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Diptera: Calyptratae)
Systematic Entomology (2020), DOI: 10.1111/syen.12443 Protein-encoding ultraconserved elements provide a new phylogenomic perspective of Oestroidea flies (Diptera: Calyptratae) ELIANA BUENAVENTURA1,2 , MICHAEL W. LLOYD2,3,JUAN MANUEL PERILLALÓPEZ4, VANESSA L. GONZÁLEZ2, ARIANNA THOMAS-CABIANCA5 andTORSTEN DIKOW2 1Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Berlin, Germany, 2National Museum of Natural History, Smithsonian Institution, Washington, DC, U.S.A., 3The Jackson Laboratory, Bar Harbor, ME, U.S.A., 4Department of Biological Sciences, Wright State University, Dayton, OH, U.S.A. and 5Department of Environmental Science and Natural Resources, University of Alicante, Alicante, Spain Abstract. The diverse superfamily Oestroidea with more than 15 000 known species includes among others blow flies, flesh flies, bot flies and the diverse tachinid flies. Oestroidea exhibit strikingly divergent morphological and ecological traits, but even with a variety of data sources and inferences there is no consensus on the relationships among major Oestroidea lineages. Phylogenomic inferences derived from targeted enrichment of ultraconserved elements or UCEs have emerged as a promising method for resolving difficult phylogenetic problems at varying timescales. To reconstruct phylogenetic relationships among families of Oestroidea, we obtained UCE loci exclusively derived from the transcribed portion of the genome, making them suitable for larger and more integrative phylogenomic studies using other genomic and transcriptomic resources. We analysed datasets containing 37–2077 UCE loci from 98 representatives of all oestroid families (except Ulurumyiidae and Mystacinobiidae) and seven calyptrate outgroups, with a total concatenated aligned length between 10 and 550 Mb. About 35% of the sampled taxa consisted of museum specimens (2–92 years old), of which 85% resulted in successful UCE enrichment. -
2017 Report on the Haleakalā High Altitude Observatory Site
Haleakalā High Altitude Observatory Site Management Plan 2017 Annual Report Introduction to Management of the Haleakalā High Altitude Observatory Site The Haleakalā High Altitude Observatory Site (HO) Management Plan (MP) was approved by the Board of Land and Natural Resources (BLNR) on December 1, 2010. Condition #2 states: “Beginning in November 2012 the University will submit to DLNR an annual report summarizing any construction activities occurring at HO; Habitat Conservation Plans; Monitoring Plans for Invertebrates, Flora, and Fauna; Programmatic Agreements on Cultural Resources; Invasive Species Control Plans and other related plans, The Report should be brief but thorough. This report should also be presented to the Board of Land and Natural Resources for the first year, and every five years thereafter.” Therefore, this report summarizes activities that occurred under the MP from December 1, 2016 to November 30, 2017. The land use described in this report, on activities under the HO MP, qualifies as an identified use in the General Subzone and is consistent with the objectives of the General Subzone of the land. The objectives of the General Subzone (HAR 13-5-14) are to designate open space where specific conservation uses may not be defined, but where urban uses would be premature. The land use is consistent with astronomical research facilities for advanced studies of astronomy and atmospheric sciences. HO is located within a General Subzone of the State of Hawai’i Conservation District that has been set aside for observatory site purposes only. Identified applicable land uses in the General Subzone, include R-3 Astronomy Facilities and (D-1) Astronomy facilities under an approved management plan (HAR 13-5-25). -
ARTHROPODA Subphylum Hexapoda Protura, Springtails, Diplura, and Insects
NINE Phylum ARTHROPODA SUBPHYLUM HEXAPODA Protura, springtails, Diplura, and insects ROD P. MACFARLANE, PETER A. MADDISON, IAN G. ANDREW, JOCELYN A. BERRY, PETER M. JOHNS, ROBERT J. B. HOARE, MARIE-CLAUDE LARIVIÈRE, PENELOPE GREENSLADE, ROSA C. HENDERSON, COURTenaY N. SMITHERS, RicarDO L. PALMA, JOHN B. WARD, ROBERT L. C. PILGRIM, DaVID R. TOWNS, IAN McLELLAN, DAVID A. J. TEULON, TERRY R. HITCHINGS, VICTOR F. EASTOP, NICHOLAS A. MARTIN, MURRAY J. FLETCHER, MARLON A. W. STUFKENS, PAMELA J. DALE, Daniel BURCKHARDT, THOMAS R. BUCKLEY, STEVEN A. TREWICK defining feature of the Hexapoda, as the name suggests, is six legs. Also, the body comprises a head, thorax, and abdomen. The number A of abdominal segments varies, however; there are only six in the Collembola (springtails), 9–12 in the Protura, and 10 in the Diplura, whereas in all other hexapods there are strictly 11. Insects are now regarded as comprising only those hexapods with 11 abdominal segments. Whereas crustaceans are the dominant group of arthropods in the sea, hexapods prevail on land, in numbers and biomass. Altogether, the Hexapoda constitutes the most diverse group of animals – the estimated number of described species worldwide is just over 900,000, with the beetles (order Coleoptera) comprising more than a third of these. Today, the Hexapoda is considered to contain four classes – the Insecta, and the Protura, Collembola, and Diplura. The latter three classes were formerly allied with the insect orders Archaeognatha (jumping bristletails) and Thysanura (silverfish) as the insect subclass Apterygota (‘wingless’). The Apterygota is now regarded as an artificial assemblage (Bitsch & Bitsch 2000). -
Terry Whitworth 3707 96Th ST E, Tacoma, WA 98446
Terry Whitworth 3707 96th ST E, Tacoma, WA 98446 Washington State University E-mail: [email protected] or [email protected] Published in Proceedings of the Entomological Society of Washington Vol. 108 (3), 2006, pp 689–725 Websites blowflies.net and birdblowfly.com KEYS TO THE GENERA AND SPECIES OF BLOW FLIES (DIPTERA: CALLIPHORIDAE) OF AMERICA, NORTH OF MEXICO UPDATES AND EDITS AS OF SPRING 2017 Table of Contents Abstract .......................................................................................................................... 3 Introduction .................................................................................................................... 3 Materials and Methods ................................................................................................... 5 Separating families ....................................................................................................... 10 Key to subfamilies and genera of Calliphoridae ........................................................... 13 See Table 1 for page number for each species Table 1. Species in order they are discussed and comparison of names used in the current paper with names used by Hall (1948). Whitworth (2006) Hall (1948) Page Number Calliphorinae (18 species) .......................................................................................... 16 Bellardia bayeri Onesia townsendi ................................................... 18 Bellardia vulgaris Onesia bisetosa ..................................................... -
Testing the Accuracy of Vegetation-Based Ecoregions for Predicting the Species Composition of Blow Flies (Diptera: Calliphoridae)
Journal of Insect Science, (2021) 21(1): 6; 1–9 doi: 10.1093/jisesa/ieaa144 Research Testing the Accuracy of Vegetation-Based Ecoregions for Predicting the Species Composition of Blow Flies (Diptera: Calliphoridae) K. Ketzaly Munguía-Ortega,1 Eulogio López-Reyes,1 and F. Sara Ceccarelli2,3, 1Museo de Artrópodos, Departamento de Biología de la Conservación, Centro de Investigación Científica y de Educación Superior de Ensenada, Ensenada, Baja California, Mexico, 2Museo de Artrópodos, Departamento de Biología de la Conservación, CONACYT- Centro de Investigación Científica y de Educación Superior de Ensenada, Ensenada, Baja California, Mexico, and 3Corresponding author, e-mail: [email protected] Subject Editor: Philippe Usseglio-Polatera Received 25 June 2020; Editorial decision 5 December 2020 Abstract To properly define ecoregions, specific criteria such as geology, climate, or species composition (e.g., the presence of endemic species) must be taken into account to understand distribution patterns and resolve ecological biogeography questions. Since the studies on insects in Baja California are scarce, and no fine-scale ecoregions based on the region’s entomofauna is available, this study was designed to test whether the ecoregions based on vegetation can be used for insects, such as Calliphoridae. Nine collecting sites distributed along five ecoregions were selected, between latitudes 29.6° and 32.0°N. In each site, three baited traps were used to collect blow flies from August 2017 to June 2019 during summer, winter, and spring. A total of 30,307 individuals of blow flies distributed in six genera and 13 species were collected. The most abundant species were Cochliomyia macellaria (Fabricius), Phormia regina (Meigen), and Chrysomya rufifacies (Macquart). -
Genomic Platforms and Molecular Physiology of Insect Stress Tolerance
Genomic Platforms and Molecular Physiology of Insect Stress Tolerance DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Justin Peyton MS Graduate Program in Evolution, Ecology and Organismal Biology The Ohio State University 2015 Dissertation Committee: Professor David L. Denlinger Advisor Professor Zakee L. Sabree Professor Amanda A. Simcox Professor Joseph B. Williams Copyright by Justin Tyler Peyton 2015 Abstract As ectotherms with high surface area to volume ratio, insects are particularly susceptible to desiccation and low temperature stress. In this dissertation, I examine the molecular underpinnings of two facets of these stresses: rapid cold hardening and cryoprotective dehydration. Rapid cold hardening (RCH) is an insect’s ability to prepare for cold stress when that stress is preceded by an intermediate temperature for minutes to hours. In order to gain a better understanding of cold shock, recovery from cold shock, and RCH in Sarcophaga bullata I examine the transcriptome with microarray and the metabolome with gas chromatography coupled with mass spectrometry (GCMS) in response to these treatments. I found that RCH has very little effect on the transcriptome, but results in a shift from aerobic metabolism to glycolysis/gluconeogenesis during RCH and preserved metabolic homeostasis during recovery. In cryoprotective dehydration (CD), a moisture gradient is established between external ice and the moisture in the body of an insect. As temperatures decline, the external ice crystals grow, drawing in more moisture which dehydrates the insect causing its melting point to track the ambient temperature. To gain a better understanding of CD and dehydration in Belgica antarctica I explore the transcriptome with RNA sequencing ii and the metabolome with GCMS. -
Diptera: Sarcophagidae) and Its Phylogenetic Implications
First mitogenome for the subfamily Miltogramminae (Diptera: Sarcophagidae) and its phylogenetic implications Yan, Liping; Zhang, Ming; Gao, Yunyun; Pape, Thomas; Zhang, Dong Published in: European Journal of Entomology DOI: 10.14411/eje.2017.054 Publication date: 2017 Document version Publisher's PDF, also known as Version of record Document license: CC BY Citation for published version (APA): Yan, L., Zhang, M., Gao, Y., Pape, T., & Zhang, D. (2017). First mitogenome for the subfamily Miltogramminae (Diptera: Sarcophagidae) and its phylogenetic implications. European Journal of Entomology, 114, 422-429. https://doi.org/10.14411/eje.2017.054 Download date: 24. Sep. 2021 EUROPEAN JOURNAL OF ENTOMOLOGYENTOMOLOGY ISSN (online): 1802-8829 Eur. J. Entomol. 114: 422–429, 2017 http://www.eje.cz doi: 10.14411/eje.2017.054 ORIGINAL ARTICLE First mitogenome for the subfamily Miltogramminae (Diptera: Sarcophagidae) and its phylogenetic implications LIPING YAN 1, 2, MING ZHANG 1, YUNYUN GAO 1, THOMAS PAPE 2 and DONG ZHANG 1, * 1 School of Nature Conservation, Beijing Forestry University, Beijing, China; e-mails: [email protected], [email protected], [email protected], [email protected] 2 Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark; e-mail: [email protected] Key words. Diptera, Calyptratae, Sarcophagidae, Miltogramminae, mitogenome, fl esh fl y, phylogeny Abstract. The mitochondrial genome of Mesomelena mesomelaena (Loew, 1848) is the fi rst to be sequenced in the fl esh fl y subfamily Miltogramminae (Diptera: Sarcophagidae). The 14,559 bp mitogenome contains 37 typical metazoan mitochondrial genes: 13 protein-coding genes, two ribosomal RNA genes and 22 transfer RNA genes, with the same locations as in the insect ground plan. -
Diptera: Calliphoridae)1
Pacific Insects 13 (1) : 141-204 15 June 1971 THE TRIBE CALLIPHORINI FROM AUSTRALIAN AND ORIENTAL REGIONS II. CALLIPHORA-GROUP (Diptera: Calliphoridae)1 By Hiromu Kurahashi Abstract: The Australian and Oriental Calliphora-group consists of the following 5 genera: Xenocalliphora Malloch (6 spp.), Aldrichina Townsend (1 sp.), T Heer atopy ga Rohdendorf (1 sp.), Eucalliphora Townsend (1 sp.) and Calliphora Rob.-Desvoidy (37 spp.). The genus Calliphora Rob.-Desvoidy has a number of members with a greater diversity of form and coloration than do those known from any other faunal region, and it is subdivided into the 5 subgenera: Neocalliphora Brauer & Bergenstamm, Cal liphora s. str., Paracalliphora Townsend, Papuocalliphora n. subgen, and Australocalli- phora n. subgen, in the present paper. The following forms are described as new: Calliphora pseudovomitoria, Paracalliphora papuensis, P. kermadeca, P. norfolka, P. augur neocaledonensis, P. espiritusanta, P. porphyrina, P. gressitti, P. rufipes kermadecensis, P. rufipes tasmanensis, P. rufipes tahitiensis, Australocalliphora onesioidea and A. tasmaniae, This second study in the series on Australian and Oriental Calliphorini presents a revision of the Calliphora-group based on a much greater amount of material than the early authors had. Most of the specimens examined were available in the Department of Entomology, Bernice P. Bishop Museum, Honolulu. I have raised the number of species to 46 which belong to 5 genera: Xenocalliphora Malloch, Aldrichina Townsend, Triceratopyga Rohdendorf, Eucalliphora Townsend and Calliphora Rob.-Desvoidy. The former 4 are either monobasic or with few species in contrast with the 38 species of the last genus. They have several plesiomorphous characters, i.e., dichoptic condition of eyes in <^, in spite of a more or less high degree of specialization with respect to some features such as hypopygium. -
Table of Contents
SPECIAL ISSUE VOLUME 12 NUMBER- 4 AUGUST 2019 Print ISSN: 0974-6455 Online ISSN: 2321-4007 BBRC CODEN BBRCBA www.bbrc.in Bioscience Biotechnology University Grants Commission (UGC) Research Communications New Delhi, India Approved Journal National Conference Special Issue Recent Trends in Life Sciences for Sustainable Development-RTLSSD-2019’ An International Peer Reviewed Open Access Journal for Rapid Publication Published By: Society For Science and Nature Bhopal, Post Box 78, GPO, 462001 India Indexed by Thomson Reuters, Now Clarivate Analytics USA ISI ESCI SJIF 2018=4.186 Online Content Available: Every 3 Months at www.bbrc.in Registered with the Registrar of Newspapers for India under Reg. No. 498/2007 Bioscience Biotechnology Research Communications SPECIAL ISSUE VOL 12 NO (4) AUG 2019 Editors Communication I Insect Pest Control with the Help of Spiders in the Agricultural Fields of Akot Tahsil, 01-02 District Akola, Maharashtra State, India Amit B. Vairale A Statistical Approach to Find Correlation Among Various Morphological 03-11 Descriptors in Bamboo Species Ashiq Hussain Khanday and Prashant Ashokrao Gawande Studies on Impact of Physico Chemical Factors on the Seasonal Distribution of 12-15 Zooplankton in Kapileshwar Dam, Ashti, Dist. Wardha Awate P.J Seasonal Variation in Body Moisture Content of Wallago Attu 16-20 (Siluridae: Siluriformes) Babare Rupali Phytoplanktons of Washim Region (M.S.) India 21-24 Bargi L.A., Golande P.K. and S.D. Rathod Study of Human and Leopard Conflict a Survey in Human Dominated 25-29 Areas of Western Maharashtra Gantaloo Uma Sukaiya Exposure of Chlorpyrifos on Some Biochemical Constituents in Liver and Kidney of Fresh 30-32 Water Fish, Channa punctatus Feroz Ahmad Dar and Pratibha H. -
Use of DNA Sequences to Identify Forensically Important Fly Species in the Coastal Region of Central California (Santa Clara County)
San Jose State University SJSU ScholarWorks Master's Theses Master's Theses and Graduate Research Summer 2013 Use of DNA Sequences to Identify Forensically Important Fly Species in the Coastal Region of Central California (Santa Clara County) Angela T. Nakano San Jose State University Follow this and additional works at: https://scholarworks.sjsu.edu/etd_theses Recommended Citation Nakano, Angela T., "Use of DNA Sequences to Identify Forensically Important Fly Species in the Coastal Region of Central California (Santa Clara County)" (2013). Master's Theses. 4357. DOI: https://doi.org/10.31979/etd.8rxw-2hhh https://scholarworks.sjsu.edu/etd_theses/4357 This Thesis is brought to you for free and open access by the Master's Theses and Graduate Research at SJSU ScholarWorks. It has been accepted for inclusion in Master's Theses by an authorized administrator of SJSU ScholarWorks. For more information, please contact [email protected]. USE OF DNA SEQUENCES TO IDENTIFY FORENSICALLY IMPORTANT FLY SPECIES IN THE COASTAL REGION OF CENTRAL CALIFORNIA (SANTA CLARA COUNTY) A Thesis Presented to The Faculty of the Department of Biological Sciences San José State University In Partial Fulfillment of the Requirements for the Degree Master of Science by Angela T. Nakano August 2013 ©2013 Angela T. Nakano ALL RIGHTS RESERVED The Designated Thesis Committee Approves the Thesis Titled USE OF DNA SEQUENCES TO IDENTIFY FORENSICALLY IMPORTANT FLY SPECIES IN THE COASTAL REGION OF CENTRAL CALIFORNIA (SANTA CLARA COUNTY) by Angela T. Nakano APPROVED FOR THE DEPARTMENT OF BIOLOGICAL SCIENCES SAN JOSÉ STATE UNIVERSITY August 2013 Dr. Jeffrey Honda Department of Biological Sciences Dr. -
The Flesh Fly Sarcophaga
Journal of Forensic Science & Criminology Volume 2 | Issue 1 ISSN: 2348-9804 Research Article Open Access The Flesh Fly Sarcophaga (Liopygia) crassipalpis Macquart 1839 as an Invader of a Corpse in Calabria (Southern Italy) Bonacci T*1, Greco S1, Cavalcanti B2, Brandmayr P1 and Vercillo V2 1Department DiBEST, University of Calabria, 87036 – Rende (CS), Italy 2Azienda Sanitaria Provinciale di Cosenza, Sezione di Medicina Legale, 87100 – Cosenza, Italy *Corresponding author: Bonacci T, Department DiBEST, University of Calabria, 87036 – Rende (CS), Italy, E-mail: [email protected] Citation: Bonacci T, Greco S, Cavalcanti B, Brandmayr P, Vercillo V (2014) The Flesh Fly Sarcophaga (Li- opygia) crassipalpis Macquart 1839 as an Invader of a Corpse in Calabria (Southern Italy). J Forensic Sci Criminol 2(1): 104. doi: 10.15744/2348-9804.1.404 Received Date: December 03, 2013 Accepted Date: February 10, 2014 Published Date: February 12, 2014 Abstract We present an indoor forensic case that occurred in spring 2013 in Cosenza (southern Italy). The entomological evidence col- lected at the scene consisted of Calliphoridae (Calliphora vicina, Lucilia sericata), Sarcophagidae (Sarcophaga crassipalpis), Fanniidae (Fannia scalaris) and Muscidae (Hydrotaea ignava). The minimum Post Mortem Interval (mPMI) was calculated by relating the entomological evidence to data available for Diptera species in the area and to our knowledge of the development of flies used as forensic indicators in Calabria. We report S. crassipalpis as a corpse invader for the first time in Italy. Keywords: Forensic case; Flies; S. crassipalpis; mPMI; Southern Italy Introduction The first aim of forensic entomology is to help investigators estimate the time of death. -
Transposable Element Content in Non-Model Insect Genomes
Mississippi State University Scholars Junction Theses and Dissertations Theses and Dissertations 1-1-2014 Transposable Element Content in Non-Model Insect Genomes Christine A. Lavoie Follow this and additional works at: https://scholarsjunction.msstate.edu/td Recommended Citation Lavoie, Christine A., "Transposable Element Content in Non-Model Insect Genomes" (2014). Theses and Dissertations. 4781. https://scholarsjunction.msstate.edu/td/4781 This Graduate Thesis - Open Access is brought to you for free and open access by the Theses and Dissertations at Scholars Junction. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of Scholars Junction. For more information, please contact [email protected]. Automated Template B: Created by James Nail 2011V2.1 Transposable element content in non-model insect genomes By Christine A. Lavoie A Thesis Submitted to the Faculty of Mississippi State University in Partial Fulfillment of the Requirements for the Degree of Master of Science in Agricultural Life Sciences in the Department of Biochemistry, Molecular Biology, Entomology, and Plant Pathology Mississippi State, Mississippi May 2014 Copyright by Christine A. Lavoie 2014 Transposable element content in non-model insect genomes By Christine A. Lavoie Approved: ____________________________________ David A. Ray (Major Professor) ____________________________________ Brian A. Counterman (Co-Major Professor) ____________________________________ Scott T. Willard (Committee Member) ____________________________________