SupplTable2.xls

Unit name Gene name Forward sequence Reverse sequence AKAP13_0 AKAP13 CAGTGATGTGTCTCTCTCC GTTCTCTCTGGTCTGACTC APAF1_0 APAF1 GGACCCTCAAGAGGATATG GAAAGTACTGTACCCTGGTG ARID4B_0 ARID4B GAGGAGTACTGTAGATCAGC TGGCATCAGTGAGATCCAG ASC_0 ASC CTTCTACCTGGAGACCTAC GTAGGACTGGGACTCCCTTA AXIN1_0 AXIN1 GAGGCTACTCAGAGAGTGTT CAGAAGTAGTACGCCACAAC AXL_0 AXL CCCCTGAGAACATTAGTGCT AGAGCCAAGATGAGGACACA AXUD1_0 AXUD1 GTCCGGCACCACCATGACT GATGTGAAGCTACAGCCAG BAX_0 BAX GAGCAGATCATGAAGACAGG GTCCCAAAGTAGGAGAGGA BCL2L11_0 BCL2L11 TACCTCCCTACAGACAGAG CCTCCTTGCATAGTAAGCGT BCL2L12_0 BCL2L12 TCCTAGCTGCCTTCCTTAG GTATGGCTTCCTTCTCTGTC BCL2L1_0 BCL2L1 ATGGCAGCAGTAAAGCAAGCG TCATTTCCGACTGAAGAGTGA BCLAF1_0 BCLAF1 GTACCCTGAGGAAGCATAC AGTACCACGACCTCTTCCT BIRC5_0 BIRC5 CCACCGCATCTCTACATTCA CTGGTGCCACTTTCAAGACA BNIP1_0 BNIP1 CCGGATCTGTAACCAAGAG CTTAAGAGATCTCCTCCCTG BNIP1_1 BNIP1 CAACTCTCCAACTACACCTG CTCTCAGTGATGGTACTGG BRAF_0 BRAF GAGAGGTCTAATCCCAGAGT CACGTTAGTTAGTGAGCCAG BRCA1_0 BRCA1 CTAACAGCTACCCTTCCATC ACCACATCTCCTCTGACTTC BRCA1_1 BRCA1 GTCTCAGTGTCCAACTCTCT GTCACTCTGAGAGGATAGC C11orf17_0 C11orf17 CTCTAGAAGTGCTGGAGAG GACCATTCCCTATGTCCAAG C11orf17_1 C11orf17 GTTATCACAGAGGCGAGTC CAACTGCTACCACATGAGTC CARD10_0 CARD10 GAGTTCTACTACCCCGAAC CTCAGAGACAAGGTCCACAT CARD10_1 CARD10 GTGGACCTTGTCTCTGAGC GTACAGGTCACAGTCCTTC CASP10_0 CASP10 AGACTCGCTTCCCAAAACTG ATCTGCTTCGATGGATACGG CASP1_0 CASP1 AGGTCCTGAAGGAGAAGAG CCTCCACATCACAGGAACA CASP4_0 CASP4 GGGTCATGGCAGACTCTAT CTATAGTCCAGACCCTCAAG CASP6_0 CASP6 ATGAGCTCGGCCTCGGGG GGCTGCATCCACCTCAGTTA CASP7_0 CASP7 GACCGAGTGCCTACATATC GCTCCTCCACGAGTAATAG CASP8_0 CASP8 CACTAGAAAGGAGGAGATGG GATGATCAGACAGTATCCCC CASP9_0 CASP9 TCCTGCTTAGAGGACACAG GGACACAAAGATGTCACTGG CTNNAL1_0 CTNNAL1 GCTGAAGAACTGGAACTCAG GTTACTGTCTGGAGCTGGT DATF1_0 DATF1 GAGAGAGTAAGTTGGAGGG CCTTCTTCACTGTGGTCTC DIABLO_0 DIABLO CTCTGAAGAGTTGGCTGTC CTGACGGAGCTCTTCTATC DLEC1_0 DLEC1 ACTCCTCCTACTCTGTGGAT GCTCTGTAGGTACACATGG DLEC1_1 DLEC1 CATGTGTACCTACAGAGCAG GTCAATAGTGTAGGAGGTGG DLEC1_2 DLEC1 CTACAGAGATCCCACACTAC GACTCGTACAGCTCACTACT EMS1_0 EMS1 GATGTGAGTGAGAAGGAGC GGTACTGTCTTCTGGTAGG EWSR1_0 EWSR1 CAGCAGAGTAGCTATGGTC AAGCCTCCTCTATCTCCTC EWSR1_1 EWSR1 GTGGCTTCAATAAGCCTGGT CTCTTCTTCCTCCCATCTGT FAF1_0 FAF1 GTGGTACTTGAAGACACCTG GGTGGAGGTAGATAGCAAG FASTK_0 FASTK CTGCTCTCTGCTCAGACCT GGACCAACTTCTGTACCAC FASTK_1 FASTK AGACCGACTGAGGGAGCGAC CAGGACCAACTTCTGTACC FGFR1OP_0 FGFR1OP GAAGCAGAAGGTACTGTGG ACTGAGCTGGGATACAGTC FYN_0 FYN CAACTGGAGAGACAGGTTAC CTCAGACACCACTGCATAG H63_0 H63 CAACTGGACAACCTCTCTC GCAGGATCCATTTGAAGCTC IL2RA_0 IL2RA CTGTACAGGAAACTCTAGCC TATGGACGTCTCCATGGTTG MAGI-3_0 MAGI-3 ATAGAGGACCCTCAGTATGG GGATAGTCACTAGTTCAGGC MALT1_0 MALT1 CTCTTAAGGTACTGGAGCCT GTCCAGCTGTCTCAGTAAG MAPK3_0 MAPK3 CTACTTCCTCTACCAGATCC TAGTACTGCTCCAGGTAGG MAPK8IP2_0 MAPK8IP2 CTCAGACCACTGTGAGAAG CTTGGAGAAAGTGAGGTCAG MAPT_0 MAPT ATGTGACAGCACCCTTAGTG GCTTTTACTGACCATGCGAG MAPT_1 MAPT CTCGCATGGTCAGTAAAAGC GTGCTTCAGGTTCTCAGTG MAPT_2 MAPT CTACACCATGCACCAAGAC ACACTTGGAGGTCACCTTG MCL1_0 MCL1 GACTCAACCTCTACTGTGG CTTCTAGGTCCTCTACATGG MDM2_0 MDM2 GTGCCAAGCTTCTCTGTGA GGTTGTCTACATACTGGGC MDM2_1 MDM2 GTACCTACTGATGGTGCTG CTCAACACATGACTCTCTGG MERTK_0 MERTK GGAGTCAGTGAGGAACTAC CTTCTTAGAGAGGCCGAAG MERTK_1 MERTK CTCGGATCTCTGTTCAAGTC GTAGTTCCTCACTGACTCC MERTK_2 MERTK CAGACCGAGTCTACACAAG CTAGCTGCAGCCTCAATAC MGC16824_0 MGC16824 CTCAGACCAGAAAGTGAAGG GTACAAGGGGAGGTAAGATG MRPS11_0 MRPS11 ATGCAGGCTGTGAGAAACG ACTAGCAGAGACTACCTGG NALP1_0 NALP1 GATTCTCTTCTCCGTCCTC GTCAACTACCTCAGTAGCC NALP1_1 NALP1 GGCTACTGAGGTAGTTGAC GGAGGGATCAGAGTAGTTG NOVA1_0 NOVA1 GTACTACTGAGCGAGTGTG GCTTGACTGAGACCTAAACC NRG2_0 NRG2 CGTCTGCTACTACATCGAG GAGTCAGAAGTCAGGCTCT NRG2_1 NRG2 AGATCCTGTGCACTGACTG CATTGCGAACTGCTGACAC OVCA2_0 OVCA2 AGGGCGCCAGATCAGACTT GGTCCAAGAACTTGAGGTAG PCBP4_0 PCBP4 CTGTCTTCCATGCAGTCTC AACAGTACCTAGGGAGAGG PDCD10_0 PDCD10 CTGGTTCCTCTTGGGTCCTT GGCTCTGGTCGTTCAATCAT PRKWNK2_0 PRKWNK2 CTCTACCGTGTACTCAGACT GCTGGAGAGAAATACTGAGG PRKWNK2_1 PRKWNK2 ACTTCCTCTAAGCTCCCTG CTCCTGGTAGAGCAGAGTC PRODH_0 PRODH GAAACTTCTAGGACAGAGGC GAGGTAGCACTGGTATGTG PRODH_1 PRODH GGAAACTTCTAGGACAGAGG CTACCAAGTGCTTGGACAGC PRSS25_0 PRSS25 GGTCTATATCGAGATCCTGG CTCAGGGGTCACATATAAGG PSEN1_0 PSEN1 CACAGAAGATACCGAGACTG CTAGATGACTGTCCCTCTG PTK2B_0 PTK2B ACCTAAGTACAGACCCCCT GTACACCAGGTCATCAGTC RBBP4_0 RBBP4 GCTCCCATTGGCTGATGTT GTCACCCAAAATGGAGATGG RELA_0 RELA AGAGGAGCACAGATACCAC GGATGACGTAAAGGGATAGG RTN4_0 RTN4 AGAAGAGGAGGAGGAAGAG AGCTGATGGTCACAGAGAG SDBCAG84_0 SDBCAG84 CTGCAGTATTACCTCACCAC GTCTGGTCACAGAGAACTG SDCCAG8_0 SDCCAG8 GTGCCTGAGACTAACAGAAC ATCGTCTCATGTACTCTCCC SEMA6A_0 SEMA6A GAGCAAGCAGCTCTCTGTAT GATCACAGACGCAGTAGAC SIVA_0 SIVA CTACTCGCAGGAGGTCTTC GTGCACAGCACTTTCTCGTA SPP1_0 SPP1 GAAGCAGAATCTCCTAGCC GTGAGACTCATCAGACTGG TIA1_0 TIA1 CAGAGATGTGACAGAAGCTC CAGTTGCTTGGACTAGACTG TIAF1_0 TIAF1 GAGGATGAGATGGAGAGTG GTCGCTGTCACTCAGATAAC TNFRSF10B_0 TNFRSF10B CAGGACTATAGCACTCACTG CTCCTCCTCTGAGACCTTT TNFRSF18_0 TNFRSF18 AGTGTATCGACTGTGCCTC TCACACCCACAGGTCTCCC TNFRSF6_0 TNFRSF6 GAGACTCAGAACTTGGAAGG GAAGAAGACAAAGCCACCC TNFRSF6_1 TNFRSF6 AGAAGGGAAGGAGTACACAG GTTCTGCTGTGTCTTGGAC TNFSF13_0 TNFSF13 CAGTGCTCACCCAAAAACAG GGAATAGAGTCTCCTGCCT TRAF2_0 TRAF2 GTCTGTCCCAGTGATGGAT GTACCTGCTGGTGTAGAAG TRAF3_0 TRAF3 GTGGAGGACAAGTACAAGTG GCTTGGCTGTCTATCACTC TRAF4_0 TRAF4 GCCACTACGTCATCTACAG CAGAGAACTCTCATCCAGG ZNF443_0 ZNF443 GACTCAGTGGTCTTTGAGG GTTTCTCTCCAGTGTGAGTC ZNF443_1 ZNF443 CATCAGGAACCTGGACTGTA GGCAAGGCTTTAGAACACTG

Supplementary Table 2. List of primers used to amplify by RT-PCR the 96 alternative splicing events in apoptotic genes.