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ID 2 | Issue No: 4.1 | Issue Date: 29.10.14 | Page: 1 of 24 © Crown Copyright 2014 Identification of Corynebacterium Species
UK Standards for Microbiology Investigations Identification of Corynebacterium species Issued by the Standards Unit, Microbiology Services, PHE Bacteriology – Identification | ID 2 | Issue no: 4.1 | Issue date: 29.10.14 | Page: 1 of 24 © Crown copyright 2014 Identification of Corynebacterium species Acknowledgments UK Standards for Microbiology Investigations (SMIs) are developed under the auspices of Public Health England (PHE) working in partnership with the National Health Service (NHS), Public Health Wales and with the professional organisations whose logos are displayed below and listed on the website https://www.gov.uk/uk- standards-for-microbiology-investigations-smi-quality-and-consistency-in-clinical- laboratories. SMIs are developed, reviewed and revised by various working groups which are overseen by a steering committee (see https://www.gov.uk/government/groups/standards-for-microbiology-investigations- steering-committee). The contributions of many individuals in clinical, specialist and reference laboratories who have provided information and comments during the development of this document are acknowledged. We are grateful to the Medical Editors for editing the medical content. For further information please contact us at: Standards Unit Microbiology Services Public Health England 61 Colindale Avenue London NW9 5EQ E-mail: [email protected] Website: https://www.gov.uk/uk-standards-for-microbiology-investigations-smi-quality- and-consistency-in-clinical-laboratories UK Standards for Microbiology Investigations are produced in association with: Logos correct at time of publishing. Bacteriology – Identification | ID 2 | Issue no: 4.1 | Issue date: 29.10.14 | Page: 2 of 24 UK Standards for Microbiology Investigations | Issued by the Standards Unit, Public Health England Identification of Corynebacterium species Contents ACKNOWLEDGMENTS ......................................................................................................... -
A Case of Mycobacterium Avium-Intracellulare Pulmonary Disease and Crohn’S Disease
Grand Rounds Vol 2 pages 24–28 Speciality: Respiratory Medicine/Gastroenterology/Infection Article Type: Case Report DOI: 10.1102/1470-5206.2002.0004 c 2002 e-MED Ltd GR A case of Mycobacterium avium-intracellulare pulmonary disease and Crohn’s disease J. Pickles, R. M. Feakins, J. Hansen, M. Sheaff and N. Barnes The London Chest Hospital, London, The Royal Hospital of St Bartholomew Hospital, Bart’s and The London NHS Trust Corresponding address: Dr N. Barnes, Consultant Respiratory Physician, The London Chest Hospital, Bonner Road, London E2 9JX, UK. Date accepted for publication December 2001 Abstract We report a case of pulmonary Mycobacterium avium-intracellulare (MAI) in a previously fit 48-year-old man who subsequently developed Crohn’s disease. We discuss the potential predisposing factors for pulmonary MAI; the diagnostic uncertainties in this particular case; the relationship between pulmonary MAI and Crohn’s disease; and the difficulties in management that are highlighted by this case. Keywords Mycobacterium avium-intracellulare, Mycobacterium paratuberculosis = Mycobacterium avium subspecies; anti-tuberculous therapy; Crohn’s disease. Case report A 48-year-old man presented with a two-month history of general malaise, a cough productive of mucopurulent sputum, weight loss of 1 stone (6.3 kg) and non-specific generalised aches. Two years previously he had undergone a left thoracotomy and pleurectomy for a recurrent left-sided pneumothorax. He had never smoked and his work involved extensive travel. On examination he was tall and of slender build. Respiratory examination was unremarkable. He had normal spirometry and CXR showed consolidation at the right apex with possible cavitation. -
Kansas Journal of Medicine, Volume 11 Issue 1
VOLUME 11 • ISSUE 1 • Feb. 2018 WHAT’S INSIDE: ORIGINAL RESEARCH • CASE STUDIES • REVIEW TABLE OF CONTENTS ORIGINAL RESEARCH 1 Safe Sleep Practices of Kansas Birthing Hospitals Carolyn R. Ahlers-Schmidt, Ph.D., Christy Schunn, LSCSW, Cherie Sage, M.S., Matthew Engel, MPH, Mary Benton, Ph.D. CASE STUDIES 5 Neck Trauma and Extra-tracheal Intubation Vinh K. Pham, M.D., Justin C. Sandall, D.O. 8 Strongyloides Duodenitis in an Immunosuppressed Patient with Lupus Nephritis Ramprasad Jegadeesan, M.D., Tharani Sundararajan, MBBS, Roshni Jain, MS-3, Tejashree Karnik, M.D., Zalina Ardasenov, M.D., Elena Sidorenko, M.D. 11 Arcanobacterium Brain Abscesses, Subdural Empyema, and Bacteremia Complicating Epstein-Barr Virus Mononucleosis Victoria Poplin, M.D., David S. McKinsey, M.D. REVIEW 15 Transgender Competent Provider: Identifying Transgender Health Needs, Health Disparities, and Health Coverage Sarah Houssayni, M.D., Kari Nilsen, Ph.D. 20 The Increased Vulnerability of Refugee Population to Mental Health Disorders Sameena Hameed, Asad Sadiq, MBChB, MRCPsych, Amad U. Din, M.D., MPH KANSAS JOURNAL of MEDICINE deaths attributed to SIDS had one or more factors contributing to an unsafe sleep environment.3 The American Academy of Pediatrics (AAP) recommendations for a safe infant sleeping environment delineate a number of modifi- able factors to reduce the risk of sleep-related infant deaths.4 Factors Safe Sleep Practices of Kansas Birthing include back sleep only, room-sharing without bed-sharing, use of a Hospitals firm sleep surface, keeping soft bedding and other items out of the Carolyn R. Ahlers-Schmidt, Ph.D.1, Christy Schunn, LSCSW2, crib, and avoiding infant overheating. -
(Publication Only) Corynebacterium Spp. and Arcanobacterium Haemolyticum Identification
R2737 Abstract (publication only) Corynebacterium spp. and Arcanobacterium haemolyticum identification. Usefulness of the Vitek 2 ANC card R. Soloaga*, N. Carrion, C. Barberis, M. Almuzara, L. Guelfand, J. Pidone, C. Vay (Buenos Aires, AR) Introduction: Corynebacterium diphtheriae and C.ulcerans may be isolated from suspected cases of classical diphtheria, cutaneous diphtheria and very rarely from other clinical infections. Non-diphtheric corynebacteria are opportunistic pathogens, especially in nosocomial setting where they have been associated with endocarditis, pulmonary infection, medical devices infections and urinary tract infection. A. haemolyticum infection manifests as exudative pharyngitis and tonsillitis accompanied by cervical lymphadenopathy and less commonly, the organism causes deep-seated infections and skin and soft-tissue infections Objective: The aim of this study was to determine the Vitek 2 ANC card (bioMèrieux, Marcy l’Etoile, France) performance for identification of the most frequently clinical relevant Corynebacterium species and Arcanobacterium haemolyticum Methods: Sixty-two unique clinical isolates (2 C. diphtheriae, 7 C. jeikeium, 10 C. amycolatum, 15 C.striatum, 12 C.urealyticum, 1 C.minutissimum, 8 C. pseudodiphtheriticum, 1 C. ulcerans and 6 Arcanobacterium haemolyticum) represented the 9 taxa included in the Vitek 2 ANC database and 6 strains represented related species not included in the database were analyzed in this study. All the strains were identified using 16S rRNA gene sequencing (16S) as the reference method. For Vitek identification, all the strains were isolated in pure culture on Columbia blood agar. After 24-48 h incubation to 35ºC in ambient air, a bacterial suspension was made in 0.45% aqueous ClNa and adjusted to a McFarland of 2.7-3.2 with Vitekk 2 Densicheck instrument (bioMérieux).The inoculated card was loaded into the Vitek 2C automated identification system according to the manufacturer´s instruction. -
Nontuberculous Mycobacteria (Ntm)
Ting-Shu Wu, M.D. Infection Control Committee Infect Dis, Int Med, Chang Gung Memorial Hospital, Linkou Medical Center, Tao-Yuan, Taiwan NTM Other than M. tuberculosis, M. africanum, M. bovis, M. caprae, M. microti, M. canettii, M. mungi, M. orygis, and M. pinnipedii (M. tuberculosis complex), and M. leprae. Previous names: atypical mycobacteria, mycobacteria other than M. tuberculosis (MOTT) Taxonomic Tree M. tuberculosis complex Mycobacteriaceae Mycobacterium M. leprae Nocardia NTM Actinomycetales Actinomycetaceae Actinomyces S. griseus Streptomycetaceae Streptomyces S. mediterranei Currently recognized species of the genus Mycobacteria isolated form humans Group Obligatory Facultative Potential Saprophyte Strict pathogens M. africanum M. bovis M. leprae M. tuberculosis M. ulcerans Photochromogens M. asciaticum M. kansasii M. marinum M. simiae Scotochromogens M. scrofulaceum M. gordonae M. szulgai M. flavescens M. xenopi Nonchromogens M. genavense M. avium M. gastri M. haemophilum M. nonchromogenicum M. intracellulare M. terrae M. malmoense M. triviale M. shimoidei Rapid growers M. chelonae M. fallax M. agri…….. M. fortuitum M. smegmatis Strict animal M. farcinogens M. microti pathogens M. lepraemurium M. paratuberculosis M. porcinum M. senegalense Runyon classification Class I (photochromogens) Class II (scotochromogens) Class III (nonchromogens) Class IV ( rapid growers) Structure A: plasma membrane B: complex polymer C: peptidoglycans D: arabinogalactans E: mycolic acids F: methoxy type & keto type G: glycolipid H: -
Arcanobacterium Haemolyticum Type Strain (11018)
Lawrence Berkeley National Laboratory Recent Work Title Complete genome sequence of Arcanobacterium haemolyticum type strain (11018). Permalink https://escholarship.org/uc/item/03f632gf Journal Standards in genomic sciences, 3(2) ISSN 1944-3277 Authors Yasawong, Montri Teshima, Hazuki Lapidus, Alla et al. Publication Date 2010-09-28 DOI 10.4056/sigs.1123072 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Standards in Genomic Sciences (2010) 3:126-135 DOI:10.4056/sigs.1123072 Complete genome sequence of Arcanobacterium T haemolyticum type strain (11018 ) Montri Yasawong1, Hazuki Teshima2,3, Alla Lapidus2, Matt Nolan2, Susan Lucas2, Tijana Glavina Del Rio2, Hope Tice2, Jan-Fang Cheng2, David Bruce2,3, Chris Detter2,3, Roxanne Tapia2,3, Cliff Han2,3, Lynne Goodwin2,3, Sam Pitluck2, Konstantinos Liolios2, Natalia Ivanova2, Konstantinos Mavromatis2, Natalia Mikhailova2, Amrita Pati2, Amy Chen4, Krishna Palaniappan4, Miriam Land2,5, Loren Hauser2,5, Yun-Juan Chang2,5, Cynthia D. Jeffries2,5, Manfred Rohde1, Johannes Sikorski6, Rüdiger Pukall6, Markus Göker6, Tanja Woyke2, James Bristow2, Jonathan A. Eisen2,7, Victor Markowitz4, Philip Hugenholtz2, Nikos C. Kyrpides2, and Hans-Peter Klenk6* 1 HZI – Helmholtz Centre for Infection Research, Braunschweig, Germany 2 DOE Joint Genome Institute, Walnut Creek, California, USA 3 Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA 4 Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA 5 Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA 6 DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany 7 University of California Davis Genome Center, Davis, California, USA *Corresponding author: Hans-Peter Klenk Keywords: obligate parasite, human pathogen, pharyngeal lesions, skin lesions, facultative anaerobe, Actinomycetaceae, Actinobacteria, GEBA Arcanobacterium haemolyticum (ex MacLean et al. -
INTERNATIONAL BULLETIN of BACTERIOLOGICAL NOMENCLATURE and TAXONOMY Vol
INTERNATIONAL BULLETIN OF BACTERIOLOGICAL NOMENCLATURE AND TAXONOMY Vol. 15, No. 3 July 15, 1965 pp. 143-163 THE CLASSIFICATION AND PHYLOGENETIC RELATIONSHIPS OF THE ACTINOMYCETALES ' Leo Pine and Lucille Georg Communicable Disease Center, Public Health Service, U. S. Department of Health, Education, and Welfare, Atlanta, Georgia SUMMARY. The taxonomic and phylogenetic re- lationships of members of the order Actino- mycetales have been examined. On the basis of cellular and colony morphology, cell wall composition, fermentation products, and cer- tain physiological characteristics, the taxa within the family Actinomycetaceae were divided into two groups. Each group was closely related to members of the family -Lactobacillaceae. One group consisted of Actinomyces israelii, -A. naeslundii, ,A. pro- pionicus, Nocardia dentocariosus and Odonto- myces viscosis ("hamster organism"). The second group consisted of bovis, ,A. erik- sonii, and Lactobacillus bifidusA. type 11 (k parabifidus). This latter organism was re- named Actinomyces pa.rabifidus nov. comb. because its morphological, physiological and biochemical characteristics related it to the members of both groups of the genus Actino- myces. The families Streptomycetaceae and Mycobacteriaceae appeared more closely re- lated to the family Corynebacteriaceae than to the family Actinomycetaceae. The use of certain criteria for classification and deter- mination of phylogenetic relationships was discussed. We have stressed those areas in which necessasy information is lacking. A report to -
Evaluation Ofapi Coryne System for Identifying Coryneform Bacteria
756 Y Clin Pathol 1994;47:756-759 Evaluation of API Coryne system for identifying coryneform bacteria J Clin Pathol: first published as 10.1136/jcp.47.8.756 on 1 August 1994. Downloaded from A Soto, J Zapardiel, F Soriano Abstract that are aerobe or facultatively aerobe, non- Aim-To identify rapidly and accurately spore forming organisms of the following gen- coryneform bacteria, using a commercial era: Corynebacterium, Listeria, Actinomyces, strip system. Arcanobacterium, Erysipelothrix, Oerskovia, Methods-Ninety eight strains of Cory- Brevibacterium and Rhodococcus. It also per- nebacterium species and 62 additional mits the identification of Gardnerella vaginalis strains belonging to genera Erysipelorix, which often has a diphtheroid appearance and Oerskovia, Rhodococcus, Actinomyces, a variable Gram stain. Archanobacterium, Gardnerella and We studied 160 organisms in total from dif- Listeria were studied. Bacteria were ferent species of the Corynebacterium genus, as identified using conventional biochemi- well as from other morphological related gen- cal tests and a commercial system (API- era or groups, some of them not included in Coryne, BioMerieux, France). Fresh rab- the API Coryne database. bit serum was added to fermentation tubes for Gardnerella vaginalis isolates. Results-One hundred and five out ofthe Methods 160 (65.7%) organisms studied were cor- The study was carried out on Gram positive rectly and completely identified by the bacilli belonging to the genera Coryne- API Coryne system. Thirty five (21.8%) bacterium, Erysipelothrix, Oerskovia, Rhodococcus, more were correctly identified with addi- Actinomyces, Arcanobacterium, Gardnerella and tional tests. Seventeen (10-6%) organisms Listeria included in the API Coryne database were not identified by the system and (table 1). -
From Genotype to Phenotype: Inferring Relationships Between Microbial Traits and Genomic Components
From genotype to phenotype: inferring relationships between microbial traits and genomic components Inaugural-Dissertation zur Erlangung des Doktorgrades der Mathematisch-Naturwissenschaftlichen Fakult¨at der Heinrich-Heine-Universit¨atD¨usseldorf vorgelegt von Aaron Weimann aus Oberhausen D¨usseldorf,29.08.16 aus dem Institut f¨urInformatik der Heinrich-Heine-Universit¨atD¨usseldorf Gedruckt mit der Genehmigung der Mathemathisch-Naturwissenschaftlichen Fakult¨atder Heinrich-Heine-Universit¨atD¨usseldorf Referent: Prof. Dr. Alice C. McHardy Koreferent: Prof. Dr. Martin J. Lercher Tag der m¨undlichen Pr¨ufung: 24.02.17 Selbststandigkeitserkl¨ arung¨ Hiermit erkl¨areich, dass ich die vorliegende Dissertation eigenst¨andigund ohne fremde Hilfe angefertig habe. Arbeiten Dritter wurden entsprechend zitiert. Diese Dissertation wurde bisher in dieser oder ¨ahnlicher Form noch bei keiner anderen Institution eingereicht. Ich habe bisher keine erfolglosen Promotionsversuche un- ternommen. D¨usseldorf,den . ... ... ... (Aaron Weimann) Statement of authorship I hereby certify that this dissertation is the result of my own work. No other person's work has been used without due acknowledgement. This dissertation has not been submitted in the same or similar form to other institutions. I have not previously failed a doctoral examination procedure. Summary Bacteria live in almost any imaginable environment, from the most extreme envi- ronments (e.g. in hydrothermal vents) to the bovine and human gastrointestinal tract. By adapting to such diverse environments, they have developed a large arsenal of enzymes involved in a wide variety of biochemical reactions. While some such enzymes support our digestion or can be used for the optimization of biotechnological processes, others may be harmful { e.g. mediating the roles of bacteria in human diseases. -
Mycobacterium Bovis BCG As a Delivery System for the Dtb Gene Antigen from Diphtheria Toxin
American Journal of Molecular Biology, 2017, 7, 176-189 http://www.scirp.org/journal/ajmb ISSN Online: 2161-6663 ISSN Print: 2161-6620 Mycobacterium bovis BCG as a Delivery System for the dtb Gene Antigen from Diphtheria Toxin Dilzamar V. Nascimento1,4, Odir A. Dellagostin2, Denise C. S. Matos3, Douglas McIntosh5, Raphael Hirata Jr.1, Geraldo M. B. Pereira1,4, Ana Luíza Mattos-Guaraldi1, Geraldo R. G. Armôa4* 1Faculdade de Ciências Médicas, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, Brazil 2Núcleo de Biotecnologia, Universidade Federal de Pelotas, Campus Universitário, Pelotas, Brazil 3Instituto de Tecnologia em Imunobiológicos, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil 4Instituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil 5Instituto de Veterinária, Universidade Federal Rural do Rio de Janeiro, Seropedica, Rio de Janeiro, Brazil How to cite this paper: Nascimento, D.V., Abstract Dellagostin, O.A., Matos, D.C.S., McIntosh, D., Hirata Jr., R., Pereira, G.M.B., Mat- Diphtheria is a fulminant bacterial disease caused by toxigenic strains of Co- tos-Guaraldi, A.L. and Armôa, G.R.G. rynebacterium diphtheriae whose local and systemic manifestations are due to (2017) Mycobacterium bovis BCG as a the action of the diphtheria toxin (DT). The vaccine which is used to prevent Delivery System for the dtb Gene Antigen from Diphtheria Toxin. American Journal diphtheria worldwide is a toxoid obtained by detoxifying DT. Although asso- of Molecular Biology, 7, 176-189. ciated with high efficacy in the prevention of disease, the current an- https://doi.org/10.4236/ajmb.2017.74014 ti-diphtheria vaccine, one of the components of DTP (diphtheria, tetanus and Received: April 17, 2017 pertussis triple vaccine), may present post vaccination effects such as toxicity Accepted: September 27, 2017 and reactogenicity resulting from the presence of contaminants in the vaccine Published: September 30, 2017 that originated during the process of production and/or detoxification. -
Diversity and Prevalence of ANTAR Rnas Across Actinobacteria
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.11.335034; this version posted October 11, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Diversity and prevalence of ANTAR RNAs across actinobacteria Dolly Mehta1,2 and Arati Ramesh1,+ 1National Centre for Biological Sciences, Tata Institute of Fundamental Research, GKVK Campus, Bellary Road, Bangalore, India 560065. 2SASTRA University, Tirumalaisamudram, Thanjavur – 613401. +Corresponding Author: Arati Ramesh National Centre for Biological Sciences GKVK Campus, Bellary Road Bangalore, 560065 Tel. 91-80-23666930 e-mail: [email protected] Running title: Identification of ANTAR RNAs across Actinobacteria Keywords: ANTAR protein:RNA regulatory system, structured RNA, actinobacteria 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.10.11.335034; this version posted October 11, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. ABSTRACT Computational approaches are often used to predict regulatory RNAs in bacteria, but their success is limited to RNAs that are highly conserved across phyla, in sequence and structure. The ANTAR regulatory system consists of a family of RNAs (the ANTAR-target RNAs) that selectively recruit ANTAR proteins. This protein-RNA complex together regulates genes at the level of translation or transcriptional elongation. -
Paratuberculosis
CLINICAL MICROBIOLOGY REVIEWS, JUlY 1994, p. 328-345 Vol1. 7, No. 3 0893-8512/94/$04.00+0 Copyright © 1994, American Society for Microbiology Paratuberculosis CARLO COCITO,* PHILIPPE GILOT, MARC COENE, MYRIAM DE KESEL, PASCALE POUPART, AND PASCAL VANNUFFEL Microbiology and Genetics Unit, Institute of Cellular Pathology, University of Louvain, Medical School, Brussels 1200, Belgium HISTORICAL INTRODUCTION................................................................................. 328 CLINICAL STAGES OF JOHNE'S DISEASE AND HOST RANGE..................................................................328 MICROBIOLOGICAL ASPECTS ................................................................................. 329 GENOMES OF M. PARATUBERCULOSIS AND RELATED MICROORGANISMS ........330 MAJOR IMMUNOLOGICALLY ACTIVE COMPONENTS OF M. PARATUBERCULOSIS AND OTHER MYCOBACTERIA ................................................................................. 331 IMMUNOLOGICAL ASPECTS................................................................................. 332 DIAGNOSTIC TOOLS ................................................................................. 332 A36 ANTIGEN COMPLEX OF M. PARATUBERCULOSIS AND TMA COMPLEXES FROM OTHER MYCOBACTERIA ................................................................................. 333 CLONED GENES OF M. PARATUBERCULOSIS ................................................................................ 334 THE 34-kDa PROTEIN: IDENTIFICATION AND CLONING OF THE GENE ..............................................335