Fish Feeding and Dynamics of Soft-Sediment Mollusc Populations in a Coral Reef Lagoon
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
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SPARIFORMES · 1 The ETYFish Project © Christopher Scharpf and Kenneth J. Lazara COMMENTS: v. 4.0 - 13 Feb. 2021 Order SPARIFORMES 3 families · 49 genera · 283 species/subspecies Family LETHRINIDAE Emporerfishes and Large-eye Breams 5 genera · 43 species Subfamily Lethrininae Emporerfishes Lethrinus Cuvier 1829 from lethrinia, ancient Greek name for members of the genus Pagellus (Sparidae) which Cuvier applied to this genus Lethrinus amboinensis Bleeker 1854 -ensis, suffix denoting place: Ambon Island, Molucca Islands, Indonesia, type locality (occurs in eastern Indian Ocean and western Pacific from Indonesia east to Marshall Islands and Samoa, north to Japan, south to Western Australia) Lethrinus atkinsoni Seale 1910 patronym not identified but probably in honor of William Sackston Atkinson (1864-ca. 1925), an illustrator who prepared the plates for a paper published by Seale in 1905 and presumably the plates in this 1910 paper as well Lethrinus atlanticus Valenciennes 1830 Atlantic, the only species of the genus (and family) known to occur in the Atlantic Lethrinus borbonicus Valenciennes 1830 -icus, belonging to: Borbon (or Bourbon), early name for Réunion island, western Mascarenes, type locality (occurs in Red Sea and western Indian Ocean from Persian Gulf and East Africa to Socotra, Seychelles, Madagascar, Réunion, and the Mascarenes) Lethrinus conchyliatus (Smith 1959) clothed in purple, etymology not explained, probably referring to “bright mauve” area at central basal part of pectoral fins on living specimens Lethrinus crocineus -
Co-Occurrence of Ectoparasites of Marine Fishes: a Null Model Analysis
Ecology Letters, (2002) 5: 86±94 REPORT Co-occurrence of ectoparasites of marine ®shes: a null model analysis Abstract Nicholas J. Gotelli1 We used null model analysis to test for nonrandomness in the structure of metazoan and Klaus Rohde2 ectoparasite communities of 45 species of marine ®sh. Host species consistently 1Department of Biology, supported fewer parasite species combinations than expected by chance, even in analyses University of Vermont, that incorporated empty sites. However, for most analyses, the null hypothesis was not Burlington, Vermont 05405, rejected, and co-occurrence patterns could not be distinguished from those that might USA. arise by random colonization and extinction. We compared our results to analyses of 2 School of Biological Sciences, presence±absence matrices for vertebrate taxa, and found support for the hypothesis University of New England, that there is an ecological continuum of community organization. Presence±absence Armidale, NSW 2351, Australia. matrices for small-bodied taxa with low vagility and/or small populations (marine E-mail: [email protected] ectoparasites, herps) were mostly random, whereas presence±absence matrices for large- bodied taxa with high vagility and/or large populations (birds, mammals) were highly structured. Metazoan ectoparasites of marine ®shes fall near the low end of this continuum, with little evidence for nonrandom species co-occurrence patterns. Keywords Species co-occurrence, ectoparasite communities, niche saturation, competitive interactions, null model analysis, presence±absence matrix Ecology Letters (2002) 5: 86±94 community patterns, reinforcing previous conclusions that INTRODUCTION these parasites live in largely unstructured assemblages Parasite communities are model systems for tests of (Rohde 1979, 1989, 1992, 1993, 1994, 1998a,b, 1999; Rohde community structure because community boundaries are et al. -
Coral Reef Fishes Which Forage in the Water Column
HelgotS.nder wiss. Meeresunters, 24, 292-306 (1973) Coral reef fishes which forage in the water column A review of their morphology, behavior, ecology and evolutionary implications W. P. DAVIS1, & R. S. BIRDSONG2 1 Mediterranean Marine Sorting Center; Khereddine, Tunisia, and 2 Department of Biology, Old Dominion University; Norfolk, Virginia, USA EXTRAIT: <<Fourrages. des poissons des r&ifs de coraux dans la colonne d'eau: Morpholo- gie, comportement, &ologie et ~volution. Dans un biotope ~t r&if de coraiI, des esp&es &roitement li~es peuvent servir d'exempIe de diff~renciatlon sur le plan de t'~volutlon. La radiation ~volutive de poissons repr&entant plusieurs familles du r~eif corallien tropical a conduit ~t plusieurs reprises ~t la formation de <dourragers dans la colonne d'eam>. Ce mode de vie comporte une s~rie de caract~res morphologiques et &hologiques d~finis. On trouve des ~xemples similaires dans I'eau douce et dans des habitats non tropicaux. Les traits distinctifs de cette sp&ialisation, la syst6matique, les caract~rlstiques &ologiques et celies se rapportant ~t l'6volution sont d&rits et discut~s. INTRODUCTION The rapid adoption of in situ studies to investigate lifeways of organisms in the oceans is succeeding in bringing the laboratory to the ocean. Before, the conclusions that observers and scientists were classically forced to accept oPcen represented in- accurate abstractions of things that could not be observed. During the past 10-20 years the cataloging of the fauna and flora of the coral reef habitats has been carried out at an escalated rate, coupled with the many and vast improvements in tools, allowing increased periods of continual observation under sea. -
Spatial and Temporal Distribution of the Demersal Fish Fauna in a Baltic Archipelago As Estimated by SCUBA Census
MARINE ECOLOGY - PROGRESS SERIES Vol. 23: 3143, 1985 Published April 25 Mar. Ecol. hog. Ser. 1 l Spatial and temporal distribution of the demersal fish fauna in a Baltic archipelago as estimated by SCUBA census B.-0. Jansson, G. Aneer & S. Nellbring Asko Laboratory, Institute of Marine Ecology, University of Stockholm, S-106 91 Stockholm, Sweden ABSTRACT: A quantitative investigation of the demersal fish fauna of a 160 km2 archipelago area in the northern Baltic proper was carried out by SCUBA census technique. Thirty-four stations covering seaweed areas, shallow soft bottoms with seagrass and pond weeds, and deeper, naked soft bottoms down to a depth of 21 m were visited at all seasons. The results are compared with those obtained by traditional gill-net fishing. The dominating species are the gobiids (particularly Pornatoschistus rninutus) which make up 75 % of the total fish fauna but only 8.4 % of the total biomass. Zoarces viviparus, Cottus gobio and Platichtys flesus are common elements, with P. flesus constituting more than half of the biomass. Low abundance of all species except Z. viviparus is found in March-April, gobies having a maximum in September-October and P. flesus in November. Spatially, P. rninutus shows the widest vertical range being about equally distributed between surface and 20 m depth. C. gobio aggregates in the upper 10 m. The Mytilus bottoms and the deeper soft bottoms are the most populated areas. The former is characterized by Gobius niger, Z. viviparus and Pholis gunnellus which use the shelter offered by the numerous boulders and stones. The latter is totally dominated by P. -
Shrinking Shark Numbers on the Great Barrier Reef Unlikely to Have Cascading Impacts
Khaled bin Sultan Living Oceans Foundation 821 Chesapeake Avenue #3568 • Annapolis, MD 21403 443.221.6844 • LivingOceansFoundation.org FOR IMMEDIATE RELEASE Shrinking shark numbers on the Great Barrier Reef unlikely to have cascading impacts New evidence suggests that reef sharks exert weak control over coral reef food webs Shark populations are dwindling worldwide, and scientists are concerned that the decline could trigger a cascade of impacts that hurt coral reefs. But a new paper published in Ecology suggests that the effects of shark losses are unlikely to reverberate throughout the marine food web. Instead, the findings point to physical and ecological features, like the structure of coral reefs and patterns of water movement, as important regulators of coral reef communities. Lead author Amelia Desbiens, a marine ecologist at the University of Queensland in Brisbane, Australia, conducted the study using data collected by the Khaled bin Sultan Living Oceans Foundation during its 2014 Global Reef Expedition, which surveyed shark populations on the northern Great Barrier Reef. Back then, this area was one of the most pristine reef regions in the world. The divers were heartened by the dizzying array of fish species in some locations, counting a total of 433 species of coral reef fish across their study area. “We were pleasantly surprised at the status of the coral reefs and fish communities in the northern Great Barrier Reef when we surveyed them in 2014,” said Alex Dempsey, Director of Science Management at the Khaled bin Sultan Living Oceans Foundation, and one of the paper’s authors. “We saw a relatively high percentage of live coral cover, and an abundance of reef fish species that gave us hope that perhaps these reef systems were resilient and have been able to persistently flourish.” They also found that no-fishing zones had four times as many reef sharks as the zones that allow fishing. -
Parasites of Coral Reef Fish: How Much Do We Know? with a Bibliography of Fish Parasites in New Caledonia
Belg. J. Zool., 140 (Suppl.): 155-190 July 2010 Parasites of coral reef fish: how much do we know? With a bibliography of fish parasites in New Caledonia Jean-Lou Justine (1) UMR 7138 Systématique, Adaptation, Évolution, Muséum National d’Histoire Naturelle, 57, rue Cuvier, F-75321 Paris Cedex 05, France (2) Aquarium des lagons, B.P. 8185, 98807 Nouméa, Nouvelle-Calédonie Corresponding author: Jean-Lou Justine; e-mail: [email protected] ABSTRACT. A compilation of 107 references dealing with fish parasites in New Caledonia permitted the production of a parasite-host list and a host-parasite list. The lists include Turbellaria, Monopisthocotylea, Polyopisthocotylea, Digenea, Cestoda, Nematoda, Copepoda, Isopoda, Acanthocephala and Hirudinea, with 580 host-parasite combinations, corresponding with more than 370 species of parasites. Protozoa are not included. Platyhelminthes are the major group, with 239 species, including 98 monopisthocotylean monogeneans and 105 digeneans. Copepods include 61 records, and nematodes include 41 records. The list of fish recorded with parasites includes 195 species, in which most (ca. 170 species) are coral reef associated, the rest being a few deep-sea, pelagic or freshwater fishes. The serranids, lethrinids and lutjanids are the most commonly represented fish families. Although a list of published records does not provide a reliable estimate of biodiversity because of the important bias in publications being mainly in the domain of interest of the authors, it provides a basis to compare parasite biodiversity with other localities, and especially with other coral reefs. The present list is probably the most complete published account of parasite biodiversity of coral reef fishes. -
Biological Parameters of Lethrinus Nebulosus in the Arabian Gulf on the Saudi Arabian
1 Biological parameters of Lethrinus nebulosus in the Arabian Gulf on the Saudi Arabian 2 coasts 3 ABSTRACT: 4 In the present study about 277 specimens of Lethrinus nebulosus were used to determine some 5 biological parameters which are needed in stock assessment in the region of Arabian Gulf on 6 the Saudi Arabian coasts. The period of spawning was estimated using maturity indexes to 7 April, Mai and June. This species is gonochoric, nevertheless some cases of hermaphrodism 8 are noted. The length relationships were determined showing a correlation between total 9 length and standard length, and between total length and fork length. The weight- length 10 relationship is allometric minorante. The model of Von Bertalanffy was estimated for the 11 studied species and it is as follows: Lt = 600 *(1-exp (-0.135*(t+1.69)) for both sexes, 12 Lt = 600 (1-exp (-0.166*(t+0.746)) for females and Lt = 555 *(1-exp (-0.153*(t+1.62)) for males. 13 14 Key words: Lethrinus nebulosus, Saudian coasts, Arabian Gulf, Growth, Biology, 15 Reproduction. 16 17 18 19 20 INTRODUCTION: 1 21 The biological Information on fish are needed not only in stock assessment but also in 22 evaluation of several parameters effect, such as climatic or environmental pollution, on the 23 abundance and dynamic population of different marine species. 24 The most important biological parameters to attend this aim are the fish’s growth and 25 reproduction. Bothe these parameters can be established using monthly sampled landing fish 26 during one year in order to cover the species biological cycle. -
Transposable Elements and Teleost Migratory Behaviour
International Journal of Molecular Sciences Article Transposable Elements and Teleost Migratory Behaviour Elisa Carotti 1,†, Federica Carducci 1,†, Adriana Canapa 1, Marco Barucca 1,* , Samuele Greco 2 , Marco Gerdol 2 and Maria Assunta Biscotti 1 1 Department of Life and Environmental Sciences, Polytechnic University of Marche, Via Brecce Bianche, 60131 Ancona, Italy; [email protected] (E.C.); [email protected] (F.C.); [email protected] (A.C.); [email protected] (M.A.B.) 2 Department of Life Sciences, University of Trieste, Via L. Giorgieri, 5-34127 Trieste, Italy; [email protected] (S.G.); [email protected] (M.G.) * Correspondence: [email protected] † Equal contribution. Abstract: Transposable elements (TEs) represent a considerable fraction of eukaryotic genomes, thereby contributing to genome size, chromosomal rearrangements, and to the generation of new coding genes or regulatory elements. An increasing number of works have reported a link between the genomic abundance of TEs and the adaptation to specific environmental conditions. Diadromy represents a fascinating feature of fish, protagonists of migratory routes between marine and fresh- water for reproduction. In this work, we investigated the genomes of 24 fish species, including 15 teleosts with a migratory behaviour. The expected higher relative abundance of DNA transposons in ray-finned fish compared with the other fish groups was not confirmed by the analysis of the dataset considered. The relative contribution of different TE types in migratory ray-finned species did not show clear differences between oceanodromous and potamodromous fish. On the contrary, a remarkable relationship between migratory behaviour and the quantitative difference reported for short interspersed nuclear (retro)elements (SINEs) emerged from the comparison between anadro- mous and catadromous species, independently from their phylogenetic position. -
Impacts of Sharks on Coral Reef Ecosystems } Do Healthy Reefs Need
Impacts of sharks on coral reef ecosystems } Do healthy reefs need sharks? This is one of the most misunderstood questions in coral reef ecology. Shark populations are declining due to habitat loss, overfishing, and other stressors. It is important to understand how these losses could affect the rest of the ecosystem. Understanding the predator-prey interactions between herbivores and sharks is crucial for coral reef conservation. As top predators, sharks not only eat other fish, but they can also affect their behavior. In the presence of sharks, herbivorous fish may be concentrating their grazing to small, sheltered areas. Because these fish have to eat where they are safe from predators, there is more space to allow young coral to settle, grow, and thrive. In the absence of sharks, herbivorous fish may spread out their grazing randomly across large patches of algae, leaving few well-defined or cleared areas for corals to settle. Fortunately, Florida International University has just the place to explore these dynamic questions, a lab under the sea – Aquarius Reef Base. From September 7th to 14th, a mission at Aquarius Reef Base will combine sonar with baited remote underwater video surveys (BRUVs), an experiment the first of its kind to bring these technologies together. Researchers on this mission strive to understand the direct impact of shark presence on herbivorous fish behavior as well as the indirect impact of sharks on algae communities. Combining these technologies: • Provides a new way to study reef fish behavior • Carves the path forward for future ecological research • Offers insights that may lead to critical marine conservation outcomes Mission Overview: Dr. -
Adult and Larval Fish Assemblages in Front of Marine Biological Station, Hurghada, Red Sea, Egypt
INTERNATIONAL JOURNAL OF ENVIRONMENTAL SCIENCE AND ENGINEERING (IJESE) Vol. 4: 55- 65 (2013) http://www.pvamu.edu/texged Prairie View A&M University, Texas, USA Adult and larval reef fish communities in a coastal reef lagoon at Hurghada, Red Sea, Egypt. Mohamed A. Abu El-Regal Marine Science Department, Faculty of Science, Port Said University. ARTICLE INFO ABSTRACT Article History The aim of this study was to explore the composition of reef fish Received: Jan. 3, 2013 community in a coastal lagoon in Hurghada, Red Sea, Egypt. Accepted: March 9, 2013 Available online: Sept. 2013 Adult fishes were counted by visual censuses, whereas fish larvae _________________ were collected by 0.5 mm mesh plankton net. A total of 70 adult Keywords reef fish species and 41 larval fish species were collected. Only 16 Reef fishes. species of the recorded adults had their larvae, where as 26 species Fish larvae. were found only as larvae. It could be concluded that adult stages Red Sea. Hurghada. of the reef fish in the inshore areas are not fully represented by larval stages 1. INTRODUCTION The investigation of fish fauna and flora of the Red Sea has attracted the attention of scientists for very long time. The fish fauna received the greatest attention since the Swedish naturalist Peter Forsskal (1761-1762). Many efforts have been done to study and explore fish community structure in the area since the early staff of the Marine Biological Station in Hurghada. Gohar (1948,) and Gohar and Latif (1959), and Gohar and Mazhar (1964) have made extensive studies on the adult fish community in front of the station. -
Coral Reef Biological Criteria: Using the Clean Water Act to Protect a National Treasure
EPA/600/R-10/054 | July 2010 | www.epa.gov/ord Coral Reef Biological Criteria: Using the Clean Water Act to Protect a National Treasure Offi ce of Research and Development | National Health and Environmental Effects Research Laboratory EPA/600/R-10/054 July 2010 www.epa.gov/ord Coral Reef Biological Criteria Using the Clean Water Act to Protect a National Treasure by Patricia Bradley Leska S. Fore Atlantic Ecology Division Statistical Design NHEERL, ORD 136 NW 40th St. 33 East Quay Road Seattle, WA 98107 Key West, FL 33040 William Fisher Wayne Davis Gulf Ecology Division Environmental Analysis Division NHEERL, ORD Offi ce of Environmental Information 1 Sabine Island Drive 701 Mapes Road Gulf Breeze, FL 32561 Fort Meade, MD 20755 Contract No. EP-C-06-033 Work Assignment 3-11 Great Lakes Environmental Center, Inc Project Officer: Work Assignment Manager: Susan K. Jackson Wayne Davis Offi ce of Water Offi ce of Environmental Information Washington, DC 20460 Fort Meade, MD 20755 National Health and Environmental Effects Research Laboratory Offi ce of Research and Development Washington, DC 20460 Printed on chlorine free 100% recycled paper with 100% post-consumer fiber using vegetable-based ink. Notice and Disclaimer The U.S. Environmental Protection Agency through its Offi ce of Research and Development, Offi ce of Environmental Information, and Offi ce of Water funded and collaborated in the research described here under Contract EP-C-06-033, Work Assignment 3-11, to Great Lakes Environmental Center, Inc. It has been subject to the Agency’s peer and administrative review and has been approved for publication as an EPA document.