Transposable Element Content in Non-Model Insect Genomes
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Diptera: Calyptratae)
Systematic Entomology (2020), DOI: 10.1111/syen.12443 Protein-encoding ultraconserved elements provide a new phylogenomic perspective of Oestroidea flies (Diptera: Calyptratae) ELIANA BUENAVENTURA1,2 , MICHAEL W. LLOYD2,3,JUAN MANUEL PERILLALÓPEZ4, VANESSA L. GONZÁLEZ2, ARIANNA THOMAS-CABIANCA5 andTORSTEN DIKOW2 1Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Berlin, Germany, 2National Museum of Natural History, Smithsonian Institution, Washington, DC, U.S.A., 3The Jackson Laboratory, Bar Harbor, ME, U.S.A., 4Department of Biological Sciences, Wright State University, Dayton, OH, U.S.A. and 5Department of Environmental Science and Natural Resources, University of Alicante, Alicante, Spain Abstract. The diverse superfamily Oestroidea with more than 15 000 known species includes among others blow flies, flesh flies, bot flies and the diverse tachinid flies. Oestroidea exhibit strikingly divergent morphological and ecological traits, but even with a variety of data sources and inferences there is no consensus on the relationships among major Oestroidea lineages. Phylogenomic inferences derived from targeted enrichment of ultraconserved elements or UCEs have emerged as a promising method for resolving difficult phylogenetic problems at varying timescales. To reconstruct phylogenetic relationships among families of Oestroidea, we obtained UCE loci exclusively derived from the transcribed portion of the genome, making them suitable for larger and more integrative phylogenomic studies using other genomic and transcriptomic resources. We analysed datasets containing 37–2077 UCE loci from 98 representatives of all oestroid families (except Ulurumyiidae and Mystacinobiidae) and seven calyptrate outgroups, with a total concatenated aligned length between 10 and 550 Mb. About 35% of the sampled taxa consisted of museum specimens (2–92 years old), of which 85% resulted in successful UCE enrichment. -
Lepidoptera: Papilionidae)
Zootaxa 3786 (4): 469–482 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3786.4.5 http://zoobank.org/urn:lsid:zoobank.org:pub:8EC12B47-B992-4B7B-BBF0-BB0344B26BE3 Discovery of a third species of Lamproptera Gray, 1832 (Lepidoptera: Papilionidae) SHAO-JI HU1,5, XIN ZHANG2, ADAM M. COTTON3 & HUI YE4 1Laboratory of Biological Invasion and Ecosecurity, Yunnan University, Kunming, 650091, China. E-mail: [email protected] 2Laboratory for Animal Genetic Diversity and Evolution of Higher Education in Yunnan Province, Yunnan University, Kunming, 650091, China. E-mail: [email protected] 386/2 Moo 5, Tambon Nong Kwai, Hang Dong, Chiang Mai, Thailand. E-mail: [email protected] 4Laboratory Supervisor, Laboratory of Biological Invasion and Ecosecurity, Yunnan University, Kunming, 650091, China. E-mail: [email protected] 5Corresponding author Abstract A newly discovered, third species of the genus Lamproptera (Lepidoptera: Papilionidae) is described, 183 years after the second currently recognised species was first named. Lamproptera paracurius Hu, Zhang & Cotton sp. n., from N.E. Yun- nan, China, is based on marked differences in external morphology and male genital structure. The species is confirmed as a member of the genus, and detailed comparisons are made with other taxa included in the genus. Keys to Lamproptera species based on external characters and male genitalia are included. Key words: Leptocircini, new species, Dongchuan, Yunnan, China Introduction The dragontails, genus Lamproptera Gray, 1832 (Lepidoptera: Papilionidae: Leptocircini), are the smallest papilionid butterflies found in tropical Asia (Tsukada & Nishiyama 1980b). -
ARTHROPODA Subphylum Hexapoda Protura, Springtails, Diplura, and Insects
NINE Phylum ARTHROPODA SUBPHYLUM HEXAPODA Protura, springtails, Diplura, and insects ROD P. MACFARLANE, PETER A. MADDISON, IAN G. ANDREW, JOCELYN A. BERRY, PETER M. JOHNS, ROBERT J. B. HOARE, MARIE-CLAUDE LARIVIÈRE, PENELOPE GREENSLADE, ROSA C. HENDERSON, COURTenaY N. SMITHERS, RicarDO L. PALMA, JOHN B. WARD, ROBERT L. C. PILGRIM, DaVID R. TOWNS, IAN McLELLAN, DAVID A. J. TEULON, TERRY R. HITCHINGS, VICTOR F. EASTOP, NICHOLAS A. MARTIN, MURRAY J. FLETCHER, MARLON A. W. STUFKENS, PAMELA J. DALE, Daniel BURCKHARDT, THOMAS R. BUCKLEY, STEVEN A. TREWICK defining feature of the Hexapoda, as the name suggests, is six legs. Also, the body comprises a head, thorax, and abdomen. The number A of abdominal segments varies, however; there are only six in the Collembola (springtails), 9–12 in the Protura, and 10 in the Diplura, whereas in all other hexapods there are strictly 11. Insects are now regarded as comprising only those hexapods with 11 abdominal segments. Whereas crustaceans are the dominant group of arthropods in the sea, hexapods prevail on land, in numbers and biomass. Altogether, the Hexapoda constitutes the most diverse group of animals – the estimated number of described species worldwide is just over 900,000, with the beetles (order Coleoptera) comprising more than a third of these. Today, the Hexapoda is considered to contain four classes – the Insecta, and the Protura, Collembola, and Diplura. The latter three classes were formerly allied with the insect orders Archaeognatha (jumping bristletails) and Thysanura (silverfish) as the insect subclass Apterygota (‘wingless’). The Apterygota is now regarded as an artificial assemblage (Bitsch & Bitsch 2000). -
Whole Genome Shotgun Phylogenomics Resolves the Pattern
Whole genome shotgun phylogenomics resolves the pattern and timing of swallowtail butterfly evolution Rémi Allio, Celine Scornavacca, Benoit Nabholz, Anne-Laure Clamens, Felix Sperling, Fabien Condamine To cite this version: Rémi Allio, Celine Scornavacca, Benoit Nabholz, Anne-Laure Clamens, Felix Sperling, et al.. Whole genome shotgun phylogenomics resolves the pattern and timing of swallowtail butterfly evolution. Systematic Biology, Oxford University Press (OUP), 2020, 69 (1), pp.38-60. 10.1093/sysbio/syz030. hal-02125214 HAL Id: hal-02125214 https://hal.archives-ouvertes.fr/hal-02125214 Submitted on 10 May 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Running head Shotgun phylogenomics and molecular dating Title proposal Downloaded from https://academic.oup.com/sysbio/advance-article-abstract/doi/10.1093/sysbio/syz030/5486398 by guest on 07 May 2019 Whole genome shotgun phylogenomics resolves the pattern and timing of swallowtail butterfly evolution Authors Rémi Allio1*, Céline Scornavacca1,2, Benoit Nabholz1, Anne-Laure Clamens3,4, Felix -
Genomic Platforms and Molecular Physiology of Insect Stress Tolerance
Genomic Platforms and Molecular Physiology of Insect Stress Tolerance DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Justin Peyton MS Graduate Program in Evolution, Ecology and Organismal Biology The Ohio State University 2015 Dissertation Committee: Professor David L. Denlinger Advisor Professor Zakee L. Sabree Professor Amanda A. Simcox Professor Joseph B. Williams Copyright by Justin Tyler Peyton 2015 Abstract As ectotherms with high surface area to volume ratio, insects are particularly susceptible to desiccation and low temperature stress. In this dissertation, I examine the molecular underpinnings of two facets of these stresses: rapid cold hardening and cryoprotective dehydration. Rapid cold hardening (RCH) is an insect’s ability to prepare for cold stress when that stress is preceded by an intermediate temperature for minutes to hours. In order to gain a better understanding of cold shock, recovery from cold shock, and RCH in Sarcophaga bullata I examine the transcriptome with microarray and the metabolome with gas chromatography coupled with mass spectrometry (GCMS) in response to these treatments. I found that RCH has very little effect on the transcriptome, but results in a shift from aerobic metabolism to glycolysis/gluconeogenesis during RCH and preserved metabolic homeostasis during recovery. In cryoprotective dehydration (CD), a moisture gradient is established between external ice and the moisture in the body of an insect. As temperatures decline, the external ice crystals grow, drawing in more moisture which dehydrates the insect causing its melting point to track the ambient temperature. To gain a better understanding of CD and dehydration in Belgica antarctica I explore the transcriptome with RNA sequencing ii and the metabolome with GCMS. -
Diptera: Sarcophagidae) and Its Phylogenetic Implications
First mitogenome for the subfamily Miltogramminae (Diptera: Sarcophagidae) and its phylogenetic implications Yan, Liping; Zhang, Ming; Gao, Yunyun; Pape, Thomas; Zhang, Dong Published in: European Journal of Entomology DOI: 10.14411/eje.2017.054 Publication date: 2017 Document version Publisher's PDF, also known as Version of record Document license: CC BY Citation for published version (APA): Yan, L., Zhang, M., Gao, Y., Pape, T., & Zhang, D. (2017). First mitogenome for the subfamily Miltogramminae (Diptera: Sarcophagidae) and its phylogenetic implications. European Journal of Entomology, 114, 422-429. https://doi.org/10.14411/eje.2017.054 Download date: 24. Sep. 2021 EUROPEAN JOURNAL OF ENTOMOLOGYENTOMOLOGY ISSN (online): 1802-8829 Eur. J. Entomol. 114: 422–429, 2017 http://www.eje.cz doi: 10.14411/eje.2017.054 ORIGINAL ARTICLE First mitogenome for the subfamily Miltogramminae (Diptera: Sarcophagidae) and its phylogenetic implications LIPING YAN 1, 2, MING ZHANG 1, YUNYUN GAO 1, THOMAS PAPE 2 and DONG ZHANG 1, * 1 School of Nature Conservation, Beijing Forestry University, Beijing, China; e-mails: [email protected], [email protected], [email protected], [email protected] 2 Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark; e-mail: [email protected] Key words. Diptera, Calyptratae, Sarcophagidae, Miltogramminae, mitogenome, fl esh fl y, phylogeny Abstract. The mitochondrial genome of Mesomelena mesomelaena (Loew, 1848) is the fi rst to be sequenced in the fl esh fl y subfamily Miltogramminae (Diptera: Sarcophagidae). The 14,559 bp mitogenome contains 37 typical metazoan mitochondrial genes: 13 protein-coding genes, two ribosomal RNA genes and 22 transfer RNA genes, with the same locations as in the insect ground plan. -
Table of Contents
SPECIAL ISSUE VOLUME 12 NUMBER- 4 AUGUST 2019 Print ISSN: 0974-6455 Online ISSN: 2321-4007 BBRC CODEN BBRCBA www.bbrc.in Bioscience Biotechnology University Grants Commission (UGC) Research Communications New Delhi, India Approved Journal National Conference Special Issue Recent Trends in Life Sciences for Sustainable Development-RTLSSD-2019’ An International Peer Reviewed Open Access Journal for Rapid Publication Published By: Society For Science and Nature Bhopal, Post Box 78, GPO, 462001 India Indexed by Thomson Reuters, Now Clarivate Analytics USA ISI ESCI SJIF 2018=4.186 Online Content Available: Every 3 Months at www.bbrc.in Registered with the Registrar of Newspapers for India under Reg. No. 498/2007 Bioscience Biotechnology Research Communications SPECIAL ISSUE VOL 12 NO (4) AUG 2019 Editors Communication I Insect Pest Control with the Help of Spiders in the Agricultural Fields of Akot Tahsil, 01-02 District Akola, Maharashtra State, India Amit B. Vairale A Statistical Approach to Find Correlation Among Various Morphological 03-11 Descriptors in Bamboo Species Ashiq Hussain Khanday and Prashant Ashokrao Gawande Studies on Impact of Physico Chemical Factors on the Seasonal Distribution of 12-15 Zooplankton in Kapileshwar Dam, Ashti, Dist. Wardha Awate P.J Seasonal Variation in Body Moisture Content of Wallago Attu 16-20 (Siluridae: Siluriformes) Babare Rupali Phytoplanktons of Washim Region (M.S.) India 21-24 Bargi L.A., Golande P.K. and S.D. Rathod Study of Human and Leopard Conflict a Survey in Human Dominated 25-29 Areas of Western Maharashtra Gantaloo Uma Sukaiya Exposure of Chlorpyrifos on Some Biochemical Constituents in Liver and Kidney of Fresh 30-32 Water Fish, Channa punctatus Feroz Ahmad Dar and Pratibha H. -
Altitudinal Distribution of Papilionidae Butterflies Along with Their Larval Food Plants in the East Himalayan Landscape of West Bengal, India
Journal of Biosciences and Medicines, 2014, 2, 1-8 Published Online March 2014 in SciRes. http://www.scirp.org/journal/jbm http://dx.doi.org/10.4236/jbm.2014.21001 Altitudinal Distribution of Papilionidae Butterflies along with Their Larval Food Plants in the East Himalayan Landscape of West Bengal, India Narayan Ghorai, Panchali Sengupta Department of Zoology, West Bengal State University, Barasat, Kolkata, West Bengal, India Email: [email protected], [email protected] Received October 2013 Abstract The altitudinal distribution of Papilionidae butterflies across the East Himalayan Landscape of West Bengal, India is presented here. 26 butterfly species are known to occur across 11 altitudinal belts. Species Richness (R) and Species Diversity (H′) are said to be highest between 1200 - 1400 masl (meters above sea level). In contrast, lowest values of Species Richness and Species Diversity occur at the highest altitude of 3000 masl and above. Maximum number of individuals occurs be- tween 900 - 1100 masl while the minimum number of individuals was present at the highest alti- tude of 3000 masl or above. 35 species of plants belonging to 6 families served as the larval food plant of these butterflies. Thus the presence of suitable larval host plants probably governs the al- titudinal distribution of these papilionid species of butterflies. 30.77% of butterfly species are strictly monophagous in nature. Keywords Altitudinal Distribution; Papilionidae; Himalayan Landscape; Species Richness; Species Diversity; Larval Food Plant 1. Introduction The Himalayan range forms an arc between north-west to south-east, across the northern boundary of the Indian subcontinent. Here, Himalayas mainly refers to the region from Kashmir to Arunachal Pradesh, within Indian political boundaries. -
The Flesh Fly Sarcophaga
Journal of Forensic Science & Criminology Volume 2 | Issue 1 ISSN: 2348-9804 Research Article Open Access The Flesh Fly Sarcophaga (Liopygia) crassipalpis Macquart 1839 as an Invader of a Corpse in Calabria (Southern Italy) Bonacci T*1, Greco S1, Cavalcanti B2, Brandmayr P1 and Vercillo V2 1Department DiBEST, University of Calabria, 87036 – Rende (CS), Italy 2Azienda Sanitaria Provinciale di Cosenza, Sezione di Medicina Legale, 87100 – Cosenza, Italy *Corresponding author: Bonacci T, Department DiBEST, University of Calabria, 87036 – Rende (CS), Italy, E-mail: [email protected] Citation: Bonacci T, Greco S, Cavalcanti B, Brandmayr P, Vercillo V (2014) The Flesh Fly Sarcophaga (Li- opygia) crassipalpis Macquart 1839 as an Invader of a Corpse in Calabria (Southern Italy). J Forensic Sci Criminol 2(1): 104. doi: 10.15744/2348-9804.1.404 Received Date: December 03, 2013 Accepted Date: February 10, 2014 Published Date: February 12, 2014 Abstract We present an indoor forensic case that occurred in spring 2013 in Cosenza (southern Italy). The entomological evidence col- lected at the scene consisted of Calliphoridae (Calliphora vicina, Lucilia sericata), Sarcophagidae (Sarcophaga crassipalpis), Fanniidae (Fannia scalaris) and Muscidae (Hydrotaea ignava). The minimum Post Mortem Interval (mPMI) was calculated by relating the entomological evidence to data available for Diptera species in the area and to our knowledge of the development of flies used as forensic indicators in Calabria. We report S. crassipalpis as a corpse invader for the first time in Italy. Keywords: Forensic case; Flies; S. crassipalpis; mPMI; Southern Italy Introduction The first aim of forensic entomology is to help investigators estimate the time of death. -
(Insecta, Diptera, Sarcophagidae). - 1997
4)L ©Zoologische Staatssammlung München;download: http://www.biodiversitylibrary.org/; www.biologiezentrum.at \ 57Cls ^üniilTifiiiiiiii] miffit^iilllllliiiiülr SPIXIANA. |H, Zeitschrift für Zoologie ,ni|^S SPIXIANA • Supplement 24 • München, 15. Oktober 1997 • ISSN 0177-7424 • ISBN 3-931516-24-5 ©Zoologische Staatssammlung München;download: http://www.biodiversitylibrary.org/; www.biologiezentrum.at ©Zoologische Staatssammlung München;download: http://www.biodiversitylibrary.org/; www.biologiezentrum.at The Flesh-Flies of Central Europe (Insecta, Diptera, Sarcophagidae) Dalibor Povolny & Yuriy Verves ©Zoologische Staatssammlung München;download:SPIXIAMA http://www.biodiversitylibrary.org/; www.biologiezentrum.at ZEITSCHRIFT FÜR ZOOLOGIE herausgegeben von der ZOOLOGISCHEN STAATSSAMMLUNG MÜNCHEN SPIXIANA bringt Originalarbeiten aus dem Gesamtgebiet der Zoologischen Systematik mit Schwerpunkten in Morphologie, Phylogenie, Tiergeographie und Ökologie. Manuskripte werden in Deutsch, Englisch oder Französisch angenommen. Pro Jahr erscheint ein Band zu drei Heften. Umfangreiche Beiträge können in Supplementbänden herausgegeben werden. SPIXIANA publishes original papers on Zoological Systematics, with emphasis on Morphology, Phylogeny, Zoogeography and Ecology. Manuscripts will be accepted in German, English or French. A volume of three issues will be published annually. Extensive contributions may be edited in Supplement volumes. Redaktion - Editor-in-chief M. BAEHR Fotoarbeiten: M. MÜLLER Manuskripte, Korrekturen und Besprechungsexemplare Manuscripts, -
Cornell University Insect Collection Papilionidae
! ! ! Cornell University Insect Collection Papilionidae Ana Paula dos Santos de Carvalho Determined species: 396 Updated: August, 2015 Subfamily Tribe Genus Species Author Zoogeography Baroniinae Baronia brevicornis ssp. Salvin NEA brevicornis brevicornis Hoffmann NEA Parnassiinae Parnassiini Archon apollinus ssp. (Herbst) PAL (Staudinger & apollinus amasina Rebel) PAL apollinus bellargus (Staudinger) PAL Hypermenestra helios ssp. (Nickerl) PAL Parnassius apollo ssp. (Linnaeus) PAL apollo agyiens Fruhstorfer PAL apollo agyllus Fruhstorfer PAL apollo alemanicus Fruhstorfer PAL apollo araganicus Bryk PAL apollo bellarius Fruhstorfer PAL apollo bosniensis Stichel PAL Rebel & apollo brittingeri Rogenhofer PAL apollo caloriferus Fruhstorfer PAL apollo candidus Verity PAL apollo carinthicus Stichel PAL Rebel & apollo carpathicus Rogenhofer PAL apollo claudius Belling PAL Rebel & apollo eperjes Rogenhofer PAL apollo eremita Belling PAL apollo escalarae Rothschild PAL apollo franconicus PAL apollo geminus Schawerda PAL apollo heliophilus Fruhstorfer PAL apollo interversus Bryk PAL apollo italicus Oberthür PAL apollo julianus Stauder PAL apollo leovigidus Fruhstorfer PAL Rebel & apollo liburnicus Rogenhofer PAL apollo lioranus Fruhstorfer PAL apollo marcianus Pagenstecher PAL apollo melliculus Stichel PAL apollo meridionalis Pagenstecher PAL apollo merzbacheri Fruhstorfer PAL apollo nevadensis Oberthür PAL apollo nivatus Fruhstorfer PAL apollo omotimoius Fruhstorfer PAL apollo piedemontanus Fruhstorfer PAL apollo provincialis Kheil PAL apollo pumilus Stichel PAL apollo pyrenaica Harcourt-Bath PAL apollo rubidus Fruhstorfer PAL apollo suevicus Pagenstecher PAL apollo sztrecsnoensis Pax PAL apollo uralicus Bryk PAL apollo valderiensis Verity PAL apollo valesiacus Fruhstorfer PAL apollo venustus Stichel PAL apollo vinningensis Stichel PAL apollo wenzeli Bryk PAL apollonius ssp. (Eversmann) PAL bremeri ssp. Bremer PAL clodius ssp. Ménétriés NEA clodius baldur Edwards NEA clodius claudianus Stichel NEA clodius menestriesii Edwards NEA delphius (Eversmann) PAL epaphus ssp. -
1. Cold Bardiness
APPENDIX A: Number of species and higher taxa from which each of the physiological variables was examined. 1. Cold bardiness Order Family Genus Species Blattodea 3 4 5 Coleoptera 27 115 151 Dermaptera 1 I 1 Diptera 19 41 84 He miptera 14 38 51 Hymenoptera 17 34 59 lsoptera 1 2 2 Lepidoptera 22 72 85 Mecoptera 1 1 2 Neuroptera 1 1 1 Orthoptera 4 17 19 Plecoptera 1 1 1 Siphonaptera 1 I 1 Thysanoptera 1 1 2 Total= 14 113 329 465 2. Upper lethal temperature Order Family Genus Species Anoplura 1 1 1 Blattodea 4 10 14 Coleoptera 10 54 88 Dermaptera 1 I 1 Di ptera 10 23 65 Hemiptera 7 11 11 Hymenoptera 10 37 85 Isoptera 3 7 10 Lepidoptera 9 16 19 Neuroptera 1 1 1 Odonata 1 1 1 Orthoptera 4 9 10 Siphonaptera 1 1 1 Total = 13 62 172 307 \22 3. Desiccation resistance Order Family Genus Species Blattodea 4 10 15 Coleoptera 15 117 191 Dermaptera I 1 1 Diptera 12 14 30 Hemiptera 5 5 5 Hymenoptera 7 19 41 Isoptera 2 5 21 Lepidoptera 9 14 16 Orthoptera 8 33 40 Plecoptera 1 I I Siphonaptera 1 1 1 Thysanura 1 I I Total = 12 66 221 363 4. Development Order Family Genus Species B lattodea 2 2 2 Coleoptera 21 84 132 Dermaptera 2 2 2 D iptera 22 72 116 Ephemenoptera 3 3 5 Hemiptera 19 65 90 Hymenoj)tera 18 65 89 Isoptera I 1 1 Lepidoptera 26 82 113 Manitodea 1 1 I Neuroptera 2 4 13 Odonata 1 1 3 Orthoptera 5 10 10 Plecoptera 4 6 7 Siphonaptera 1 2 2 Thysanoptera 2 3 5 Total = 16 125 401 591 123 5.