the diversity and total landings of marine organisms encoun- Btered in fisheries of the Western Central Atlantic.They are found in all macrofaunal marine and estuarine habitats and exhibit a lavish array of adaptations to these environments. This extreme diversity of form and taxa presents an exceptional challenge for identification. There are 30 orders and 269 families of bony fishes presented in this guide, representing all families known from the area. Each order and family presents a unique suite of taxonomic problems and relevant characters. The purpose of this preliminary section on technical terms and guide to orders and families is to serve as an introduction and initial identification guide to this taxonomic diversity. It should also serve as a general reference for those features most commonly used in identification of bony fishes throughout the remaining volumes. However, I cannot begin to introduce the many facets of fish biology relevant to understanding the diversity of fishes in a few pages. For this, the reader is directed to one of the several general texts on fish biology such as the ones by Bond (1996), Moyle and Cech (1996), and Helfman et al.(1997) listed below. A general introduction to the fisheries of bony fishes in this region is given in the introduction to these volumes. Taxonomic details relevant to a specific family are explained under each of the appropriate family sections. The classification of bony fishes continues to transform as our knowledge of their evolutionary relationships improves. -
Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi
Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 (http://www.accessscience.com/) Article by: Boschung, Herbert Department of Biological Sciences, University of Alabama, Tuscaloosa, Alabama. Gardiner, Brian Linnean Society of London, Burlington House, Piccadilly, London, United Kingdom. Publication year: 2014 DOI: http://dx.doi.org/10.1036/1097-8542.680400 (http://dx.doi.org/10.1036/1097-8542.680400) Content Morphology Euteleostei Bibliography Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi The most recent group of actinopterygians (rayfin fishes), first appearing in the Upper Triassic (Fig. 1). About 26,840 species are contained within the Teleostei, accounting for more than half of all living vertebrates and over 96% of all living fishes. Teleosts comprise 517 families, of which 69 are extinct, leaving 448 extant families; of these, about 43% have no fossil record. See also: Actinopterygii (/content/actinopterygii/009100); Osteichthyes (/content/osteichthyes/478500) Fig. 1 Cladogram showing the relationships of the extant teleosts with the other extant actinopterygians. (J. S. Nelson, Fishes of the World, 4th ed., Wiley, New York, 2006) 1 of 9 10/7/2015 1:07 PM Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 Morphology Much of the evidence for teleost monophyly (evolving from a common ancestral form) and relationships comes from the caudal skeleton and concomitant acquisition of a homocercal tail (upper and lower lobes of the caudal fin are symmetrical). This type of tail primitively results from an ontogenetic fusion of centra (bodies of vertebrae) and the possession of paired bracing bones located bilaterally along the dorsal region of the caudal skeleton, derived ontogenetically from the neural arches (uroneurals) of the ural (tail) centra. -
Origin, Evolution and Homologies of the Weberian Apparatus: a New Insight
Int. J. Morphol., 27(2):333-354, 2009. Origin, Evolution and Homologies of the Weberian Apparatus: A New Insight Origen, Evolución y Homologías del Aparato Weberiano: Un Nuevo Acercamiento Rui Diogo DIOGO, R. Origin, evolution and homologies of the Weberian apparatus: a new insight. Int. J. Morphol., 27(2):333-354, 2009. SUMMARY: The Weberian apparatus is essentially a mechanical device improving audition, consisting of a double chain of ossicles joining the air bladder to the inner ear. Despite being one of the most notable complex systems of teleost fishes and the subject of several comparative, developmental and functional studies, there is still much controversy concerning the origin, evolution and homologies of the structures forming this apparatus. In this paper I provide a new insight on these topics, which takes into account the results of recent works on comparative anatomy, paleontology, and ontogeny as well as of a recent extensive phylogenetic analysis including not only numerous otophysan and non-otophysan extant otocephalans but also ostariophysan fossils such as †Chanoides macropoma, †Clupavus maroccanus, †Santanichthys diasii, †Lusitanichthys characiformis, †Sorbininardus apuliensis and †Tischlingerichthys viohli. According to the evidence now available, the Weberian apparatus of otophysans seems to be the outcome of a functional integration of features acquired in basal otocephalans and in basal ostariophysans, which were very likely not directly related with the functioning of this apparatus, and of features acquired in the nodes leading to the Otophysi and to the clade including the four extant otophysan orders, which could well have been the result of a selection directly related to the functioning of the apparatus. -
V a Tion & Management of Reef Fish Sp a Wning Aggrega Tions
handbook CONSERVATION & MANAGEMENT OF REEF FISH SPAWNING AGGREGATIONS A Handbook for the Conservation & Management of Reef Fish Spawning Aggregations © Seapics.com Without the Land and the Sea, and their Bounties, the People and their Traditional Ways would be Poor and without Cultural Identity Fijian Proverb Why a Handbook? 1 What are Spawning Aggregations? 2 How to Identify Spawning Aggregations 2 Species that Aggregate to Spawn 2 Contents Places Where Aggregations Form 9 Concern for Spawning Aggregations 10 Importance for Fish and Fishermen 10 Trends in Exploited Aggregations 12 Managing & Conserving Spawning Aggregations 13 Research and Monitoring 13 Management Options 15 What is SCRFA? 16 How can SCRFA Help? 16 SCRFA Work to Date 17 Useful References 18 SCRFA Board of Directors 20 Since 2000, scientists, fishery managers, conservationists and politicians have become increasingly aware, not only that many commercially important coral reef fish species aggregate to spawn (reproduce) but also that these important reproductive gatherings are particularly susceptible to fishing. In extreme cases, when fishing pressure is high, aggregations can dwindle and even cease to form, sometimes within just a few years. Whether or not they will recover and what the long-term effects on the fish population(s) might be of such declines are not yet known. We do know, however, that healthy aggregations tend to be associated with healthy fisheries. It is, therefore, important to understand and better protect this critical part of the life cycle of aggregating species to ensure that they continue to yield food and support livelihoods. Why a Handbook? As fishing technology improved in the second half of the twentieth century, engines came to replace sails and oars, the cash economy developed rapidly, and human populations and demand for seafood grew, the pressures on reef fishes for food, and especially for money, increased enormously. -
Fish Feeding and Dynamics of Soft-Sediment Mollusc Populations in a Coral Reef Lagoon
MARINE ECOLOGY PROGRESS SERIES Published March 3 Mar. Ecol. Prog. Ser. Fish feeding and dynamics of soft-sediment mollusc populations in a coral reef lagoon G. P. Jones*, D. J. Ferrelle*,P. F. Sale*** School of Biological Sciences, University of Sydney, Sydney 2006, N.S.W., Australia ABSTRACT: Large coral reef fish were experimentally excluded from enclosed plots for 2 yr to examine their effect on the dynamics of soft sediment mollusc populations from areas in One Tree lagoon (Great Barrier Reef). Three teleost fish which feed on benthic molluscs. Lethrinus nebulosus, Diagramrna pictum and Pseudocaranx dentex, were common in the vicinity of the cages. Surveys of feeding scars in the sand indicated similar use of cage control and open control plots and effective exclusion by cages. The densities of 10 common species of prey were variable between locations and among times. Only 2 species exhibited an effect attributable to feeding by fish, and this was at one location only. The effect size was small relative to the spatial and temporal variation in numbers. The power of the test was sufficient to detect effects of fish on most species, had they occurred. A number of the molluscs exhibited annual cycles in abundance, with summer peaks due to an influx of juveniles but almost total loss of this cohort in winter. There was no evidence that predation altered the size-structure of these populations. While predation by fish is clearly intense, it does not have significant effects on the demo- graphy of these molluscs. The results cast doubt on the generality of the claim that predation is an important structuring agent in tropical communities. -
Characterization of the G Protein-Coupled Receptor Family
www.nature.com/scientificreports OPEN Characterization of the G protein‑coupled receptor family SREB across fsh evolution Timothy S. Breton1*, William G. B. Sampson1, Benjamin Cliford2, Anyssa M. Phaneuf1, Ilze Smidt3, Tamera True1, Andrew R. Wilcox1, Taylor Lipscomb4,5, Casey Murray4 & Matthew A. DiMaggio4 The SREB (Super‑conserved Receptors Expressed in Brain) family of G protein‑coupled receptors is highly conserved across vertebrates and consists of three members: SREB1 (orphan receptor GPR27), SREB2 (GPR85), and SREB3 (GPR173). Ligands for these receptors are largely unknown or only recently identifed, and functions for all three are still beginning to be understood, including roles in glucose homeostasis, neurogenesis, and hypothalamic control of reproduction. In addition to the brain, all three are expressed in gonads, but relatively few studies have focused on this, especially in non‑mammalian models or in an integrated approach across the entire receptor family. The purpose of this study was to more fully characterize sreb genes in fsh, using comparative genomics and gonadal expression analyses in fve diverse ray‑fnned (Actinopterygii) species across evolution. Several unique characteristics were identifed in fsh, including: (1) a novel, fourth euteleost‑specifc gene (sreb3b or gpr173b) that likely emerged from a copy of sreb3 in a separate event after the teleost whole genome duplication, (2) sreb3a gene loss in Order Cyprinodontiformes, and (3) expression diferences between a gar species and teleosts. Overall, gonadal patterns suggested an important role for all sreb genes in teleost testicular development, while gar were characterized by greater ovarian expression that may refect similar roles to mammals. The novel sreb3b gene was also characterized by several unique features, including divergent but highly conserved amino acid positions, and elevated brain expression in pufer (Dichotomyctere nigroviridis) that more closely matched sreb2, not sreb3a. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Development of the Muscles Associated with the Mandibular and Hyoid Arches in the Siberian Sturgeon, Acipenser Baerii (Acipenseriformes: Acipenseridae)
Received: 31 May 2017 | Revised: 24 September 2017 | Accepted: 29 September 2017 DOI: 10.1002/jmor.20761 RESEARCH ARTICLE Development of the muscles associated with the mandibular and hyoid arches in the Siberian sturgeon, Acipenser baerii (Acipenseriformes: Acipenseridae) Peter Warth1 | Eric J. Hilton2 | Benjamin Naumann1 | Lennart Olsson1 | Peter Konstantinidis3 1Institut fur€ Spezielle Zoologie und Evolutionsbiologie mit Phyletischem Abstract Museum, Friedrich-Schiller-Universität Jena, The skeleton of the jaws and neurocranium of sturgeons (Acipenseridae) are connected only Germany through the hyoid arch. This arrangement allows considerable protrusion and retraction of the 2 Department of Fisheries Science, Virginia jaws and is highly specialized among ray-finned fishes (Actinopterygii). To better understand the Institute of Marine Science, College of unique morphology and the evolution of the jaw apparatus in Acipenseridae, we investigated the William & Mary, Gloucester Point, Virginia development of the muscles of the mandibular and hyoid arches of the Siberian sturgeon, Aci- 3Department of Fisheries and Wildlife, Oregon State University, Corvallis, Oregon penser baerii. We used a combination of antibody staining and formalin-induced fluorescence of tissues imaged with confocal microscopy and subsequent three-dimensional reconstruction. These Correspondence data were analyzed to address the identity of previously controversial and newly discovered mus- Peter Warth, Institut fur€ Spezielle Zoologie cle portions. Our results indicate that the anlagen of the muscles in A. baerii develop similarly to und Evolutionsbiologie mit Phyletischem Museum, Friedrich-Schiller-Universität Jena, those of other actinopterygians, although they differ by not differentiating into distinct muscles. Erbertstr. 1, 07743 Jena, Germany. This is exemplified by the subpartitioning of the m. adductor mandibulae as well as the massive m. -
Convergent Evolution of Weakly Electric Fishes from Floodplain Habitats in Africa and South America
Environmental Biology of Fishes 49: 175–186, 1997. 1997 Kluwer Academic Publishers. Printed in the Netherlands. Convergent evolution of weakly electric fishes from floodplain habitats in Africa and South America Kirk O. Winemiller & Alphonse Adite Department of Wildlife and Fisheries Sciences, Texas A&M University, College Station, TX 77843, U.S.A. Received 19.7.1995 Accepted 27.5.1996 Key words: diet, electrogenesis, electroreception, foraging, morphology, niche, Venezuela, Zambia Synopsis An assemblage of seven gymnotiform fishes in Venezuela was compared with an assemblage of six mormyri- form fishes in Zambia to test the assumption of convergent evolution in the two groups of very distantly related, weakly electric, noctournal fishes. Both assemblages occur in strongly seasonal floodplain habitats, but the upper Zambezi floodplain in Zambia covers a much larger area. The two assemblages had broad diet overlap but relatively narrow overlap of morphological attributes associated with feeding. The gymnotiform assemblage had greater morphological variation, but mormyriforms had more dietary variation. There was ample evidence of evolutionary convergence based on both morphology and diet, and this was despite the fact that species pairwise morphological similarity and dietary similarity were uncorrelated in this dataset. For the most part, the two groups have diversified in a convergent fashion within the confines of their broader niche as nocturnal invertebrate feeders. Both assemblages contain midwater planktivores, microphagous vegetation- dwellers, macrophagous benthic foragers, and long-snouted benthic probers. The gymnotiform assemblage has one piscivore, a niche not represented in the upper Zambezi mormyriform assemblage, but present in the form of Mormyrops deliciousus in the lower Zambezi and many other regions of Africa. -
The Air-Breathing Behaviour of Brevimyrus Niger (Osteoglossomorpha, Mormyridae)
Journal of Fish Biology (2007) 71, 279–283 doi:10.1111/j.1095-8649.2007.01473.x, available onlineathttp://www.blackwell-synergy.com The air-breathing behaviour of Brevimyrus niger (Osteoglossomorpha, Mormyridae) T. MORITZ* AND K. E. LINSENMAIR Lehrstuhl fur¨ Tiero¨kologie und Tropenbiologie, Theodor-Boveri-Institut, Universita¨t Wurzburg,¨ Am Hubland, 97074 Wurzburg,¨ Germany (Received 2 May 2006, Accepted 6 February 2007) Brevimyrus niger is reported to breathe atmospheric air, confirming previous documenta- tion of air breathing in this species. Air is taken up by rising to the water surface and gulping, or permanently resting just below the surface, depending on the environmental conditions. # 2007 The Authors Journal compilation # 2007 The Fisheries Society of the British Isles Key words: elephantfishes; Osteoglossomorpha; weakly electric fish. The Mormyridae consists of 201 weakly electric fishes endemic to Africa (Nelson, 2006). They belong to the Osteoglossomorpha among which air-breathing behaviour is known from several families. All genera of the Osteoglossidae are able to breathe atmospheric air utilizing their swimbladder as a respiratory organ, i.e. Heterotis niloticus (Cuvier) (Luling,¨ 1977), Arapaima gigas (Schinz) (Luling,¨ 1964, 1977). Similarly, Pantodon buchholzi Peters (Schwarz, 1969), which is the only member of the Pantodontidae, and the members of the Notopteridae (Graham, 1997) are air-breathers. A close relative to the mormyrids, Gymnarchus niloticus Cuvier, the only member of the Gymnarchidae, is also well known to breathe air (Hyrtl, 1856; Bertyl, 1958). In the remaining two families within the Osteoglossomorpha air breathing has never been reported from the Hiodontidae (Graham, 1997) and only for a single species, Brevimyrus niger (Gunther),¨ within the Mormyridae (Benech & Lek, 1981; Bigorne, 2003).