Three Unusual New Legionella Species
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NCTC) Bacterial Strain Equivalents to American Type Culture Collection (ATCC) Bacterial Strains
This list shows National Collection of Type Cultures (NCTC) bacterial strain equivalents to American Type Culture Collection (ATCC) bacterial strains. NCTC Number CurrentName ATCC Number NCTC 7212 Acetobacter pasteurianus ATCC 23761 NCTC 10138 Acholeplasma axanthum ATCC 25176 NCTC 10171 Acholeplasma equifetale ATCC 29724 NCTC 10128 Acholeplasma granularum ATCC 19168 NCTC 10172 Acholeplasma hippikon ATCC 29725 NCTC 10116 Acholeplasma laidlawii ATCC 23206 NCTC 10134 Acholeplasma modicum ATCC 29102 NCTC 10188 Acholeplasma morum ATCC 33211 NCTC 10150 Acholeplasma oculi ATCC 27350 NCTC 10198 Acholeplasma parvum ATCC 29892 NCTC 8582 Achromobacter denitrificans ATCC 15173 NCTC 10309 Achromobacter metalcaligenes ATCC 17910 NCTC 10807 Achromobacter xylosoxidans subsp. xylosoxidans ATCC 27061 NCTC 10808 Achromobacter xylosoxidans subsp. xylosoxidans ATCC 17062 NCTC 10809 Achromobacter xylosoxidans subsp. xylosoxidans ATCC 27063 NCTC 12156 Acinetobacter baumannii ATCC 19606 NCTC 10303 Acinetobacter baumannii ATCC 17904 NCTC 7844 Acinetobacter calcoaceticus ATCC 15308 NCTC 12983 Acinetobacter calcoaceticus ATCC 23055 NCTC 8102 acinetobacter dna group 13 ATCC 17903 NCTC 10304 Acinetobacter genospecies 13 ATCC 17905 NCTC 10306 Acinetobacter haemolyticus ATCC 17907 NCTC 10305 Acinetobacter haemolyticus subsp haemolyticus ATCC 17906 NCTC 10308 Acinetobacter johnsonii ATCC 17909 NCTC 10307 Acinetobacter junii ATCC 17908 NCTC 5866 Acinetobacter lwoffii ATCC 15309 NCTC 12870 Actinobacillus delphinicola ATCC 700179 NCTC 8529 Actinobacillus equuli ATCC 19392 -
Legionella Shows a Diverse Secondary Metabolism Dependent on a Broad Spectrum Sfp-Type Phosphopantetheinyl Transferase
Legionella shows a diverse secondary metabolism dependent on a broad spectrum Sfp-type phosphopantetheinyl transferase Nicholas J. Tobias1, Tilman Ahrendt1, Ursula Schell2, Melissa Miltenberger1, Hubert Hilbi2,3 and Helge B. Bode1,4 1 Fachbereich Biowissenschaften, Merck Stiftungsprofessur fu¨r Molekulare Biotechnologie, Goethe Universita¨t, Frankfurt am Main, Germany 2 Max von Pettenkofer Institute, Ludwig-Maximilians-Universita¨tMu¨nchen, Munich, Germany 3 Institute of Medical Microbiology, University of Zu¨rich, Zu¨rich, Switzerland 4 Buchmann Institute for Molecular Life Sciences, Goethe Universita¨t, Frankfurt am Main, Germany ABSTRACT Several members of the genus Legionella cause Legionnaires’ disease, a potentially debilitating form of pneumonia. Studies frequently focus on the abundant number of virulence factors present in this genus. However, what is often overlooked is the role of secondary metabolites from Legionella. Following whole genome sequencing, we assembled and annotated the Legionella parisiensis DSM 19216 genome. Together with 14 other members of the Legionella, we performed comparative genomics and analysed the secondary metabolite potential of each strain. We found that Legionella contains a huge variety of biosynthetic gene clusters (BGCs) that are potentially making a significant number of novel natural products with undefined function. Surprisingly, only a single Sfp-like phosphopantetheinyl transferase is found in all Legionella strains analyzed that might be responsible for the activation of all carrier proteins in primary (fatty acid biosynthesis) and secondary metabolism (polyketide and non-ribosomal peptide synthesis). Using conserved active site motifs, we predict Submitted 29 June 2016 some novel compounds that are probably involved in cell-cell communication, Accepted 25 October 2016 Published 24 November 2016 differing to known communication systems. -
Table S5. the Information of the Bacteria Annotated in the Soil Community at Species Level
Table S5. The information of the bacteria annotated in the soil community at species level No. Phylum Class Order Family Genus Species The number of contigs Abundance(%) 1 Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus 1749 5.145782459 2 Bacteroidetes Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sedentarius 1538 4.52499338 3 Gemmatimonadetes Gemmatimonadetes Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonesis 1020 3.000970902 4 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas indica 797 2.344876284 5 Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus piscium 542 1.594633558 6 Actinobacteria Thermoleophilia Solirubrobacterales Conexibacteraceae Conexibacter Conexibacter woesei 471 1.385742446 7 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas taxi 430 1.265115184 8 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas wittichii 388 1.141545794 9 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. FARSPH 298 0.876754244 10 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sorangium cellulosum 260 0.764953367 11 Proteobacteria Deltaproteobacteria Myxococcales Polyangiaceae Sorangium Sphingomonas sp. Cra20 260 0.764953367 12 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas panacis 252 0.741416341 -
Project Number Organisms Bacteria/Virus/Archaea Date
Project_ Accession Organisms Bacteria/Virus/Archaea Date Sanger SOLiD 454_PE 454_SG PGM Illumina Status Number number P01 Bacteria Rickettsia conorii str.Malish 7 2001 Sanger AE006914 Published P02 Bacteria Tropheryma whipplei str.Twist 2003 Sanger AE014184 Published P03 Bacteria Rickettsia felis URRWXCal2 2005 Sanger CP000053 Published P04 Bacteria Rickettsia bellii RML369-C 2006 Sanger CP000087 Published P05 Bacteria Coxiella burnetii CB109 2007 Sanger SOLiD 454_PE AKYP00000000 Published P06 Bacteria Minibacterium massiliensis 2007 Sanger CP000269 Published P07 Bacteria Rickettsia massiliae MTU5 2007 Sanger CP000683 Published P08 Bacteria BaBL=Bête à Bernard Lascola 2007 Illumina In progress P09 Bacteria Acinetobacter baumannii AYE 2006 Sanger CU459141 Published P10 Bacteria Acinetobacter baumannii SDF 2006 Sanger CU468230 Published P11 Bacteria Borrelia duttonii Ly 2008 Sanger CP000976 Published P12 Bacteria Borrelia recurrentis A1 2008 Sanger CP000993 Published P13 Bacteria Francisella tularensis URFT1 2008 454_PE ABAZ00000000Published P14 Bacteria Borrelia crocidurae str. Achema 2009 454_PE PRJNA162335 Published P15 Bacteria Citrobacter koseri 2009 SOLiD 454_PE 454_SG In progress P16 Bacteria Diplorickettsia massiliensis 20B 2009 454_PE PRJNA86907 Published P17 Bacteria Enterobacter aerogenes EA1509E 2009 Sanger FO203355 Published P18 Bacteria Actinomyces grossensis 2012 SOLiD 454_PE 454_SG CAGY00000000Published P19 Bacteria Bacillus massiliosenegalensis 2012 SOLiD 454_PE 454_SG CAHJ00000000 Published P20 Bacteria Brevibacterium senegalensis -
EVALUATION of the P45 MOBILE INTEGRATIVE ELEMENT and ITS ROLE IN
EVALUATION OF THE p45 MOBILE INTEGRATIVE ELEMENT AND ITS ROLE IN Legionella pneumophila VIRULENCE A Dissertation by LANETTE M. CHRISTENSEN Submitted to the Office of Graduate and Professional Studies of Texas A&M University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Chair of Committee, Jeffrey D. Cirillo Committee Members, James Samuel Jon Skare Farida Sohrabji Head of Program, Warren Zimmer May 2018 Major Subject: Medical Sciences Copyright 2018 Lanette Christensen ABSTRACT Legionella pneumophila are aqueous environmental bacilli that live within protozoal species and cause a potentially fatal form of pneumonia called Legionnaires’ disease. Not all L. pneumophila strains have the same capacity to cause disease in humans. The majority of strains that cause clinically relevant Legionnaires’ disease harbor the p45 mobile integrative genomic element. Contribution of the p45 element to L. pneumophila virulence and ability to withstand environmental stress were addressed in this study. The L. pneumophila Philadelphia-1 (Phil-1) mobile integrative element, p45, was transferred into the attenuated strain Lp01 via conjugation, designating p45 an integrative conjugative element (ICE). The resulting trans-conjugate, Lp01+p45, was compared with strains Phil-1 and Lp01 to assess p45 in virulence using a guinea pig model infected via aerosol. The p45 element partially recovered the loss of virulence in Lp01 compared to that of Phil-1 evident in morbidity, mortality, and bacterial burden in the lungs at the time of death. This phenotype was accompanied by enhanced expression of type II interferon in the lungs and spleens 48 hours after infection, independent of bacterial burden. -
Immunoproteomic Identification of Biomarkers for Diagnosis of Legionellosis
Immunoproteomic identification of biomarkers for diagnosis of legionellosis Submitted in total fulfilment of the requirements for the degree of Doctor of philosophy by Kaylass Poorun Department of Chemistry and Biotechnology Faculty of Science, Engineering and Technology Swinburne University of Technology Australia 2014 Abstract Abstract Legionellosis, a disease with significant mortality and morbidity rates, is considered to be the second most frequent cause of severe community-acquired pneumonia. It is difficult to distinguish from other types of pneumonia due to similar clinical manifestations. Several studies have demonstrated the inadequacies of current diagnostic tests for confirming Legionella infections. This study was aimed at identifying biomarkers that can be used in an improved test. A comparative proteomic analysis, using DIGE, was carried out between L. pneumophila ATCC33152 and L. longbeachae NSW150 and D4968 isolates. While many homologous proteins were found to be commonly expressed, numerous others were identified to be differentially expressed under similar in vitro conditions suggesting that the two species have different lifestyles and infection strategies. The bacterial immunoglobulin domain containing protein, found to share sequence homology to Type V secretion proteins intimin and invasin, is not known to be present in Legionella. Human sera containing antibodies against Legionella from a set of blind samples were identified by ELISA. Downstream analyses revealed that diverse immunogens may be responsible for eliciting immune response in different Legionella species which in turn show little to no congeneric cross-reactivity. To the best of our knowledge, this is a unique finding not previously reported. Several serological diagnostic tests currently in use do not include many Legionella species in their testing panel, which may be a reason for many Legionella species being under-reported. -
Bacterial Species Exclusively Identified in Male Subjects
Supplementary Table 1: Bacterial species exclusively identified in male subjects Acholeplasma ales Clostridium magnum Lactobacillus ruminis Pseudomonas collierea Acholeplasma cavigenitalium Clostridium malenominatum Lactobacillus salivarius Pseudomonas jinjuensis Acholeplasma equifetale Clostridium nitrophenolicum Lactobacillus versmoldensis Pseudomonas luteola Acholeplasma granularum Clostridium paraputrificum Lactococcus lactis Pseudomonas panipatensis Acholeplasma hippikon Clostridium perfringens Legionella fallonii Pseudomonas poae Acidaminobacter hydrogenoformans Clostridium proteolyticum Legionella taurinensis Pseudomonas tropicalis Acidaminococcus intestini Clostridium proteolyticus Legionella worsleiensis Pseudonocardia acaciae Clostridium Acidiphilium acidophilum saccharoperbutylacetonicum Lentzea californiensis Pseudonocardia asaccharolytica Pseudonocardia Acidiphilium organovorum Clostridium sulfidigenes Leptotrichia buccalis hydrocarbonoxydans Acidiphilium symbioticum Clostridium termitidis Leptotrichia shahii Pseudoxanthomonas mexicana Acidisoma tundrae Clostridium tetani Leptotrichia wadei Pullulanibacillus naganoensis Acidovorax facilis Clostridium thermoalcaliphilum Leucobacter albus Rhizobium mesoamericanum Acinetobacter indicus Clostridium tunisiense Lewinella marina Rhodanobacter thiooxydans Acinetobacter venetianus Cohnella fontinalis Luteimonas aquatica Rhodobacter blasticus Actinoallomurus luridus Cohnella laeviribosi Luteimonas mephitis Rhodobacter gluconicum Actinobacillus pleuropneumoniae Collinsella stercoris -
Comparative Analyses of Legionella Species Identifies Genetic Features
Gomez-Valero et al. Genome Biology 2014, 15:505 http://genomebiology.com/2014/15/11/505 RESEARCH Open Access Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires’ disease Laura Gomez-Valero1,2*, Christophe Rusniok1,2, Monica Rolando1,2, Mario Neou1,2, Delphine Dervins-Ravault1,2, Jasmin Demirtas1,2, Zoe Rouy9, Robert J Moore10, Honglei Chen10, Nicola K Petty3, Sophie Jarraud4,5, Jerome Etienne4,5, Michael Steinert6, Klaus Heuner7, Simonetta Gribaldo8, Claudine Médigue9, Gernot Glöckner11, Elizabeth L Hartland12 and Carmen Buchrieser1* Abstract Background: The genus Legionella comprises over 60 species. However, L. pneumophila and L. longbeachae alone cause over 95% of Legionnaires’ disease. To identify the genetic bases underlying the different capacities to cause disease we sequenced and compared the genomes of L. micdadei, L. hackeliae and L. fallonii (LLAP10), which are all rarely isolated from humans. Results: We show that these Legionella species possess different virulence capacities in amoeba and macrophages, correlating with their occurrence in humans. Our comparative analysis of 11 Legionella genomes belonging to five species reveals highly heterogeneous genome content with over 60% representing species-specific genes; these comprise a complete prophage in L. micdadei, the first ever identified in a Legionella genome. Mobile elements are abundant in Legionella genomes; many encode type IV secretion systems for conjugative transfer, pointing to their importance for adaptation of the genus. The Dot/Icm secretion system is conserved, although the core set of substrates is small, as only 24 out of over 300 described Dot/Icm effector genes are present in all Legionella species. We also identified new eukaryotic motifs including thaumatin, synaptobrevin or clathrin/coatomer adaptine like domains. -
Comparative Analyses of Legionella Species
Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires’ disease Laura Gomez-Valero, Christophe Rusniok, Monica Rolando, Mario Neou, Delphine Dervins-Ravault, Jasmin Demirtas, Zoe Rouy, Robert J. Moore, Honglei Chen, Nicola K. Petty, et al. To cite this version: Laura Gomez-Valero, Christophe Rusniok, Monica Rolando, Mario Neou, Delphine Dervins-Ravault, et al.. Comparative analyses of Legionella species identifies genetic features of strains causing Legion- naires’ disease. Genome Biology, BioMed Central, 2014, 15 (11), pp.505. 10.1186/s13059-014-0505-0. hal-01329875 HAL Id: hal-01329875 https://hal.archives-ouvertes.fr/hal-01329875 Submitted on 17 Jun 2016 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution - NonCommercial| 4.0 International License Gomez-Valero et al. Genome Biology 2014, 15:505 http://genomebiology.com/2014/15/11/505 RESEARCH Open Access Comparative analyses of Legionella species identifies genetic features of strains causing Legionnaires’ disease Laura Gomez-Valero1,2*, Christophe Rusniok1,2, Monica Rolando1,2, Mario Neou1,2, Delphine Dervins-Ravault1,2, Jasmin Demirtas1,2, Zoe Rouy9, Robert J Moore10, Honglei Chen10, Nicola K Petty3, Sophie Jarraud4,5, Jerome Etienne4,5, Michael Steinert6, Klaus Heuner7, Simonetta Gribaldo8, Claudine Médigue9, Gernot Glöckner11, Elizabeth L Hartland12 and Carmen Buchrieser1* Abstract Background: The genus Legionella comprises over 60 species. -
Patent ( 10 ) Patent No
US010363308B2 (12 ) United States Patent ( 10 ) Patent No. : US 10 , 363, 308 B2 Clube et al. ( 45 ) Date of Patent: * Jul. 30 , 2019 ( 54 ) SELECTIVELY ALTERING MICROBIOTA (58 ) Field of Classification Search FOR IMMUNE MODULATION CPC . .. A61K 39 /3955 ; A61K 39 /0011 ; A61K 31/ 7105 ; A61K 2039 /505 ; A61P 37 /00 ; A61P 35 /00 ; A61N 1 /360002 (71 ) Applicant: SNIPR Technologies Limited , London See application file for complete search history . (GB ) ( 56 ) References Cited (72 ) Inventors : Jasper Clube , London (GB ); Morten U . S . PATENT DOCUMENTS Sommer , Copenhagen Ø ( DK ) ; 4 ,626 , 504 A 12 / 1986 Puhler et al. Christian Grøndahl, Copenhagen Ø 5 ,633 , 154 A 5 / 1997 Schaefer et al. 8 , 241, 498 B2 8 / 2012 Summer et al . ( DK ) 8 , 252 , 576 B2 8 / 2012 Campbell et al. 8 , 906 ,682 B2 12 /2014 June et al. ( 73 ) Assignee : SNIPR Technologies Limited , London 8 , 911 , 993 B2 12 / 2014 June et al . 8 ,916 ,381 B1 12 /2014 June et al . (GB ) 8 ,975 ,071 B1 3 /2015 June et al . 9 , 101, 584 B2 8 / 2015 June et al . 9 , 102 ,760 B2 8 / 2015 June et al . ( * ) Notice : Subject to any disclaimer, the term of this 9 , 102 ,761 B2 8 / 2015 June et al. patent is extended or adjusted under 35 9 , 113 ,616 B2 8 / 2015 MacDonald et al. U . S . C . 154 ( b ) by 0 days. 9 , 328 , 156 B2 5 / 2016 June et al . 9 ,464 , 140 B2 10 /2016 June et al . 9 ,481 , 728 B2 11/ 2016 June et al. -
ATCC® Food & Water Testing Reference Strains Guide
ATCC® FOOD & WatER TESTING REFERENCE STRAINS GUIDE THE ESSENTIALS OF LIFE SCIENCE RESEARCH GLOBALLY DELIVERED™ We’ve taken cryopreservation to the next level of “cool” CoolCell® LX Container The CoolCell® LX container is the definitive cryopreservation tool, providing: • Ample sample space to create working stocks • Durable, alcohol-free construction • Dependable freezing rate An easy-to-use device designed to support cell, viral, bacterial, protozoan, and fungal cultures using a slow freezing rate of -1˚C per minute in a standard -80˚C freezer. Trust the leader in cryopreservation techniques, with over 85 years of experience, and order your CoolCell® LX Container (ATCC® No. ACS-6000™) today! CoolCell® is a registered trademark of BioCision, LLC. ATCC® is a registered trademark of the American Type Culture Collection. Table of Contents Introduction ........................................................................................................................................................... 4 ATCC Bacteria by Genus ................................................................................................................................ 5 Featured: Cronobacter sakazakii ...................................................................................................................................... 6 Non-O157 STEC Strains Panel ........................................................................................................................8 Salmonella Panel .............................................................................................................................................12 -
ESCMID Online Lecture Library © by Author ESCMID Online Lecture Library Latex Agglutination Test
The etiological agent: Legionella pneumophila and other Legionella spp. Valeria Gaia © by author National Reference Centre for Legionella ESCMIDc/o Online Microbiology Lecture laboratory Library Ente Ospedaliero Cantonale Bellinzona - Switzerland © by author ESCMID Online Lecture Library Hystory of Legionnaires’ Disease July 21st 1976 - Philadelphia • 58th Convention of the American Legion at the Bellevue-Stratford Hotel • > 4000 World War II Veterans with families & friends • 600 persons staying at the hotel © by author • ESCMIDJuly 23nd: convention Online closed Lecture Library • Several veterans showed symptoms of pneumonia Searching for the causative agent David Fraser: CDC – Atlanta •Influenza virus? •Nickel intoxication? •Toxin? o 2603 toxicology tests o 5120 microscopy exams o 990 serological tests© by author ESCMIDEverybody seems Online to agree: Lecture it’s NOT a bacterialLibrary disease! July 22nd – August 2nd •High fever •Coughing •Breathing difficulties •Chest pains •Exposed Population =© people by authorstaying in the lobby or outside the Bellevue Stratford Hotel «Broad Street Pneumonia» •221ESCMID persons were Online infected (182+39 Lecture «Broad StreetLibrary Pneumonia» ) 34 patients died (29+5) September 1976-January 1977 Joseph McDade: aims to rule out Q-fever (Rickettsiae) •Injection of “infected” pulmonary tissue in Guinea Pigs microscopy: Cocci and small Bacilli not significant at the time •Inoculation in embryonated eggs + antibiotics to inhibit the growth of contaminating bacteria No growth Microscopy on the