Reef-Associated Fishes Have More Maneuverable Body Shapes at a Macroevolutionary Scale
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Coral Reef Fishes Which Forage in the Water Column
HelgotS.nder wiss. Meeresunters, 24, 292-306 (1973) Coral reef fishes which forage in the water column A review of their morphology, behavior, ecology and evolutionary implications W. P. DAVIS1, & R. S. BIRDSONG2 1 Mediterranean Marine Sorting Center; Khereddine, Tunisia, and 2 Department of Biology, Old Dominion University; Norfolk, Virginia, USA EXTRAIT: <<Fourrages. des poissons des r&ifs de coraux dans la colonne d'eau: Morpholo- gie, comportement, &ologie et ~volution. Dans un biotope ~t r&if de coraiI, des esp&es &roitement li~es peuvent servir d'exempIe de diff~renciatlon sur le plan de t'~volutlon. La radiation ~volutive de poissons repr&entant plusieurs familles du r~eif corallien tropical a conduit ~t plusieurs reprises ~t la formation de <dourragers dans la colonne d'eam>. Ce mode de vie comporte une s~rie de caract~res morphologiques et &hologiques d~finis. On trouve des ~xemples similaires dans I'eau douce et dans des habitats non tropicaux. Les traits distinctifs de cette sp&ialisation, la syst6matique, les caract~rlstiques &ologiques et celies se rapportant ~t l'6volution sont d&rits et discut~s. INTRODUCTION The rapid adoption of in situ studies to investigate lifeways of organisms in the oceans is succeeding in bringing the laboratory to the ocean. Before, the conclusions that observers and scientists were classically forced to accept oPcen represented in- accurate abstractions of things that could not be observed. During the past 10-20 years the cataloging of the fauna and flora of the coral reef habitats has been carried out at an escalated rate, coupled with the many and vast improvements in tools, allowing increased periods of continual observation under sea. -
Spatial and Temporal Distribution of the Demersal Fish Fauna in a Baltic Archipelago As Estimated by SCUBA Census
MARINE ECOLOGY - PROGRESS SERIES Vol. 23: 3143, 1985 Published April 25 Mar. Ecol. hog. Ser. 1 l Spatial and temporal distribution of the demersal fish fauna in a Baltic archipelago as estimated by SCUBA census B.-0. Jansson, G. Aneer & S. Nellbring Asko Laboratory, Institute of Marine Ecology, University of Stockholm, S-106 91 Stockholm, Sweden ABSTRACT: A quantitative investigation of the demersal fish fauna of a 160 km2 archipelago area in the northern Baltic proper was carried out by SCUBA census technique. Thirty-four stations covering seaweed areas, shallow soft bottoms with seagrass and pond weeds, and deeper, naked soft bottoms down to a depth of 21 m were visited at all seasons. The results are compared with those obtained by traditional gill-net fishing. The dominating species are the gobiids (particularly Pornatoschistus rninutus) which make up 75 % of the total fish fauna but only 8.4 % of the total biomass. Zoarces viviparus, Cottus gobio and Platichtys flesus are common elements, with P. flesus constituting more than half of the biomass. Low abundance of all species except Z. viviparus is found in March-April, gobies having a maximum in September-October and P. flesus in November. Spatially, P. rninutus shows the widest vertical range being about equally distributed between surface and 20 m depth. C. gobio aggregates in the upper 10 m. The Mytilus bottoms and the deeper soft bottoms are the most populated areas. The former is characterized by Gobius niger, Z. viviparus and Pholis gunnellus which use the shelter offered by the numerous boulders and stones. The latter is totally dominated by P. -
Shrinking Shark Numbers on the Great Barrier Reef Unlikely to Have Cascading Impacts
Khaled bin Sultan Living Oceans Foundation 821 Chesapeake Avenue #3568 • Annapolis, MD 21403 443.221.6844 • LivingOceansFoundation.org FOR IMMEDIATE RELEASE Shrinking shark numbers on the Great Barrier Reef unlikely to have cascading impacts New evidence suggests that reef sharks exert weak control over coral reef food webs Shark populations are dwindling worldwide, and scientists are concerned that the decline could trigger a cascade of impacts that hurt coral reefs. But a new paper published in Ecology suggests that the effects of shark losses are unlikely to reverberate throughout the marine food web. Instead, the findings point to physical and ecological features, like the structure of coral reefs and patterns of water movement, as important regulators of coral reef communities. Lead author Amelia Desbiens, a marine ecologist at the University of Queensland in Brisbane, Australia, conducted the study using data collected by the Khaled bin Sultan Living Oceans Foundation during its 2014 Global Reef Expedition, which surveyed shark populations on the northern Great Barrier Reef. Back then, this area was one of the most pristine reef regions in the world. The divers were heartened by the dizzying array of fish species in some locations, counting a total of 433 species of coral reef fish across their study area. “We were pleasantly surprised at the status of the coral reefs and fish communities in the northern Great Barrier Reef when we surveyed them in 2014,” said Alex Dempsey, Director of Science Management at the Khaled bin Sultan Living Oceans Foundation, and one of the paper’s authors. “We saw a relatively high percentage of live coral cover, and an abundance of reef fish species that gave us hope that perhaps these reef systems were resilient and have been able to persistently flourish.” They also found that no-fishing zones had four times as many reef sharks as the zones that allow fishing. -
Fish Feeding and Dynamics of Soft-Sediment Mollusc Populations in a Coral Reef Lagoon
MARINE ECOLOGY PROGRESS SERIES Published March 3 Mar. Ecol. Prog. Ser. Fish feeding and dynamics of soft-sediment mollusc populations in a coral reef lagoon G. P. Jones*, D. J. Ferrelle*,P. F. Sale*** School of Biological Sciences, University of Sydney, Sydney 2006, N.S.W., Australia ABSTRACT: Large coral reef fish were experimentally excluded from enclosed plots for 2 yr to examine their effect on the dynamics of soft sediment mollusc populations from areas in One Tree lagoon (Great Barrier Reef). Three teleost fish which feed on benthic molluscs. Lethrinus nebulosus, Diagramrna pictum and Pseudocaranx dentex, were common in the vicinity of the cages. Surveys of feeding scars in the sand indicated similar use of cage control and open control plots and effective exclusion by cages. The densities of 10 common species of prey were variable between locations and among times. Only 2 species exhibited an effect attributable to feeding by fish, and this was at one location only. The effect size was small relative to the spatial and temporal variation in numbers. The power of the test was sufficient to detect effects of fish on most species, had they occurred. A number of the molluscs exhibited annual cycles in abundance, with summer peaks due to an influx of juveniles but almost total loss of this cohort in winter. There was no evidence that predation altered the size-structure of these populations. While predation by fish is clearly intense, it does not have significant effects on the demo- graphy of these molluscs. The results cast doubt on the generality of the claim that predation is an important structuring agent in tropical communities. -
Transposable Elements and Teleost Migratory Behaviour
International Journal of Molecular Sciences Article Transposable Elements and Teleost Migratory Behaviour Elisa Carotti 1,†, Federica Carducci 1,†, Adriana Canapa 1, Marco Barucca 1,* , Samuele Greco 2 , Marco Gerdol 2 and Maria Assunta Biscotti 1 1 Department of Life and Environmental Sciences, Polytechnic University of Marche, Via Brecce Bianche, 60131 Ancona, Italy; [email protected] (E.C.); [email protected] (F.C.); [email protected] (A.C.); [email protected] (M.A.B.) 2 Department of Life Sciences, University of Trieste, Via L. Giorgieri, 5-34127 Trieste, Italy; [email protected] (S.G.); [email protected] (M.G.) * Correspondence: [email protected] † Equal contribution. Abstract: Transposable elements (TEs) represent a considerable fraction of eukaryotic genomes, thereby contributing to genome size, chromosomal rearrangements, and to the generation of new coding genes or regulatory elements. An increasing number of works have reported a link between the genomic abundance of TEs and the adaptation to specific environmental conditions. Diadromy represents a fascinating feature of fish, protagonists of migratory routes between marine and fresh- water for reproduction. In this work, we investigated the genomes of 24 fish species, including 15 teleosts with a migratory behaviour. The expected higher relative abundance of DNA transposons in ray-finned fish compared with the other fish groups was not confirmed by the analysis of the dataset considered. The relative contribution of different TE types in migratory ray-finned species did not show clear differences between oceanodromous and potamodromous fish. On the contrary, a remarkable relationship between migratory behaviour and the quantitative difference reported for short interspersed nuclear (retro)elements (SINEs) emerged from the comparison between anadro- mous and catadromous species, independently from their phylogenetic position. -
Impacts of Sharks on Coral Reef Ecosystems } Do Healthy Reefs Need
Impacts of sharks on coral reef ecosystems } Do healthy reefs need sharks? This is one of the most misunderstood questions in coral reef ecology. Shark populations are declining due to habitat loss, overfishing, and other stressors. It is important to understand how these losses could affect the rest of the ecosystem. Understanding the predator-prey interactions between herbivores and sharks is crucial for coral reef conservation. As top predators, sharks not only eat other fish, but they can also affect their behavior. In the presence of sharks, herbivorous fish may be concentrating their grazing to small, sheltered areas. Because these fish have to eat where they are safe from predators, there is more space to allow young coral to settle, grow, and thrive. In the absence of sharks, herbivorous fish may spread out their grazing randomly across large patches of algae, leaving few well-defined or cleared areas for corals to settle. Fortunately, Florida International University has just the place to explore these dynamic questions, a lab under the sea – Aquarius Reef Base. From September 7th to 14th, a mission at Aquarius Reef Base will combine sonar with baited remote underwater video surveys (BRUVs), an experiment the first of its kind to bring these technologies together. Researchers on this mission strive to understand the direct impact of shark presence on herbivorous fish behavior as well as the indirect impact of sharks on algae communities. Combining these technologies: • Provides a new way to study reef fish behavior • Carves the path forward for future ecological research • Offers insights that may lead to critical marine conservation outcomes Mission Overview: Dr. -
Adult and Larval Fish Assemblages in Front of Marine Biological Station, Hurghada, Red Sea, Egypt
INTERNATIONAL JOURNAL OF ENVIRONMENTAL SCIENCE AND ENGINEERING (IJESE) Vol. 4: 55- 65 (2013) http://www.pvamu.edu/texged Prairie View A&M University, Texas, USA Adult and larval reef fish communities in a coastal reef lagoon at Hurghada, Red Sea, Egypt. Mohamed A. Abu El-Regal Marine Science Department, Faculty of Science, Port Said University. ARTICLE INFO ABSTRACT Article History The aim of this study was to explore the composition of reef fish Received: Jan. 3, 2013 community in a coastal lagoon in Hurghada, Red Sea, Egypt. Accepted: March 9, 2013 Available online: Sept. 2013 Adult fishes were counted by visual censuses, whereas fish larvae _________________ were collected by 0.5 mm mesh plankton net. A total of 70 adult Keywords reef fish species and 41 larval fish species were collected. Only 16 Reef fishes. species of the recorded adults had their larvae, where as 26 species Fish larvae. were found only as larvae. It could be concluded that adult stages Red Sea. Hurghada. of the reef fish in the inshore areas are not fully represented by larval stages 1. INTRODUCTION The investigation of fish fauna and flora of the Red Sea has attracted the attention of scientists for very long time. The fish fauna received the greatest attention since the Swedish naturalist Peter Forsskal (1761-1762). Many efforts have been done to study and explore fish community structure in the area since the early staff of the Marine Biological Station in Hurghada. Gohar (1948,) and Gohar and Latif (1959), and Gohar and Mazhar (1964) have made extensive studies on the adult fish community in front of the station. -
Coral Reef Biological Criteria: Using the Clean Water Act to Protect a National Treasure
EPA/600/R-10/054 | July 2010 | www.epa.gov/ord Coral Reef Biological Criteria: Using the Clean Water Act to Protect a National Treasure Offi ce of Research and Development | National Health and Environmental Effects Research Laboratory EPA/600/R-10/054 July 2010 www.epa.gov/ord Coral Reef Biological Criteria Using the Clean Water Act to Protect a National Treasure by Patricia Bradley Leska S. Fore Atlantic Ecology Division Statistical Design NHEERL, ORD 136 NW 40th St. 33 East Quay Road Seattle, WA 98107 Key West, FL 33040 William Fisher Wayne Davis Gulf Ecology Division Environmental Analysis Division NHEERL, ORD Offi ce of Environmental Information 1 Sabine Island Drive 701 Mapes Road Gulf Breeze, FL 32561 Fort Meade, MD 20755 Contract No. EP-C-06-033 Work Assignment 3-11 Great Lakes Environmental Center, Inc Project Officer: Work Assignment Manager: Susan K. Jackson Wayne Davis Offi ce of Water Offi ce of Environmental Information Washington, DC 20460 Fort Meade, MD 20755 National Health and Environmental Effects Research Laboratory Offi ce of Research and Development Washington, DC 20460 Printed on chlorine free 100% recycled paper with 100% post-consumer fiber using vegetable-based ink. Notice and Disclaimer The U.S. Environmental Protection Agency through its Offi ce of Research and Development, Offi ce of Environmental Information, and Offi ce of Water funded and collaborated in the research described here under Contract EP-C-06-033, Work Assignment 3-11, to Great Lakes Environmental Center, Inc. It has been subject to the Agency’s peer and administrative review and has been approved for publication as an EPA document. -
The Turtle and the Hare: Reef Fish Vs. Pelagic
Part 5 in a series about inshore fi sh of Hawaii. The 12-part series is a project of the Hawaii Fisheries Local Action Strategy. THE TURTLE AND THE HARE: Surgeonfi sh REEF FISH VS. PELAGIC BY SCOTT RADWAY Tuna Photo: Scott Radway Photo: Reef fi sh and pelagic fi sh live in the same ocean, but lead very different lives. Here’s a breakdown of the differences between the life cycles of the two groups. PELAGIC Pelagic Fish TOPIC Photo: Gilbert van Ryckevorsel Photo: VS. REEF • Can grow up to 30 pounds in fi rst two years • Early sexual maturity WHEN TUNA COME UPON A BIG SCHOOL OF PREY FISH, IT’S FRENETIC. “Tuna can eat up to a quarter • Periodically abundant recruitment of their body weight in one day,” says University of Hawaii professor Charles Birkeland. Feeding activity is some- • Short life times so intense a tuna’s body temperature rises above the water temperature, causing “burns” in the muscle • Live in schools tissue and lowering the market value of the fi sh. • Travel long distances Other oceanic, or pelagic, fi sh, like the skipjack and the mahimahi, feed the same way, searching the ocean for (Hawaii to Philippines) pockets of food fi sh and gorging themselves. • Rapid population turnover On a coral reef, fi sh life is very different. On a reef, it might appear that there are plenty of fi sh for eating, but it is far from the all-you-can-eat buffet Reef Fish pelagic fi sh can fi nd in schooling prey fi sh. -
Communication Behavior: Visual Signals
Communication Behavior: Visual Signals GG Rosenthal, Texas A&M University, College Station, TX, USA NJ Marshall, The University of Queensland, Brisbane, QLD, Australia ª 2011 Elsevier Inc. All rights reserved. Introduction Evolution of Visual Signals Bioluminescent Signaling Further Reading Signaling with Reflected Light Glossary Opsin A protein found in photoreceptor cells, Astaxanthin A naturally occurring red carotenoid covalently bound to a chromophore that changes pigment. conformation when it absorbs a photon of light. Collimating Aligning in parallel. Receiver In animal communication, an individual that Cue A stimulus that may provide information to a modifies its behavior based on its perception, receiver, but has not evolved in the context of processing, or evaluation of a signal or a cue. communication. Signal In animal communication, a stimulus that has Eavesdropper An individual, such as a predator or evolved in response to selection for a communicative rival, other than the intended receiver, such as a function. potential mate, that modifies its behavior in response to Signaler An individual producing a signal. a signal. Tunaxanthin A naturally occurring red carotenoid Monochromatic Having only one color. pigment. Introduction stimulus whose communicative function is incidental. Signals are easy to identify if they involve postural Visual communication accounts for much of the popular changes, motor patterns, or skin-pattern changes per- fascination with fish. The profusion of pattern, color, and formed only in the presence of an appropriate receiver, form in coral reef fish skin patterns is one of the most such as a ritualized courtship or aggressive display. Many striking phenomena in the natural world; and many a of the most important visual signals in fish, however, are kitchen table is graced with a male Siamese fighting fish, morphological structures such as fin extensions or con- directing aggressive displays at passers-by. -
Rhodopsin Gene Evolution in Early Teleost Fishes
RESEARCH ARTICLE Rhodopsin gene evolution in early teleost fishes 1 2 1 Jhen-Nien Chen , Sarah Samadi , Wei-Jen ChenID * 1 Institute of Oceanography, National Taiwan University, Taipei, Taiwan, 2 Institute de SysteÂmatique, E volution, Biodiversite (ISYEB), MuseÂum National d'Histoire Naturelle±CNRS, Sorbonne UniversiteÂ, EPHE, Paris, France * [email protected] a1111111111 a1111111111 a1111111111 Abstract a1111111111 a1111111111 Rhodopsin mediates an essential step in image capture and is tightly associated with visual adaptations of aquatic organisms, especially species that live in dim light environments (e.g., the deep sea). The rh1 gene encoding rhodopsin was formerly considered a single- copy gene in genomes of vertebrates, but increasing exceptional cases have been found in teleost fish species. The main objective of this study was to determine to what extent the OPEN ACCESS visual adaptation of teleosts might have been shaped by the duplication and loss of rh1 Citation: Chen J-N, Samadi S, Chen W-J (2018) genes. For that purpose, homologous rh1/rh1-like sequences in genomes of ray-finned Rhodopsin gene evolution in early teleost fishes. PLoS ONE 13(11): e0206918. https://doi.org/ fishes from a wide taxonomic range were explored using a PCR-based method, data mining 10.1371/journal.pone.0206918 of public genetic/genomic databases, and subsequent phylogenomic analyses of the Editor: Michael Schubert, Laboratoire de Biologie retrieved sequences. We show that a second copy of the fish-specific intron-less rh1 is pres- du DeÂveloppement de Villefranche-sur-Mer, ent in the genomes of most anguillids (Elopomorpha), Hiodon alosoides (Osteoglossomor- FRANCE pha), and several clupeocephalan lineages.