Arcanobacterium Pyogenes Sepsis in Farmer, Brazil
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ID 2 | Issue No: 4.1 | Issue Date: 29.10.14 | Page: 1 of 24 © Crown Copyright 2014 Identification of Corynebacterium Species
UK Standards for Microbiology Investigations Identification of Corynebacterium species Issued by the Standards Unit, Microbiology Services, PHE Bacteriology – Identification | ID 2 | Issue no: 4.1 | Issue date: 29.10.14 | Page: 1 of 24 © Crown copyright 2014 Identification of Corynebacterium species Acknowledgments UK Standards for Microbiology Investigations (SMIs) are developed under the auspices of Public Health England (PHE) working in partnership with the National Health Service (NHS), Public Health Wales and with the professional organisations whose logos are displayed below and listed on the website https://www.gov.uk/uk- standards-for-microbiology-investigations-smi-quality-and-consistency-in-clinical- laboratories. SMIs are developed, reviewed and revised by various working groups which are overseen by a steering committee (see https://www.gov.uk/government/groups/standards-for-microbiology-investigations- steering-committee). The contributions of many individuals in clinical, specialist and reference laboratories who have provided information and comments during the development of this document are acknowledged. We are grateful to the Medical Editors for editing the medical content. For further information please contact us at: Standards Unit Microbiology Services Public Health England 61 Colindale Avenue London NW9 5EQ E-mail: [email protected] Website: https://www.gov.uk/uk-standards-for-microbiology-investigations-smi-quality- and-consistency-in-clinical-laboratories UK Standards for Microbiology Investigations are produced in association with: Logos correct at time of publishing. Bacteriology – Identification | ID 2 | Issue no: 4.1 | Issue date: 29.10.14 | Page: 2 of 24 UK Standards for Microbiology Investigations | Issued by the Standards Unit, Public Health England Identification of Corynebacterium species Contents ACKNOWLEDGMENTS ......................................................................................................... -
Kansas Journal of Medicine, Volume 11 Issue 1
VOLUME 11 • ISSUE 1 • Feb. 2018 WHAT’S INSIDE: ORIGINAL RESEARCH • CASE STUDIES • REVIEW TABLE OF CONTENTS ORIGINAL RESEARCH 1 Safe Sleep Practices of Kansas Birthing Hospitals Carolyn R. Ahlers-Schmidt, Ph.D., Christy Schunn, LSCSW, Cherie Sage, M.S., Matthew Engel, MPH, Mary Benton, Ph.D. CASE STUDIES 5 Neck Trauma and Extra-tracheal Intubation Vinh K. Pham, M.D., Justin C. Sandall, D.O. 8 Strongyloides Duodenitis in an Immunosuppressed Patient with Lupus Nephritis Ramprasad Jegadeesan, M.D., Tharani Sundararajan, MBBS, Roshni Jain, MS-3, Tejashree Karnik, M.D., Zalina Ardasenov, M.D., Elena Sidorenko, M.D. 11 Arcanobacterium Brain Abscesses, Subdural Empyema, and Bacteremia Complicating Epstein-Barr Virus Mononucleosis Victoria Poplin, M.D., David S. McKinsey, M.D. REVIEW 15 Transgender Competent Provider: Identifying Transgender Health Needs, Health Disparities, and Health Coverage Sarah Houssayni, M.D., Kari Nilsen, Ph.D. 20 The Increased Vulnerability of Refugee Population to Mental Health Disorders Sameena Hameed, Asad Sadiq, MBChB, MRCPsych, Amad U. Din, M.D., MPH KANSAS JOURNAL of MEDICINE deaths attributed to SIDS had one or more factors contributing to an unsafe sleep environment.3 The American Academy of Pediatrics (AAP) recommendations for a safe infant sleeping environment delineate a number of modifi- able factors to reduce the risk of sleep-related infant deaths.4 Factors Safe Sleep Practices of Kansas Birthing include back sleep only, room-sharing without bed-sharing, use of a Hospitals firm sleep surface, keeping soft bedding and other items out of the Carolyn R. Ahlers-Schmidt, Ph.D.1, Christy Schunn, LSCSW2, crib, and avoiding infant overheating. -
(Publication Only) Corynebacterium Spp. and Arcanobacterium Haemolyticum Identification
R2737 Abstract (publication only) Corynebacterium spp. and Arcanobacterium haemolyticum identification. Usefulness of the Vitek 2 ANC card R. Soloaga*, N. Carrion, C. Barberis, M. Almuzara, L. Guelfand, J. Pidone, C. Vay (Buenos Aires, AR) Introduction: Corynebacterium diphtheriae and C.ulcerans may be isolated from suspected cases of classical diphtheria, cutaneous diphtheria and very rarely from other clinical infections. Non-diphtheric corynebacteria are opportunistic pathogens, especially in nosocomial setting where they have been associated with endocarditis, pulmonary infection, medical devices infections and urinary tract infection. A. haemolyticum infection manifests as exudative pharyngitis and tonsillitis accompanied by cervical lymphadenopathy and less commonly, the organism causes deep-seated infections and skin and soft-tissue infections Objective: The aim of this study was to determine the Vitek 2 ANC card (bioMèrieux, Marcy l’Etoile, France) performance for identification of the most frequently clinical relevant Corynebacterium species and Arcanobacterium haemolyticum Methods: Sixty-two unique clinical isolates (2 C. diphtheriae, 7 C. jeikeium, 10 C. amycolatum, 15 C.striatum, 12 C.urealyticum, 1 C.minutissimum, 8 C. pseudodiphtheriticum, 1 C. ulcerans and 6 Arcanobacterium haemolyticum) represented the 9 taxa included in the Vitek 2 ANC database and 6 strains represented related species not included in the database were analyzed in this study. All the strains were identified using 16S rRNA gene sequencing (16S) as the reference method. For Vitek identification, all the strains were isolated in pure culture on Columbia blood agar. After 24-48 h incubation to 35ºC in ambient air, a bacterial suspension was made in 0.45% aqueous ClNa and adjusted to a McFarland of 2.7-3.2 with Vitekk 2 Densicheck instrument (bioMérieux).The inoculated card was loaded into the Vitek 2C automated identification system according to the manufacturer´s instruction. -
Mycobacterium Tuberculosis: Assessing Your Laboratory
A more recent version of this document exists. View the 2019 Edition. Mycobacterium tuberculosis: Assessing Your Laboratory APHL Tool 2013 EDITION The following individuals contributed to the preparation of this edition of Mycobacterium tuberculosis: Assessing Your Laboratory Phyllis Della-Latta, PhD Columbia Presbyterian Medical Center Loretta Gjeltena, MA, MT(ASCP) National Laboratory Training Network Kenneth Jost, Jr. Texas Department of State Health Services Beverly Metchock, DrPH Centers for Disease Control and Prevention Glenn D. Roberts, PhD Mayo Clinic Max Salfinger, MD Florida Department of Health, Florida Bureau of Laboratories Dale Schwab, PhD, D(ABMM) Quest Diagnostics Julie Tans-Kersten Wisconsin State Laboratory of Hygiene Anthony Tran, MPH, MT(ASCP) Association of Public Health Laboratories David Warshauer, PhD, D(ABMM) Wisconsin State Laboratory of Hygiene Gail Woods, MD University of Texas Medical Branch Kelly Wroblewski, MPH, MT(ASCP) Association of Public Health Laboratories This publication was supported by Cooperative Agreement Number #1U60HM000803 between the Centers for Disease Control and Prevention (CDC) and the Association of Public Health Laboratories (APHL). Its contents are solely the responsibility of the authors and do not necessarily represent the official views of CDC. © Copyright 2013, Association of Public Health Laboratories. All Rights Reserved. Table of Contents 1.0 Introduction ...................................................4 Background ...................................................4 Intended -
Arcanobacterium Haemolyticum Type Strain (11018)
Lawrence Berkeley National Laboratory Recent Work Title Complete genome sequence of Arcanobacterium haemolyticum type strain (11018). Permalink https://escholarship.org/uc/item/03f632gf Journal Standards in genomic sciences, 3(2) ISSN 1944-3277 Authors Yasawong, Montri Teshima, Hazuki Lapidus, Alla et al. Publication Date 2010-09-28 DOI 10.4056/sigs.1123072 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Standards in Genomic Sciences (2010) 3:126-135 DOI:10.4056/sigs.1123072 Complete genome sequence of Arcanobacterium T haemolyticum type strain (11018 ) Montri Yasawong1, Hazuki Teshima2,3, Alla Lapidus2, Matt Nolan2, Susan Lucas2, Tijana Glavina Del Rio2, Hope Tice2, Jan-Fang Cheng2, David Bruce2,3, Chris Detter2,3, Roxanne Tapia2,3, Cliff Han2,3, Lynne Goodwin2,3, Sam Pitluck2, Konstantinos Liolios2, Natalia Ivanova2, Konstantinos Mavromatis2, Natalia Mikhailova2, Amrita Pati2, Amy Chen4, Krishna Palaniappan4, Miriam Land2,5, Loren Hauser2,5, Yun-Juan Chang2,5, Cynthia D. Jeffries2,5, Manfred Rohde1, Johannes Sikorski6, Rüdiger Pukall6, Markus Göker6, Tanja Woyke2, James Bristow2, Jonathan A. Eisen2,7, Victor Markowitz4, Philip Hugenholtz2, Nikos C. Kyrpides2, and Hans-Peter Klenk6* 1 HZI – Helmholtz Centre for Infection Research, Braunschweig, Germany 2 DOE Joint Genome Institute, Walnut Creek, California, USA 3 Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA 4 Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA 5 Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA 6 DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany 7 University of California Davis Genome Center, Davis, California, USA *Corresponding author: Hans-Peter Klenk Keywords: obligate parasite, human pathogen, pharyngeal lesions, skin lesions, facultative anaerobe, Actinomycetaceae, Actinobacteria, GEBA Arcanobacterium haemolyticum (ex MacLean et al. -
Biosynthesis of Isonitrile Lipopeptides by Conserved Nonribosomal Peptide Synthetase Gene Clusters in Actinobacteria
Biosynthesis of isonitrile lipopeptides by conserved nonribosomal peptide synthetase gene clusters in Actinobacteria Nicholas C. Harrisa, Michio Satob, Nicolaus A. Hermanc, Frederick Twiggc, Wenlong Caic, Joyce Liud, Xuejun Zhuc, Jordan Downeyc, Ryan Khalafe, Joelle Martine, Hiroyuki Koshinof, and Wenjun Zhangc,g,1 aDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720; bDepartment of Pharmaceutical Sciences, University of Shizuoka, Shizuoka 422-8526, Japan; cDepartment of Chemical and Biomolecular Engineering, University of California, Berkeley, CA 94720; dDepartment of Bioengineering, University of California, Berkeley, CA 94720; eDepartment of Chemistry, University of California, Berkeley, CA 94720; fRIKEN Physical Center for Sustainable Resource Science, Wako, Saitama 3510198, Japan; and gChan Zuckerberg Biohub, San Francisco, CA 94158 Edited by Jerrold Meinwald, Cornell University, Ithaca, NY, and approved May 26, 2017 (received for review March 27, 2017) A putative lipopeptide biosynthetic gene cluster is conserved in many dependent oxidase, a fatty acyl-CoA thioesterase, an acyl-acyl species of Actinobacteria, including Mycobacterium tuberculosis and carrier protein ligase (AAL), an acyl carrier protein (ACP), and M. marinum, but the specific function of the encoding proteins has a single- or dimodule NRPS, respectively (Fig. 1 and SI Appendix, been elusive. Using both in vivo heterologous reconstitution and Fig. S1). Although all of these five proteins are typically involved in in vitro biochemical analyses, we have revealed that the five encod- secondary metabolite biosynthesis, the identity of the correspond- ing biosynthetic enzymes are capable of synthesizing a family of ing metabolite and the specific function of these proteins have not isonitrile lipopeptides (INLPs) through a thio-template mechanism. -
Is a Novel Proteasome Interactor in Mycobacteria and Related
RESEARCH ARTICLE Cdc48-like protein of actinobacteria (Cpa) is a novel proteasome interactor in mycobacteria and related organisms Michal Ziemski1, Ahmad Jomaa1, Daniel Mayer2, Sonja Rutz1, Christoph Giese1, Dmitry Veprintsev2†, Eilika Weber-Ban1* 1Institute of Molecular Biology & Biophysics, ETH Zurich, Zurich, Switzerland; 2Laboratory of Biomolecular Research, Paul Scherrer Institute, ETH Zurich, Villigen, Switzerland Abstract Cdc48 is a AAA+ ATPase that plays an essential role for many cellular processes in eukaryotic cells. An archaeal homologue of this highly conserved enzyme was shown to directly interact with the 20S proteasome. Here, we analyze the occurrence and phylogeny of a Cdc48 homologue in Actinobacteria and assess its cellular function and possible interaction with the bacterial proteasome. Our data demonstrate that Cdc48-like protein of actinobacteria (Cpa) forms hexameric rings and that the oligomeric state correlates directly with the ATPase activity. Furthermore, we show that the assembled Cpa rings can physically interact with the 20S core particle. Comparison of the Mycobacterium smegmatis wild-type with a cpa knockout strain under carbon starvation uncovers significant changes in the levels of around 500 proteins. Pathway mapping of the observed pattern of changes identifies ribosomal proteins as a particular hotspot, *For correspondence: [email protected] pointing amongst others toward a role of Cpa in ribosome adaptation during starvation. DOI: https://doi.org/10.7554/eLife.34055.001 Present address: †Centre of Membrane Proteins and Receptors, University of Birmingham and University of Introduction Nottingham, Nottingham, United Kingdom Energy-dependent chaperones and chaperone-protease complexes comprise important cellular components guarding protein homeostasis in all kingdoms of life. -
Evaluation Ofapi Coryne System for Identifying Coryneform Bacteria
756 Y Clin Pathol 1994;47:756-759 Evaluation of API Coryne system for identifying coryneform bacteria J Clin Pathol: first published as 10.1136/jcp.47.8.756 on 1 August 1994. Downloaded from A Soto, J Zapardiel, F Soriano Abstract that are aerobe or facultatively aerobe, non- Aim-To identify rapidly and accurately spore forming organisms of the following gen- coryneform bacteria, using a commercial era: Corynebacterium, Listeria, Actinomyces, strip system. Arcanobacterium, Erysipelothrix, Oerskovia, Methods-Ninety eight strains of Cory- Brevibacterium and Rhodococcus. It also per- nebacterium species and 62 additional mits the identification of Gardnerella vaginalis strains belonging to genera Erysipelorix, which often has a diphtheroid appearance and Oerskovia, Rhodococcus, Actinomyces, a variable Gram stain. Archanobacterium, Gardnerella and We studied 160 organisms in total from dif- Listeria were studied. Bacteria were ferent species of the Corynebacterium genus, as identified using conventional biochemi- well as from other morphological related gen- cal tests and a commercial system (API- era or groups, some of them not included in Coryne, BioMerieux, France). Fresh rab- the API Coryne database. bit serum was added to fermentation tubes for Gardnerella vaginalis isolates. Results-One hundred and five out ofthe Methods 160 (65.7%) organisms studied were cor- The study was carried out on Gram positive rectly and completely identified by the bacilli belonging to the genera Coryne- API Coryne system. Thirty five (21.8%) bacterium, Erysipelothrix, Oerskovia, Rhodococcus, more were correctly identified with addi- Actinomyces, Arcanobacterium, Gardnerella and tional tests. Seventeen (10-6%) organisms Listeria included in the API Coryne database were not identified by the system and (table 1). -
Mycobacterium Bovis Isolates with M. Tuberculosis Specific Characteristics
gene (6). Furthermore, MTBC isolates can be differentiat- Mycobacterium ed by large sequence polymorphisms or regions of differ- ence (RD), and according to their distribution in the bovis Isolates with genome, a new phylogenetic scenario for the different species of the MTBC has been suggested (7–9). The pres- M. tuberculosis ence or absence of particular deletions has been proposed as being discriminative, e.g., lack of TdB1 for M. tubercu- Specific losis or lack of RD12 for M. bovis. In routine diagnostics, the combination of phenotypic Characteristics characteristics and biochemical features is sufficient to dif- ferentiate clinical M. bovis isolates, and in general, the Tanja Kubica,* Rimma Agzamova,† results obtained are unambiguous. However, here we Abigail Wright,‡ Galimzhan Rakishev,† describe the characteristics of 8 strains of the MTBC that Sabine Rüsch-Gerdes,* and Stefan Niemann* showed an unusual combination of phenotypic and bio- Our study is the first report of exceptional chemical attributes of both M. bovis and M. tuberculosis. Mycobacterium bovis strains that have some characteris- Molecular analyses confirmed the strains as M. bovis, tics of M. tuberculosis. The strains were isolated from 8 which in part have phenotypic and biochemical properties patients living in Kazakhstan. While molecular markers of M. tuberculosis. were typical for M. bovis, growth characteristics and bio- chemical test results were intermediate between M. bovis The Study and M. tuberculosis. During a previous investigation of 179 drug-resistant isolates from Kazakhstan (10), we determined the presence ycobacterium bovis causes tuberculosis (TB) mainly of 8 strains showing monoresistance to pyrazinamide. M in cattle but has a broad host range and causes dis- Kazakhstan is the largest of the central Asian republics and ease similar to that caused by M. -
Diversity and Prevalence of ANTAR Rnas Across Actinobacteria
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.11.335034; this version posted October 11, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Diversity and prevalence of ANTAR RNAs across actinobacteria Dolly Mehta1,2 and Arati Ramesh1,+ 1National Centre for Biological Sciences, Tata Institute of Fundamental Research, GKVK Campus, Bellary Road, Bangalore, India 560065. 2SASTRA University, Tirumalaisamudram, Thanjavur – 613401. +Corresponding Author: Arati Ramesh National Centre for Biological Sciences GKVK Campus, Bellary Road Bangalore, 560065 Tel. 91-80-23666930 e-mail: [email protected] Running title: Identification of ANTAR RNAs across Actinobacteria Keywords: ANTAR protein:RNA regulatory system, structured RNA, actinobacteria 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.10.11.335034; this version posted October 11, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. ABSTRACT Computational approaches are often used to predict regulatory RNAs in bacteria, but their success is limited to RNAs that are highly conserved across phyla, in sequence and structure. The ANTAR regulatory system consists of a family of RNAs (the ANTAR-target RNAs) that selectively recruit ANTAR proteins. This protein-RNA complex together regulates genes at the level of translation or transcriptional elongation. -
Zoonotic Tuberculosis in Mammals, Including Bovine and Caprine
Zoonotic Importance Several closely related bacteria in the Mycobacterium tuberculosis complex Tuberculosis in cause tuberculosis in mammals. Each organism is adapted to one or more hosts, but can also cause disease in other species. The two agents usually found in domestic Mammals, animals are M. bovis, which causes bovine tuberculosis, and M. caprae, which is adapted to goats but also circulates in some cattle herds. Both cause economic losses including in livestock from deaths, disease, lost productivity and trade restrictions. They can also affect other animals including pets, zoo animals and free-living wildlife. M. bovis Bovine and is reported to cause serious issues in some wildlife, such as lions (Panthera leo) in Caprine Africa or endangered Iberian lynx (Lynx pardinus). Three organisms that circulate in wildlife, M. pinnipedii, M. orygis and M. microti, are found occasionally in livestock, Tuberculosis pets and people. In the past, M. bovis was an important cause of tuberculosis in humans worldwide. It was especially common in children who drank unpasteurized milk. The Infections caused by advent of pasteurization, followed by the establishment of control programs in cattle, Mycobacterium bovis, have made clinical cases uncommon in many countries. Nevertheless, this disease is M. caprae, M. pinnipedii, still a concern: it remains an important zoonosis in some impoverished nations, while wildlife reservoirs can prevent complete eradication in developed countries. M. M. orygis and M. microti caprae has also emerged as an issue in some areas. This organism is now responsible for a significant percentage of the human tuberculosis cases in some European countries where M. bovis has been controlled. -
Cytopathology: Mycobacterium Avium Complex Infection with Non-Necrotizing Granulomatous Inflammation Involving a Lymph Node
DEPARTMENT OF PATHOLOGY Case of the Week Cytopathology: Mycobacterium avium complex infection with non-necrotizing granulomatous inflammation involving a lymph node Prepared by: Andrea Hernandez, DO (resident), Dianne Grunes, MD (fellow), Barbara Bengston, CT, and Melissa Yee-Chang, DO (attending) February 16, 2016 History The patient is a 35 year old HIV-positive male who presents to the emergency department with altered mental status. He complained of low grade fever, productive cough and subjective weight loss. Oral candidiasis and painful cervical lymphadenopathy were noted on physical exam. His CD4 count was 40 cells/µL, indicating progression to AIDS. Chest X-ray demonstrated consolidation in the lower lobe of the left lung. An ultrasound guided aspiration biopsy of the cervical lymph node is performed. DC 2/4/2021 Figure. 1: (Diff-Quik stain, 400x magnification) Figure. 2: (Diff-Quik stain, 1000x magnification) DC 2/4/2021 Figure 3: (PAP stain, 40x magnification) Figure 1 - 3 Figure 1: Fine needle aspirate from the lymph node showing a histiocyte containing numerous outlines of intracellular bacilli within the cytoplasm. Figure 2: A histiocyte with abundant intracellular unstained bacilli which appear as slightly curved, colorless rods, displaying the “negative image” of the mycobacteria. Due to the striated appearance of the cellular cytoplasm, these histiocytes may be referred to as “pseudo-Gaucher cells”. Extracellular, negative-image mycobacteria are also seen within the background. Figure 3:Loose aggregate of epitheliod histiocytes forming a vague non-necrotizing granuloma, however, the mycobacteria are not readily identified as on the Diff Quik- stained smear. Diagnosis Mycobacterium avium complex infection with non-necrotizing granulomatous inflammation involving a lymph node Discussion Mycobacterium avium complex (MAC) infections are caused by one of two mycobacterial species: M.