A Checklist of Trans-Himalayan Dicot Flora of Dolpo and Its Surrounding Region in Northwest Nepal
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Sequencing and Analysis of Chrysanthemum Carinatum Schousb and Kalimeris Indica
molecules Article Sequencing and Analysis of Chrysanthemum carinatum Schousb and Kalimeris indica. The Complete Chloroplast Genomes Reveal Two Inversions and rbcL as Barcoding of the Vegetable Xia Liu * ID , Boyang Zhou, Hongyuan Yang, Yuan Li, Qian Yang, Yuzhuo Lu and Yu Gao State Key Laboratory of Food Nutrition and Safety, Key Laboratory of Food Nutrition and Safety, Ministry of Education of China, College of Food Engineering and Biotechnology, Tianjin University of Science &Technology, Tianjin 300457, China; [email protected] (B.Z.); [email protected] (H.Y.); [email protected] (Y.L.); [email protected] (Q.Y.); [email protected] (Y.L.); [email protected] (Y.G.) * Correspondence: [email protected]; Tel.: +86-022-6091-2406 Received: 20 April 2018; Accepted: 31 May 2018; Published: 5 June 2018 Abstract: Chrysanthemum carinatum Schousb and Kalimeris indica are widely distributed edible vegetables and the sources of the Chinese medicine Asteraceae. The complete chloroplast (cp) genome of Asteraceae usually occurs in the inversions of two regions. Hence, the cp genome sequences and structures of Asteraceae species are crucial for the cp genome genetic diversity and evolutionary studies. Hence, in this paper, we have sequenced and analyzed for the first time the cp genome size of C. carinatum Schousb and K. indica, which are 149,752 bp and 152,885 bp, with a pair of inverted repeats (IRs) (24,523 bp and 25,003) separated by a large single copy (LSC) region (82,290 bp and 84,610) and a small single copy (SSC) region (18,416 bp and 18,269), respectively. In total, 79 protein-coding genes, 30 distinct transfer RNA (tRNA) genes, four distinct rRNA genes and two pseudogenes were found not only in C. -
T.C. Balikesir Üniversitesi Fen Bilimleri Enstitüsü Biyoloji Anabilim Dali
T.C. BALIKESİR ÜNİVERSİTESİ FEN BİLİMLERİ ENSTİTÜSÜ BİYOLOJİ ANABİLİM DALI TÜRKİYE’DE YETİŞEN SILENE L. CİNSİNİN AURICULATAE VE BRACHYPODEAE SEKSIYONLARINA AİT TÜRLERİN ITS nrDNA DİZİLERİNE DAYALI FİLOGENETİK İLİŞKİLERİ YÜKSEK LİSANS TEZİ EMRE SEVİNDİK Balıkesir, Temmuz–2011 T.C. BALIKESİR ÜNİVERSİTESİ FEN BİLİMLERİ ENSTİTÜSÜ BİYOLOJİ ANABİLİM DALI TÜRKİYE’DE YETİŞEN SILENE L. CİNSİNİN AURICULATAE VE BRACHYPODEAE SEKSIYONLARINA AİT TÜRLERİN ITS nrDNA DİZİLERİNE DAYALI FİLOGENETİK İLİŞKİLERİ YÜKSEK LİSANS TEZİ EMRE SEVİNDİK Balıkesir, Temmuz–2011 ÖZET TÜRKİYE’DE YETİŞEN SILENE L. CİNSİNİN AURICULATAE VE BRACHYPODEAE SEKSIYONLARINA AİT TÜRLERİN ITS nrDNA DİZİLERİNE DAYALI FİLOGENETİK İLİŞKİLERİ Emre SEVİNDİK Balıkesir Üniversitesi, Fen Bilimleri Enstitüsü, Biyoloji Anabilim Dalı Yüksek Lisans Tezi/ Tez Danışmanı: Yrd. Doç. Dr. Fatih COŞKUN Balıkesir,2011 Bu çalışmada Türkiye’nin farklı illerinden toplanan Silene L. (Caryophyllaceae) cinsine ait 17 türün nrDNA ITS bölgelerinin moleküler sistematik analizi yapılmıştır. Arazi çalışmasında toplanan örneklerin önce tanımı yapılıp daha sonra her örnek herbaryum haline dönüştürülmüştür. Daha sonra örneklerin ITS profillerinin belirlenmesi için her türün yaprak örneklerinden DNA izolasyonu yapılmıştır. Örneklerin daha sonra ITS bölgeleri uygun ITS4 ve ITS5A primerleri kullanılarak polimeraz zincir reaksiyonu (PCR) ile çoğaltımıştır. Çoğalan DNA bölgelerinin baz diziler elde edilip işlenerek PAUP programı ile filogenetik analiz yapılmıştır. Değerlendirme sonucu çalışılan türler arası akrabalık ilişkilerini -
Floristic Composition and Ecological Characteristics of Plants of Chail Valley, District Swat, Pakistan
Pak. J. Bot., 48(3): 1013-1026, 2016. FLORISTIC COMPOSITION AND ECOLOGICAL CHARACTERISTICS OF PLANTS OF CHAIL VALLEY, DISTRICT SWAT, PAKISTAN ASGHAR ALI1*, LAL BADSHAH2 , FARRUKH HUSSAIN3 AND ZABTA KHAN SHINWARI4 1Dr Khan Shaheed Govt. Degree College Kabal Swat, Pakistan 2Department of Botany, University of Peshawar, Pakistan 3Department of Microbiology, Sarhad University of Science and Information Technology, Peshawar, Pakistan 4Department of Biotechnology, Quaid e Azam University, Islamabad, Pakistan *Correspondingauthore-mail: [email protected] Abstract The present study was carried out during 2012-2014 to enumerate the floristic and ecological characteristics of plants of Chail Valley, District Swat. A total of 463 species belonging to 104 families were recorded. Leading families were Asteraceae (42 Spp), Poaceae (35 Spp), Rosaceae and Lamiaceae (each with 26 Spp), Papilionaceae (25 Spp), Brassicaceae and Boraginaceae (each with 16 Spp), Apiaceae (14 Spp), Solanaceae (13 Species) and Ranunculaceae (12 Spp). Each of the remaining families had less than 12 species. Therophytes with 188 species, 40.60% were dominant. They were followed by hemicryptophytes (77 species, 16.63%). Cuscuta europaea L., C. reflexa Roxb. and Viscum album L. were the three shoot parasites. The leaf spectra was dominated by mesophylls (147 Spp; 31.75%), microphylls (140 Spp.; 30.24%) and nanophylls (136 Spp.; 29.37%). Two species were aphyllous. Majority of the species (305 Spp., 65.87%) had simple lamina. Eight species (1.73%) had spiny leaves. Key words: Floristic diversity, Ecological characteristics, Chail valley, District Swat, Pakistan. Introduction and plant families were arranged in alphabetical order. Plant species were classified into leaf size classes and life Chail Valley is located between 72o 32' 1" to 72o43' 3" form according to Raunkiaer (1934) and Hussain (1989). -
Biodiversity in Karnali Province: Current Status and Conservation
Biodiversity in Karnali Province: Current Status and Conservation Karnali Province Government Ministry of Industry, Tourism, Forest and Environment Surkhet, Nepal Biodiversity in Karnali Province: Current Status and Conservation Karnali Province Government Ministry of Industry, Tourism, Forest and Environment Surkhet, Nepal Copyright: © 2020 Ministry of Industry, Tourism, Forest and Environment, Karnali Province Government, Surkhet, Nepal The views expressed in this publication do not necessarily reflect those of Ministry of Tourism, Forest and Environment, Karnali Province Government, Surkhet, Nepal Editors: Krishna Prasad Acharya, PhD and Prakash K. Paudel, PhD Technical Team: Achyut Tiwari, PhD, Jiban Poudel, PhD, Kiran Thapa Magar, Yogendra Poudel, Sher Bahadur Shrestha, Rajendra Basukala, Sher Bahadur Rokaya, Himalaya Saud, Niraj Shrestha, Tejendra Rawal Production Editors: Prakash Basnet and Anju Chaudhary Reproduction of this publication for educational or other non-commercial purposes is authorized without prior written permission from the copyright holder provided the source is fully acknowledged. Reproduction of this publication for resale or other commercial purposes is prohibited without prior written permission of the copyright holder. Citation: Acharya, K. P., Paudel, P. K. (2020). Biodiversity in Karnali Province: Current Status and Conservation. Ministry of Industry, Tourism, Forest and Environment, Karnali Province Government, Surkhet, Nepal Cover photograph: Tibetan wild ass in Limi valley © Tashi R. Ghale Keywords: biodiversity, conservation, Karnali province, people-wildlife nexus, biodiversity profile Editors’ Note Gyau Khola Valley, Upper Humla © Geraldine Werhahn This book “Biodiversity in Karnali Province: Current Status and Conservation”, is prepared to consolidate existing knowledge about the state of biodiversity in Karnali province. The book presents interrelated dynamics of society, physical environment, flora and fauna that have implications for biodiversity conservation. -
Phylogeny of Hinterhubera, Novenia and Related
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 2006 Phylogeny of Hinterhubera, Novenia and related genera based on the nuclear ribosomal (nr) DNA sequence data (Asteraceae: Astereae) Vesna Karaman Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Recommended Citation Karaman, Vesna, "Phylogeny of Hinterhubera, Novenia and related genera based on the nuclear ribosomal (nr) DNA sequence data (Asteraceae: Astereae)" (2006). LSU Doctoral Dissertations. 2200. https://digitalcommons.lsu.edu/gradschool_dissertations/2200 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. PHYLOGENY OF HINTERHUBERA, NOVENIA AND RELATED GENERA BASED ON THE NUCLEAR RIBOSOMAL (nr) DNA SEQUENCE DATA (ASTERACEAE: ASTEREAE) A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Biological Sciences by Vesna Karaman B.S., University of Kiril and Metodij, 1992 M.S., University of Belgrade, 1997 May 2006 "Treat the earth well: it was not given to you by your parents, it was loaned to you by your children. We do not inherit the Earth from our Ancestors, we borrow it from our Children." Ancient Indian Proverb ii ACKNOWLEDGMENTS I am indebted to many people who have contributed to the work of this dissertation. -
Department of Botany Hazara University Mansehra 2015
DISTRIBUTION PATTERN AND CONSERVATION STATUS OF PLANTS ENDEMIC TO PAKISTAN IN HAZARA REGION ABDUL MAJID DEPARTMENT OF BOTANY HAZARA UNIVERSITY MANSEHRA 2015 i HAZARA UNIVERSITY MANSEHRA Department of Botany DISTRIBUTION PATTERN AND CONSERVATION STATUS OF PLANTS ENDEMIC TO PAKISTAN IN HAZARA REGION By Abdul Majid This research study has been conducted and reported as partial fulfilment of the requirements of Ph.D degree in Botany awarded by Hazara University Mansehra, Pakistan Mansehra Monday, April 12, 2015 ii DISTRIBUTION PATTERN AND CONSERVATION STATUS OF PLANTS ENDEMIC TO PAKISTAN IN HAZARA REGION SUBMITTED BY ABDUL MAJID PhD Scholar RESEARCH SUPERVISOR PROF. DR. HABIB AHMAD (Tamgha-e-Imtiaz) Dean Faculty of Science Hazara University, Mansehra CO-SUPERVISOR DR. HAIDER ALI Assistant Professor Centre for Plant Sciences & Biodiversity University of Swat, Swat DEPARTMENT OF BOTANY HAZARA UNIVERSITY, MANSEHRA 2015 iii iv CONTENTS Acknowledgements.................................................................................................................... Abstract........................................................................................................................................ vi Chapter 1 ....................................................................................................................................... 1 1 INTRODUCTION............................................................................................................... 1 1.1 Endemism .................................................................................................................... -
Phylogeny and Biogeography of Primula Sect. Armerina: Implications
Ren et al. BMC Evolutionary Biology (2015) 15:161 DOI 10.1186/s12862-015-0445-7 RESEARCH ARTICLE Open Access Phylogeny and biogeography of Primula sect. Armerina: implications for plant evolution under climate change and the uplift of the Qinghai-Tibet Plateau Guangpeng Ren1,2,3, Elena Conti4 and Nicolas Salamin1,2* Abstract Background: The historical orogenesis and associated climatic changes of mountain areas have been suggested to partly account for the occurrence of high levels of biodiversity and endemism. However, their effects on dispersal, differentiation and evolution of many groups of plants are still unknown. In this study, we examined the detailed diversification history of Primula sect. Armerina, and used biogeographic analysis and macro-evolutionary modeling to investigate a series of different questions concerning the evolution of the geographical and ecological distribution of the species in this section. Results: We sequenced five chloroplast and one nuclear genes for species of Primula sect. Armerina. Neither chloroplast nor nuclear trees support the monophyly of the section. The major incongruences between the two trees occur among closely related species and may be explained by hybridization. Our dating analyses based on the chloroplast dataset suggest that this section began to diverge from its relatives around 3.55 million years ago, largely coinciding with the last major uplift of the Qinghai-Tibet Plateau (QTP). Biogeographic analysis supports the origin of the section in the Himalayan Mountains and dispersal from the Himalayas to Northeastern QTP, Western QTP and Hengduan Mountains. Furthermore, evolutionary models of ecological niches show that the two P. fasciculata clades have significantly different climatic niche optima and rates of niche evolution, indicating niche evolution under climatic changes and further providing evidence for explaining their biogeographic patterns. -
Strong Incongruence Between the ITS Phylogeny and Generic Delimitation in the Nemosenecio-Sinosenecio- Tephroseris Assemblage (Asteraceae: Senecioneae)
Botanical Studies (2009) 50: 435-442. PHYLOGENETICS Strong incongruence between the ITS phylogeny and generic delimitation in the Nemosenecio-Sinosenecio- Tephroseris assemblage (Asteraceae: Senecioneae) Liu-YangWANG1,2,5,PieterB.PELSER3,BertilNORDENSTAM4, and Jian-Quan LIU2,* 1Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Plateau Institute of Biology, Chinese Academy of Sciences, Xining 810001, P.R. China 2Key Laboratory of Arid and Grassland Ecology, School of Life Science, Lanzhou University, Lanzhou 730000, P.R. China 3Oklahoma State University, Botany Department, 104 Life Sciences East Stillwater, Oklahoma 74078-3013, USA 4Swedish Museum of Natural History, P. O. Box 50007, SE-104 05 Stockholm, Sweden 5Graduate University of Chinese Academy of Sciences, Beijing 100049, P.R. China (Received January 9, 2009; Accepted March 9, 2009) ABSTRACT. ThethreegeneraSinosenecio,NemosenecioandTephroserisformacloselyknitgroupnested inthesubtribeTussilagininaeofthetribeSenecioneae(Asteraceae).Thegenericlimitsinthisassemblage remain unclear and need revision. In this study, we analysed sequences of the internal transcribed spacer (ITS) region of nuclear ribosomal DNA available from GenBank and sequenced 19 accessions of an additional 13 species encompassing all three genera. Phylogenetic analyses based on the ITS variation of 27 species in this assemblage and seven species from related genera of the Tussilagininae suggested that neither Sinosenecio norTephroserisismonophyletic.ThesampledspeciesofSinoseneciowerescatteredindifferentcladesor -
Complete List of Literature Cited* Compiled by Franz Stadler
AppendixE Complete list of literature cited* Compiled by Franz Stadler Aa, A.J. van der 1859. Francq Van Berkhey (Johanes Le). Pp. Proceedings of the National Academy of Sciences of the United States 194–201 in: Biographisch Woordenboek der Nederlanden, vol. 6. of America 100: 4649–4654. Van Brederode, Haarlem. Adams, K.L. & Wendel, J.F. 2005. Polyploidy and genome Abdel Aal, M., Bohlmann, F., Sarg, T., El-Domiaty, M. & evolution in plants. Current Opinion in Plant Biology 8: 135– Nordenstam, B. 1988. Oplopane derivatives from Acrisione 141. denticulata. Phytochemistry 27: 2599–2602. Adanson, M. 1757. Histoire naturelle du Sénégal. Bauche, Paris. Abegaz, B.M., Keige, A.W., Diaz, J.D. & Herz, W. 1994. Adanson, M. 1763. Familles des Plantes. Vincent, Paris. Sesquiterpene lactones and other constituents of Vernonia spe- Adeboye, O.D., Ajayi, S.A., Baidu-Forson, J.J. & Opabode, cies from Ethiopia. Phytochemistry 37: 191–196. J.T. 2005. Seed constraint to cultivation and productivity of Abosi, A.O. & Raseroka, B.H. 2003. In vivo antimalarial ac- African indigenous leaf vegetables. African Journal of Bio tech- tivity of Vernonia amygdalina. British Journal of Biomedical Science nology 4: 1480–1484. 60: 89–91. Adylov, T.A. & Zuckerwanik, T.I. (eds.). 1993. Opredelitel Abrahamson, W.G., Blair, C.P., Eubanks, M.D. & More- rasteniy Srednei Azii, vol. 10. Conspectus fl orae Asiae Mediae, vol. head, S.A. 2003. Sequential radiation of unrelated organ- 10. Isdatelstvo Fan Respubliki Uzbekistan, Tashkent. isms: the gall fl y Eurosta solidaginis and the tumbling fl ower Afolayan, A.J. 2003. Extracts from the shoots of Arctotis arcto- beetle Mordellistena convicta. -
Both Species Recolonization and Habitat Filtering Drive the Current
Both species recolonization and habitat filtering drive the current plant community in temperate region mountains Weibo Du1, Peng Jia1, and Guozhen Du1 1Affiliation not available April 28, 2020 Abstract Biodiversity and community assembly are central topics in ecological studies, and mountains present natural laboratories for studying these issues. Most previous studies have focused on biodiversity hotspots and tropical regions, and relevant research in the middle and high latitudes is relatively limited. We hypothesized that species dispersion and habitat filtering simultaneously might drive the assembly of the current plant community in temperate region mountains. We studied the plant community of the Kunlun Mountains, an independent physical geographic unit located in northwest China on the northern edge of the Qinghai- Tibetan Plateau. We integrated measures of species distribution, geological history, and phylogeography, and analyzed the taxonomic richness, phylogenetic diversity, and phylogenetic community structure of the current plant community in the area. The distribution patterns of 1,911 seed plants showed that species were distributed mainly in the eastern and the southeastern parts of the Kunlun Mountains, which were considered as conservation targets for biodiversity. Similarities of genera and species strongly indicated that mass species migrations exist among the Kunlun Mountains and adjacent biodiversity hotspots. This indicated that the current patterns of species diversity were from species recolonization, and the plant species of the Kunlun Mountains originated primarily from the Hengduan Mountains which are a biodiversity hotspot. The net relatedness index (NRI) indicated that 17 of the 28 communities were phylogenetic clustering, and the others were phylogenetic dispersion. The nearest taxon index (NTI) indicated that 27 of the 28 communities were phylogenetic clustering, and the phylogenetic community structure of Banma County was the only example of overdispersion. -
Flowering Plants. Eudicots
Edited by K. Kubitzki Volume XIV Flowering Plants. Eudicots Aquifoliales, Boraginales, Bruniales, Dipsacales, Escalloniales, Garryales, Paracryphiales, Solanales (except Convolvulaceae), Icacinaceae, Metteniusaceae, Vahliaceae Joachim W. Kadereit · Volker Bittrich (Eds.) THE FAMILIES AND GENERA OF VASCULAR PLANTS Edited by K. Kubitzki For further volumes see list at the end of the book and: http://www.springer.com/series/1306 . The Families and Genera of Vascular Plants Edited by K. Kubitzki Flowering Plants Eudicots Aquifoliales, Boraginales, Bruniales, XIV Dipsacales, Escalloniales, Garryales, Paracryphiales, Solanales (except Convolvulaceae), Icacinaceae, Metteniusaceae, Vahliaceae Volume Editors: Joachim W. Kadereit Volker Bittrich With 76 Figures Editors Joachim W. Kadereit Volker Bittrich Johannes Gutenberg Campinas Universit€at Mainz Brazil Mainz Germany Series Editor Prof. Dr. Klaus Kubitzki Universit€at Hamburg Biozentrum Klein-Flottbek und Botanischer Garten 22609 Hamburg Germany ISBN 978-3-319-28532-0 ISBN 978-3-319-28534-4 (eBook) DOI 10.1007/978-3-319-28534-4 Library of Congress Control Number: 2016937409 # Springer International Publishing Switzerland 2016 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. Exempted from this legal reservation are brief excerpts in connection with reviews or scholarly analysis or material supplied specifically for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. -
Flowering Plants of Sikkim- an Analysis
FLOWERING PLANTS OF SIKKIM- AN ANALYSIS Paramjit Singh and M. Sanjappa ABSTRACT ikkim is one of the biodiversity rich states of our country. The present paper analyses the flowering plant diversity of the state with some indicative figures of dominant genera like Bulbophyllum, Calanthe, Coelogyne, SCymbidium, Dendrobium, Gentiana, Juncus, Pedicularis, Primula, Rhododendron and Swertia recorded from the region. Nearly 165 species have been named after the state, as they were first collected from the state or plants were known to occur in Sikkim. Some of the representative endemic species of the state have also been listed. One hundred ninety seven families, 1371 genera have been appended with indicative number of species of each genus known to occur in Sikkim. In all more than 4450 species of flowering plants recorded so far. KEYWORDS: Diversity, Dominant genera, Endemics, Families, Flowering Plants, Sikkim Waldheimia glabra in Lhonak, North Sikkim 65 Middle storey of Rhododendron in Conifer forests INTRODUCTION ikkim, the second smallest state of India having an area of around 7096 sq. km is known as the paradise of naturalists. It is a thumb shaped hilly region with Nepal in the west, Bhutan in the east and Tibet in the north and Snorth-east. In the south it is bordered by Darjeeling district of West Bengal. The mountain chains which run southward from the main Himalayan ranges form the natural border of Sikkim; the Chola Range dividing it from Tibet in the north east and Bhutan in the south-east; the Singalila range likewise separating it from Nepal in the west. Mountain passes along these ranges over the years have sustained a two way traffic of traders, pilgrims, and adventurers from Tibet and Central Asia.