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United States Patent (10 ) Patent No.: US 10,709,151 B2 Ulmasov Et Al

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United States Patent (10 ) Patent No.: US 10,709,151 B2 Ulmasov Et Al US010709151B2 United States Patent (10 ) Patent No.: US 10,709,151 B2 Ulmasov et al. (45 ) Date of Patent : Jul. 14 , 2020 ( 54 ) LOW FIBER PENNYCRESS MEAL AND WO 20090148336 A1 12/2009 METHODS OF MAKING WO 2010002984 A1 1/2010 WO 2016055838 Al 3/2019 (71 ) Applicants : COVERCRESS INC. , St. Louis , MO (US ) ; Board of Trustees of Illinois OTHER PUBLICATIONS State University , Normal , IL (US ) ; Alhotan et al , 2017 , Poultry Science , 96 :2281-2293 . * Regents of the University of Selling et al , 2014 , Industrial Crops and Products , 41 :113-119 . * Minnesota , Minneapolis , MN (US ) Vaughn et al , 2005 , Journal of Chemical Ecology , 31 : 167-177 . * Badani et al, 2006 , Genome, 49 : 1499-1509 . * (72 ) Inventors : Tim Ulmasov , Chesterfield , MO (US ) ; Tsogtbaatar et al , 2015 , Journal of Experimental Biology, 66 : 4267 4277. * Gary Hartnell, St. Peters, MO (US ) ; Li et al , 2015 , Journal of Agriculture and Food Chemistry , 63: 9590 John C. Sedbrook , Bloomington , IL 9600. * (US ) ; Michael David Marks, Roseville , Appelhagen et al ., “ Transparent Testal Interacts with R2R3- MYB MN (US ) ; Ratan Chopra , St. Paul, Factors and Affects Early and Late Steps of Flavonoid Biosynthesis MN (US ) ; Maliheh Esfahanian , in the Endothelium of Arabidopsis thaliana Seeds” , The Plant Bloomington , IL (US ) Journal , 2011 , pp . 406-419 , vol. 67 . Appelhagen et al. , “ Update on Transparent Testa Mutants from Arabidopsis thaliana : Characterisation of New Alleles from an ( 73 ) Assignees : COVERCRESS , INC ., St. Louis , MO Isogenic Collection ” , Planta , 2014 , pp . 955-970, vol . 240 . (US ) ; Board of Trustees of Illinois Baudry et al. , “ TT2 , TT8, and TTG1 Synergistically Specify the State University , Normal, IL (US ) ; Expression of BANYULS and Proanthocyanidin Biosynthesis in Regents of the University of Arabidopsis thaliana ” , The Plant Journal, 2004 , pp . 366-380 , vol . Minnesota , Minneapolis , MN (US ) 39 . Chen et al. , “ The Effect of Transparent Testa2 on Seed Fatty Acid Subject to any disclaimer , the term of this Biosynthesis and Tolerance to Environmental Stresses during Young ( * ) Notice : Seedling Establishment in Arabidopsis ” , Oct. 2012 , pp . 1023-1036 , patent is extended or adjusted under 35 vol. 160 . U.S.C. 154 ( b ) by 0 days . Chen et al. , “ Transparent Testa8 Inhibits Seed Fatty Acid Accumu lation by Targeting Several Seed Development Regulators in ( 21 ) Appl. No .: 16 /131,633 Arabidopsis ” , Plant Physiology , Jun . 2014 , pp . 905-916 , vol. 165 . Debeaujon et al ., “ The Transparent Testa12 Gene of Arabidopsis (22 ) Filed : Sep. 14 , 2018 Encodes a Multidrug Secondary Transporter - like Protein Required for Flavonoid Sequestration in Vacuoles of the Seed Coat Endothelium ” , The Plant Cell, Apr. 2001 , pp . 853-871 , vol . 13 . (65 ) Prior Publication Data Dehaan et al. , “ A Pipeline Strategy for Grain Crop Domestication ” , US 2019/0082718 A1 Mar. 21, 2019 Crop Science , 2016 , pp . 917-930 , vol . 56 . Dorn et al. , “ A DraftGenome of Field Pennycress ( Thlaspi arvense ) Provides Tools for the Domestication of a New Winter Biofuel Related U.S. Application Data Crop ” , DNA Research , 2015 , pp . 121-131 , vol . 22 , No. 2 . Jordan et al. , “ Sustainable Commercialization of New Crops for the (60 ) Provisional application No.62 / 559,122 , filed on Sep. Agricultural Bioeconomy” , Elementa : Science of the Anthropocene, 15 , 2017 . Jan. 8 , 2016 , Vo . 4 , No. 81 . Kantar et al. , “ Perennial Grain and Oilseed Crops ” , Plant Biology, ( 51 ) Int . Cl. 2016 , pp . 703-729, vol. 67 . A23K 10/30 ( 2016.01) Li et al ., “ A Large Insertion in BHLH Transcription Factor BrTT8 A23K 20/158 (2016.01 ) Resulting in Yellow Seed Coat in Brassica rapa ” , PLOS One, 2012 , A01H 5/10 ( 2018.01) vol. 7 , No. 9 . (52 ) U.S. CI. Lian et al ., “ Silencing of BnTTi Family Genes Affects Seed CPC Flavonoid Biosynthesis and Alters Seed Fatty Acid Composition in A23K 10/30 ( 2016.05 ) ; A23K 20/158 Brassica napus” , Plant Science , 2017 , pp . 32-47 , vol . 254 . (2016.05 ) National Institute of Food and Agriculture , “ Advancing Field Pennycress (58 ) Field of Classification Search as a New Oilseed Biodiesel Feedstock that Does Not Require New None Land Commitments Annual Report ” ,Accession No. 1004021, Retrieved See application file for complete search history. from https://portal.nifa.usda.gov/web/crisprojectpages/1004021 on Nov. 26 , 2018 , 10 pages . ( 56 ) References Cited (Continued ) U.S. PATENT DOCUMENTS Primary Examiner Jason Deveau Rosen 4,933,166 A 6/1990 Shen et al. (74 ) Attorney, Agent, or Firm Thompson Coburn LLP ; 7,960,612 B2 * 6/2011 Zhang CO7K 14/415 Charles P. Romano 800/298 2004/0045049 Al 3/2004 Zhang et al. (57 ) ABSTRACT 2006/0150283 A1 7/2006 Alexandrov et al . 2009/0138981 A1 5/2009 Repetti et al . Pennycress seed , seed lots , and seed meal having reduced 2016/0138034 Al 5/2016 Hancock et al. fiber content and improved suitability for use in producing animal feed are provided . FOREIGN PATENT DOCUMENTS EP 0312763 A1 4/1989 24 Claims, 6 Drawing Sheets WO 2006010096 A2 1/2006 Specification includes a Sequence Listing . US 10,709,151 B2 Page 2 ( 56 ) References Cited United States Department ofAgriculture , “ Advancing Field Pennycress as a New Oilseed Biodiesel Feedstock that does not Require New Land Commitments Annual Progress Report ” , Accession No. 1004021 , Date Submitted to NIFA Jan. 9 , 2018 , 7 pages . OTHER PUBLICATIONS United States Department of Agriculture , “ Advancing Field Pennycress Nesi et al. , “ The Arabidopsis TT2 Gene Encodes an R2R3 MYB as a New Oilseed Biodiesel Feedstock that does not Require New Land Commitments Annual Progress Report” , Accession No. 1004021 , Domain Protein That Acts as a Key Determinant for Proanthocyanidin Date Submitted to NIFA Nov. 30 , 2015 , 7 pages . Accumulation in Developing Seeds” , The Plant Cell, Sep. 2001, pp . Zhang et al ., “ Map - Based Cloning and Characterization of a Gene 2099-2114 , vol. 13 . Controlling Hairiness and Seed Coat Color Traits in Brassica rapa ” , Nesi et al. , “ The Transparent Testa16 Locus Encodes the Arabidopsis Plant Molecular Biology , 2009 , pp . 553-563 , vol. 69 . Bsister Mads Domain Protein and is Required for Proper Develop Alhotan , RA , “ Nutritive Value and the Maximum Inclusion Level of ment and Pigmentation of the Seed Coat" , The Plant Cell, Oct. Pennycress Meal for Broiler Chickens ” , Poultry Science, Jan. 2017 , 2002 , pp . 2463-2479 , vol . 14 . pp . 2281-2293 , vol. 96 . Nesi et al. , “ The TT8 Gene Encodes a Basic Helix -Loop -Helix Selling et al. , “ Extraction of Proteins from Pennycress Seeds and Domain Protein Required for Expression of DFR and BAN Genes Press Cake ” , Industrial Crops and Products , Apr. 2012 , pp . 113-119 , in Arabidopsis siliques” , The Plant Cell, Oct. 2000 , pp . 1863-1878 , vol. 41 . vol . 12 . Evangelista et al. , “ Extraction of Pennycress ( Thiaspi arvense L.) Pourcel et al ., “ Transparent Testa10 Encodes a Laccase - Like Enzyme Seed Oil by Full Pressing ” , Industrial Crops and Products , Dec. Involved in Oxidative Polymerization of Flavonoids in Arabidopsis 2011, pp . 76-81 , vol. 37 . Seed Coat ” , The Plant Cell, Nov. 2005 , pp . 2966-2980 , vol. 17 . International Search Report and Written Opinion for PCT /US2018 / Sagasser et al. , “ A. thaliana Transparent Testa 1 is Involved in Seed 051163 dated Jan. 4 , 2019 . Coat Development and Defines the WIP Subfamily of Plant Zinc An , et al . " Phylogeography of Thlaspi arvense (Brassicacea ) in Finger Proteins” , Genes and Development , Jan. 1 , 2002 , pp . 138 China Inferred from Chloroplast and Nuclear DNA Sequences and 149 , vol . 16 , No. 1 . Ecological Niche Modeling ” ,. Int. J. Mol . Sci . 2015 , 16 , 13339 Sedbrook et al ., “ New Approaches to Facilitate Rapid Domestica 13355. https://doi.org/10.3390/jms160613339 . tion of a Wild Plant to an Oilseed Crop : Example Pennycress “ AOAC Official Method 973.18 Fiber ( Acid Detergent) and Lignin ( Thlaspi arvense L.) ” , Plant Science , 2014 , pp . 122-132 , vol. 227 . (H2SO4 ) in Animal Feed ” , © 2000 AOAC International , down Slominski et al . , “ Nutritive Value for Broilers of Meals Derived loaded from http://www.cankaowuzhi.com/document/guowai/ from Newly Developed Varieties of Yellow - Seeded Canola ” , Ani AOAC973_18.pdf Mar. 21, 2020 . mal Feed Science and Technology, 1999 , pp . 249-262 , vol . 78 . Herbicide safener definition downloaded from the National Agri United States Department ofAgriculture , “ Advancing Field Pennycress cultural Library of the US Department of Agriculture website as a New Oilseed Biodiesel Feedstock that does not Require New https://agclass.nal.usda.gov/glossary.shtml on Mar. 25 , 2020 . Land Commitments Annual Progress Report ” , Accession No. 1004021, Date Submitted to NIFA Dec. 6 , 2016 , 9 pages . * cited by examiner U.S. Patent Jul. 14 , 2020 Sheet 1 of 6 US 10,709,151 B2 A. B. C. FIGURE 1A , B , C U.S. Patent Jul. 14 , 2020 Sheet 2 of 6 US 10,709,151 B2 A. inito GANA scaffold » 1710 17 MAS promoter AQU6-1Atvopromoter :29 promoter 7000 3,7,000 I81Kank-NO eade PARV8 ( S $ 51.7710 ) DVS1Staa 191335SPPDKwe promoter C. B. FIGURE 2A , B U.S. Patent Jul. 14 , 2020 Sheet 3 of 6 US 10,709,151 B2 14,000 PVSIoriv bom site from PBR322 Se 20001 Aørt ( 2237 ) bom Rep2 AtU6-1 RepOrigin_1 Aart ( 2269 ) LaT- DNA repeat promoter segons 12,000 OVS1Stan pea3Aterm PARV187_FnCpfi Base Vector 14,845 OS SINQuseidohuni 4000 NOSterminator RBT-ONArepeat NE 000'OTI EGFP CMVPromoter 3xFLAG 16000 Set FIGURE 3 U.S. Patent Jul. 14 , 2020 Sheet 4 of 6 US 10,709,151 B2 bom site from? POR322 mal PVS1oriv pop ? Repz 2000 12,000 Rep.Origin LBP-ONA T-repeatDNA LB AU6-1 promoter PVS1Staa PARV191.Smcsmi Base Vector 12,137 bp HucieoplasminMLS RB7-DNA repeat 14000 10,000 ONOSterminator EGFPCMV Prornoter 3xFLAG 16000 00084 PSS TODOC FIGURE 4 U.S. Patent Jul. 14 , 2020 Sheet 5 of 6 US 10,709,151 B2 A. 4.5 4. 4.4.4 ... -444 tikel 08176869.Tasarvence dna 3 . B. 772 17506 Thiesos srvente csap.S C.
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