Teleost Radiation Teleost Monophyly
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
The Phylogeny of Oncorhynchus (Euteleostei: Salmonidae) Based on Behavioral and Life History Characters
Copeia, 2007(3), pp. 520–533 The Phylogeny of Oncorhynchus (Euteleostei: Salmonidae) Based on Behavioral and Life History Characters MANU ESTEVE AND DEBORAH A. MCLENNAN There is no consensus between morphological and molecular data concerning the relationships within the Pacific basin salmon and trout clade Oncorhynchus. In this paper we add another source of characters to the discussion. Phylogenetic analysis of 39 behavioral and life history traits produced one tree structured (O. clarki (O. mykiss (O. masou (O. kisutch (O. tshawytscha (O. nerka (O. keta, O. gorbuscha))))))). This topology is congruent with the phylogeny based upon Bayesian analysis of all available nuclear and mitochondrial gene sequences, with the exception of two nodes: behavior supports the morphological data in breaking the sister-group relationship between O. mykiss and O. clarki, and between O. kisutch and O. tshawytscha. The behavioral traits agreed with molecular rather than morphological data in placing O. keta as the sister-group of O. gorbuscha. The behavioral traits also resolve the molecular-based ambiguity concerning the placement of O. masou, placing it as sister to the rest of the Pacific basin salmon. Behavioral plus morphological data placed Salmo, not Salvelinus, as more closely related to Oncorhynchus, but that placement was only weakly supported and awaits collection of missing data from enigmatic species such as the lake trout, Salvelinus namaycush. Overall, the phenotypic characters helped resolve ambiguities that may have been created by molecular introgression, while the molecular traits helped resolve ambiguities introduced by phenotypic homoplasy. It seems reasonable therefore, that systematists can best respond to the escalating biodiversity crisis by forming research groups to gather behavioral and ecological information while specimens are being collected for morphological and molecular analysis. -
BONY FISHES 602 Bony Fishes
click for previous page BONY FISHES 602 Bony Fishes GENERAL REMARKS by K.E. Carpenter, Old Dominion University, Virginia, USA ony fishes constitute the bulk, by far, of both the diversity and total landings of marine organisms encoun- Btered in fisheries of the Western Central Atlantic.They are found in all macrofaunal marine and estuarine habitats and exhibit a lavish array of adaptations to these environments. This extreme diversity of form and taxa presents an exceptional challenge for identification. There are 30 orders and 269 families of bony fishes presented in this guide, representing all families known from the area. Each order and family presents a unique suite of taxonomic problems and relevant characters. The purpose of this preliminary section on technical terms and guide to orders and families is to serve as an introduction and initial identification guide to this taxonomic diversity. It should also serve as a general reference for those features most commonly used in identification of bony fishes throughout the remaining volumes. However, I cannot begin to introduce the many facets of fish biology relevant to understanding the diversity of fishes in a few pages. For this, the reader is directed to one of the several general texts on fish biology such as the ones by Bond (1996), Moyle and Cech (1996), and Helfman et al.(1997) listed below. A general introduction to the fisheries of bony fishes in this region is given in the introduction to these volumes. Taxonomic details relevant to a specific family are explained under each of the appropriate family sections. The classification of bony fishes continues to transform as our knowledge of their evolutionary relationships improves. -
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi
Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 (http://www.accessscience.com/) Article by: Boschung, Herbert Department of Biological Sciences, University of Alabama, Tuscaloosa, Alabama. Gardiner, Brian Linnean Society of London, Burlington House, Piccadilly, London, United Kingdom. Publication year: 2014 DOI: http://dx.doi.org/10.1036/1097-8542.680400 (http://dx.doi.org/10.1036/1097-8542.680400) Content Morphology Euteleostei Bibliography Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi The most recent group of actinopterygians (rayfin fishes), first appearing in the Upper Triassic (Fig. 1). About 26,840 species are contained within the Teleostei, accounting for more than half of all living vertebrates and over 96% of all living fishes. Teleosts comprise 517 families, of which 69 are extinct, leaving 448 extant families; of these, about 43% have no fossil record. See also: Actinopterygii (/content/actinopterygii/009100); Osteichthyes (/content/osteichthyes/478500) Fig. 1 Cladogram showing the relationships of the extant teleosts with the other extant actinopterygians. (J. S. Nelson, Fishes of the World, 4th ed., Wiley, New York, 2006) 1 of 9 10/7/2015 1:07 PM Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 Morphology Much of the evidence for teleost monophyly (evolving from a common ancestral form) and relationships comes from the caudal skeleton and concomitant acquisition of a homocercal tail (upper and lower lobes of the caudal fin are symmetrical). This type of tail primitively results from an ontogenetic fusion of centra (bodies of vertebrae) and the possession of paired bracing bones located bilaterally along the dorsal region of the caudal skeleton, derived ontogenetically from the neural arches (uroneurals) of the ural (tail) centra. -
V a Tion & Management of Reef Fish Sp a Wning Aggrega Tions
handbook CONSERVATION & MANAGEMENT OF REEF FISH SPAWNING AGGREGATIONS A Handbook for the Conservation & Management of Reef Fish Spawning Aggregations © Seapics.com Without the Land and the Sea, and their Bounties, the People and their Traditional Ways would be Poor and without Cultural Identity Fijian Proverb Why a Handbook? 1 What are Spawning Aggregations? 2 How to Identify Spawning Aggregations 2 Species that Aggregate to Spawn 2 Contents Places Where Aggregations Form 9 Concern for Spawning Aggregations 10 Importance for Fish and Fishermen 10 Trends in Exploited Aggregations 12 Managing & Conserving Spawning Aggregations 13 Research and Monitoring 13 Management Options 15 What is SCRFA? 16 How can SCRFA Help? 16 SCRFA Work to Date 17 Useful References 18 SCRFA Board of Directors 20 Since 2000, scientists, fishery managers, conservationists and politicians have become increasingly aware, not only that many commercially important coral reef fish species aggregate to spawn (reproduce) but also that these important reproductive gatherings are particularly susceptible to fishing. In extreme cases, when fishing pressure is high, aggregations can dwindle and even cease to form, sometimes within just a few years. Whether or not they will recover and what the long-term effects on the fish population(s) might be of such declines are not yet known. We do know, however, that healthy aggregations tend to be associated with healthy fisheries. It is, therefore, important to understand and better protect this critical part of the life cycle of aggregating species to ensure that they continue to yield food and support livelihoods. Why a Handbook? As fishing technology improved in the second half of the twentieth century, engines came to replace sails and oars, the cash economy developed rapidly, and human populations and demand for seafood grew, the pressures on reef fishes for food, and especially for money, increased enormously. -
Fish Feeding and Dynamics of Soft-Sediment Mollusc Populations in a Coral Reef Lagoon
MARINE ECOLOGY PROGRESS SERIES Published March 3 Mar. Ecol. Prog. Ser. Fish feeding and dynamics of soft-sediment mollusc populations in a coral reef lagoon G. P. Jones*, D. J. Ferrelle*,P. F. Sale*** School of Biological Sciences, University of Sydney, Sydney 2006, N.S.W., Australia ABSTRACT: Large coral reef fish were experimentally excluded from enclosed plots for 2 yr to examine their effect on the dynamics of soft sediment mollusc populations from areas in One Tree lagoon (Great Barrier Reef). Three teleost fish which feed on benthic molluscs. Lethrinus nebulosus, Diagramrna pictum and Pseudocaranx dentex, were common in the vicinity of the cages. Surveys of feeding scars in the sand indicated similar use of cage control and open control plots and effective exclusion by cages. The densities of 10 common species of prey were variable between locations and among times. Only 2 species exhibited an effect attributable to feeding by fish, and this was at one location only. The effect size was small relative to the spatial and temporal variation in numbers. The power of the test was sufficient to detect effects of fish on most species, had they occurred. A number of the molluscs exhibited annual cycles in abundance, with summer peaks due to an influx of juveniles but almost total loss of this cohort in winter. There was no evidence that predation altered the size-structure of these populations. While predation by fish is clearly intense, it does not have significant effects on the demo- graphy of these molluscs. The results cast doubt on the generality of the claim that predation is an important structuring agent in tropical communities. -
The Need for Sustainable Management of Coral Reef Fish Spawning Aggregations
Secretariat of the Pacific Community Seventh Heads of Fisheries Meeting (28 Feb.–4 March 2011, Noumea, New Caledonia) Working Paper 7 Original: English The need for sustainable management of coral reef fish spawning aggregations Yvonne Sadovy PhD The University of Hong-Kong and Eric Clua Coral Reef Initiative for the South Pacific (CRISP), SPC www.spc.int/fame/ SPC/HOF7/Working Paper 7 Page 1 The need for sustainable management of coral reef fish spawning aggregations 1. Many commercially important species of reef fishes exhibit the habit of ‘aggregation-spawning’ whereby all mating takes place in large temporary gatherings of conspecifics. Sometimes fish also migrate in large numbers to spawning sites. These mating-related gatherings and movements are often highly predictable in time and location and hence, once discovered, are often the basis of important seasonal fisheries. Yet, as we have come to discover over the last two decades, such reproductive gatherings are highly vulnerable to over-fishing and, if severely compromised by fishing, may cease to form completely. If this happens adults will no longer produce the eggs and larvae that form the basis of fisheries at non-reproductive times of the year, and the fishery is likely to collapse. Collapse would represent the loss of significant fisheries with important and sometimes serious implications for the human communities that depend on such fishes. Moreover, aggregations can represent significant biomass and movements of animals, and are formed by many species, highlighting the ecosystem importance of these biological events. 2. Species that predictably aggregate to spawn, or gather in large spawning migrations, include a diverse range of fishes of much importance as food and commercial benefit in the Pacific. -
Convergent Evolution of Weakly Electric Fishes from Floodplain Habitats in Africa and South America
Environmental Biology of Fishes 49: 175–186, 1997. 1997 Kluwer Academic Publishers. Printed in the Netherlands. Convergent evolution of weakly electric fishes from floodplain habitats in Africa and South America Kirk O. Winemiller & Alphonse Adite Department of Wildlife and Fisheries Sciences, Texas A&M University, College Station, TX 77843, U.S.A. Received 19.7.1995 Accepted 27.5.1996 Key words: diet, electrogenesis, electroreception, foraging, morphology, niche, Venezuela, Zambia Synopsis An assemblage of seven gymnotiform fishes in Venezuela was compared with an assemblage of six mormyri- form fishes in Zambia to test the assumption of convergent evolution in the two groups of very distantly related, weakly electric, noctournal fishes. Both assemblages occur in strongly seasonal floodplain habitats, but the upper Zambezi floodplain in Zambia covers a much larger area. The two assemblages had broad diet overlap but relatively narrow overlap of morphological attributes associated with feeding. The gymnotiform assemblage had greater morphological variation, but mormyriforms had more dietary variation. There was ample evidence of evolutionary convergence based on both morphology and diet, and this was despite the fact that species pairwise morphological similarity and dietary similarity were uncorrelated in this dataset. For the most part, the two groups have diversified in a convergent fashion within the confines of their broader niche as nocturnal invertebrate feeders. Both assemblages contain midwater planktivores, microphagous vegetation- dwellers, macrophagous benthic foragers, and long-snouted benthic probers. The gymnotiform assemblage has one piscivore, a niche not represented in the upper Zambezi mormyriform assemblage, but present in the form of Mormyrops deliciousus in the lower Zambezi and many other regions of Africa. -
Transposable Elements and Teleost Migratory Behaviour
International Journal of Molecular Sciences Article Transposable Elements and Teleost Migratory Behaviour Elisa Carotti 1,†, Federica Carducci 1,†, Adriana Canapa 1, Marco Barucca 1,* , Samuele Greco 2 , Marco Gerdol 2 and Maria Assunta Biscotti 1 1 Department of Life and Environmental Sciences, Polytechnic University of Marche, Via Brecce Bianche, 60131 Ancona, Italy; [email protected] (E.C.); [email protected] (F.C.); [email protected] (A.C.); [email protected] (M.A.B.) 2 Department of Life Sciences, University of Trieste, Via L. Giorgieri, 5-34127 Trieste, Italy; [email protected] (S.G.); [email protected] (M.G.) * Correspondence: [email protected] † Equal contribution. Abstract: Transposable elements (TEs) represent a considerable fraction of eukaryotic genomes, thereby contributing to genome size, chromosomal rearrangements, and to the generation of new coding genes or regulatory elements. An increasing number of works have reported a link between the genomic abundance of TEs and the adaptation to specific environmental conditions. Diadromy represents a fascinating feature of fish, protagonists of migratory routes between marine and fresh- water for reproduction. In this work, we investigated the genomes of 24 fish species, including 15 teleosts with a migratory behaviour. The expected higher relative abundance of DNA transposons in ray-finned fish compared with the other fish groups was not confirmed by the analysis of the dataset considered. The relative contribution of different TE types in migratory ray-finned species did not show clear differences between oceanodromous and potamodromous fish. On the contrary, a remarkable relationship between migratory behaviour and the quantitative difference reported for short interspersed nuclear (retro)elements (SINEs) emerged from the comparison between anadro- mous and catadromous species, independently from their phylogenetic position. -
The Air-Breathing Behaviour of Brevimyrus Niger (Osteoglossomorpha, Mormyridae)
Journal of Fish Biology (2007) 71, 279–283 doi:10.1111/j.1095-8649.2007.01473.x, available onlineathttp://www.blackwell-synergy.com The air-breathing behaviour of Brevimyrus niger (Osteoglossomorpha, Mormyridae) T. MORITZ* AND K. E. LINSENMAIR Lehrstuhl fur¨ Tiero¨kologie und Tropenbiologie, Theodor-Boveri-Institut, Universita¨t Wurzburg,¨ Am Hubland, 97074 Wurzburg,¨ Germany (Received 2 May 2006, Accepted 6 February 2007) Brevimyrus niger is reported to breathe atmospheric air, confirming previous documenta- tion of air breathing in this species. Air is taken up by rising to the water surface and gulping, or permanently resting just below the surface, depending on the environmental conditions. # 2007 The Authors Journal compilation # 2007 The Fisheries Society of the British Isles Key words: elephantfishes; Osteoglossomorpha; weakly electric fish. The Mormyridae consists of 201 weakly electric fishes endemic to Africa (Nelson, 2006). They belong to the Osteoglossomorpha among which air-breathing behaviour is known from several families. All genera of the Osteoglossidae are able to breathe atmospheric air utilizing their swimbladder as a respiratory organ, i.e. Heterotis niloticus (Cuvier) (Luling,¨ 1977), Arapaima gigas (Schinz) (Luling,¨ 1964, 1977). Similarly, Pantodon buchholzi Peters (Schwarz, 1969), which is the only member of the Pantodontidae, and the members of the Notopteridae (Graham, 1997) are air-breathers. A close relative to the mormyrids, Gymnarchus niloticus Cuvier, the only member of the Gymnarchidae, is also well known to breathe air (Hyrtl, 1856; Bertyl, 1958). In the remaining two families within the Osteoglossomorpha air breathing has never been reported from the Hiodontidae (Graham, 1997) and only for a single species, Brevimyrus niger (Gunther),¨ within the Mormyridae (Benech & Lek, 1981; Bigorne, 2003). -
A Review of the Systematic Biology of Fossil and Living Bony-Tongue Fishes, Osteoglossomorpha (Actinopterygii: Teleostei)
Neotropical Ichthyology, 16(3): e180031, 2018 Journal homepage: www.scielo.br/ni DOI: 10.1590/1982-0224-20180031 Published online: 11 October 2018 (ISSN 1982-0224) Copyright © 2018 Sociedade Brasileira de Ictiologia Printed: 30 September 2018 (ISSN 1679-6225) Review article A review of the systematic biology of fossil and living bony-tongue fishes, Osteoglossomorpha (Actinopterygii: Teleostei) Eric J. Hilton1 and Sébastien Lavoué2,3 The bony-tongue fishes, Osteoglossomorpha, have been the focus of a great deal of morphological, systematic, and evolutio- nary study, due in part to their basal position among extant teleostean fishes. This group includes the mooneyes (Hiodontidae), knifefishes (Notopteridae), the abu (Gymnarchidae), elephantfishes (Mormyridae), arawanas and pirarucu (Osteoglossidae), and the African butterfly fish (Pantodontidae). This morphologically heterogeneous group also has a long and diverse fossil record, including taxa from all continents and both freshwater and marine deposits. The phylogenetic relationships among most extant osteoglossomorph families are widely agreed upon. However, there is still much to discover about the systematic biology of these fishes, particularly with regard to the phylogenetic affinities of several fossil taxa, within Mormyridae, and the position of Pantodon. In this paper we review the state of knowledge for osteoglossomorph fishes. We first provide an overview of the diversity of Osteoglossomorpha, and then discuss studies of the phylogeny of Osteoglossomorpha from both morphological and molecular perspectives, as well as biogeographic analyses of the group. Finally, we offer our perspectives on future needs for research on the systematic biology of Osteoglossomorpha. Keywords: Biogeography, Osteoglossidae, Paleontology, Phylogeny, Taxonomy. Os peixes da Superordem Osteoglossomorpha têm sido foco de inúmeros estudos sobre a morfologia, sistemática e evo- lução, particularmente devido à sua posição basal dentre os peixes teleósteos.