In Vivo and in Vitro Analysis of Dll1 and Pax6 Function in the Adult Mouse Pancreas
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TECHNISCHE UNIVERSITÄT MÜNCHEN Lehrstuhl für Experimentelle Genetik In vivo and in vitro analysis of Dll1 and Pax6 function in the adult mouse pancreas Davide Cavanna Vollständiger Abdruck der von der Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt der Technischen Universität München zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften genehmigten Dissertation. Vorsitzender: Univ.-Prof. Dr. D. Langosch Prüfer der Dissertation: 1. Univ.-Prof. Dr. M. Hrabé de Angelis 2. Univ.-Prof. A. Schnieke, Ph.D. Die Dissertation wurde am 03.07.2013 bei der Technischen Universität München eingereicht und durch die Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt am 10.12.2013 angenommen. I. Table of contents I. TABLE OF CONTENTS .................................................................................................. I II. FIGURES AND TABLES ................................................................................................ V III. ABBREVIATIONS ................................................................................................. VIII IV. PUBLICATIONS, TALKS, AND POSTERS ................................................................... XI V. ACKNOWLEDGMENTS .............................................................................................. XII VI. AFFIRMATION ..................................................................................................... XIV 1. SUMMARY/ZUSAMMENFASSUNG ............................................................................. 1 2. INTRODUCTION ......................................................................................................... 3 2.1 Notch signaling ....................................................................................................................................... 3 2.1.1 Notch signaling components and function .......................................................................................... 3 2.1.2 Ligand-side non-canonical Notch signaling .......................................................................................... 6 2.2 The pancreas and the insulin-producing β-cells ....................................................................................... 8 2.2.1 Organ development ............................................................................................................................. 8 2.2.1.1 Pancreatic endocrine development ........................................................................................... 8 2.2.1.2 Notch signaling in pancreatic development ............................................................................. 10 2.2.2 The adult pancreas ............................................................................................................................. 14 2.2.2.1 Pancreatic anatomy .................................................................................................................. 14 2.2.2.2 Pancreatic β-cell function ......................................................................................................... 15 2.3 Diabetes Mellitus .................................................................................................................................. 18 2.3.1 Overview ............................................................................................................................................ 18 2.3.2 The β-cell in Type 2 diabetes ............................................................................................................. 19 2.3.3 Notch signaling in diabetes and the adult pancreas .......................................................................... 21 2.4 The Pax6Leca2 mouse model ................................................................................................................... 23 2.5 Thesis outline ........................................................................................................................................ 25 3. MATERIALS AND METHODS ..................................................................................... 26 3.1 Materials ............................................................................................................................................... 26 3.1.1 Chemicals ........................................................................................................................................... 26 3.1.2 Buffers and solutions ......................................................................................................................... 26 3.1.3 Enzymes and antibodies..................................................................................................................... 29 3.1.4 Molecular biology reagents ............................................................................................................... 29 3.1.5 Kits...................................................................................................................................................... 30 - I - 3.1.6 Plasmids ............................................................................................................................................. 30 3.1.7 Oligonucleotide primers .................................................................................................................... 31 3.1.7.1 Mus musculus primers ............................................................................................................. 31 3.1.7.1.1 Primers for qRT-PCR (housekeeping genes) ........................................................................ 31 3.1.7.1.2 Primers for qRT-PCR (genes of interest) .............................................................................. 32 3.1.7.1.3 Primers for PCR .................................................................................................................... 33 3.1.7.2 Rattus Norvegicus primers ....................................................................................................... 33 3.1.7.2.1 Primers for qRT-PCR (housekeeping genes) ........................................................................ 33 3.1.7.2.2 Primers for qRT-PCR (genes of interest) .............................................................................. 34 3.1.8 Mouse strains ..................................................................................................................................... 34 3.1.9 Cell lines ............................................................................................................................................. 34 3.2 Methods ............................................................................................................................................... 35 3.2.1 Isolation and purification methods .................................................................................................... 35 3.2.1.1 DNA isolation ............................................................................................................................ 35 3.2.1.2 RNA isolation ............................................................................................................................ 35 3.2.1.3 Protein isolation ....................................................................................................................... 36 3.2.2 Molecular methods ............................................................................................................................ 36 3.2.2.1 Polymerase Chain Reaction (PCR) ............................................................................................ 36 3.2.2.2 cDNA synthesis ......................................................................................................................... 37 3.2.2.3 Quantitative real-time PCR (qRT-PCR) ...................................................................................... 38 3.2.2.3.1 General strategy .................................................................................................................. 38 3.2.2.3.2 Reaction conditions ............................................................................................................. 39 3.2.2.3.3 Data analysis ........................................................................................................................ 40 3.2.2.4 Whole transcriptome microarray analysis................................................................................ 41 3.2.2.5 SDS Polyacrylamide Gel Electrophoresis (SDS-PAGE) ............................................................... 46 3.2.2.6 Western Blot ............................................................................................................................. 46 3.2.2.7 Mouse Insulin ELISA .................................................................................................................. 47 3.2.3 Cell culture methods .......................................................................................................................... 48 3.2.3.1 INS-1E cell culture ..................................................................................................................... 48 3.2.3.2 INS-1E pseudo-islets ................................................................................................................. 48 3.2.3.3 Transfection of INS-1E cells .....................................................................................................