NATIONAL ASSESSMENT of Harmful Algal Blooms in US Waters
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Periodic and Coordinated Gene Expression Between a Diazotroph and Its Diatom Host
The ISME Journal (2019) 13:118–131 https://doi.org/10.1038/s41396-018-0262-2 ARTICLE Periodic and coordinated gene expression between a diazotroph and its diatom host 1 1,2 1 3 4 Matthew J. Harke ● Kyle R. Frischkorn ● Sheean T. Haley ● Frank O. Aylward ● Jonathan P. Zehr ● Sonya T. Dyhrman1,2 Received: 11 April 2018 / Revised: 28 June 2018 / Accepted: 28 July 2018 / Published online: 16 August 2018 © International Society for Microbial Ecology 2018 Abstract In the surface ocean, light fuels photosynthetic carbon fixation of phytoplankton, playing a critical role in ecosystem processes including carbon export to the deep sea. In oligotrophic oceans, diatom–diazotroph associations (DDAs) play a keystone role in ecosystem function because diazotrophs can provide otherwise scarce biologically available nitrogen to the diatom host, fueling growth and subsequent carbon sequestration. Despite their importance, relatively little is known about the nature of these associations in situ. Here we used metatranscriptomic sequencing of surface samples from the North Pacific Subtropical Gyre (NPSG) to reconstruct patterns of gene expression for the diazotrophic symbiont Richelia and we – 1234567890();,: 1234567890();,: examined how these patterns were integrated with those of the diatom host over day night transitions. Richelia exhibited significant diel signals for genes related to photosynthesis, N2 fixation, and resource acquisition, among other processes. N2 fixation genes were significantly co-expressed with host nitrogen uptake and metabolism, as well as potential genes involved in carbon transport, which may underpin the exchange of nitrogen and carbon within this association. Patterns of expression suggested cell division was integrated between the host and symbiont across the diel cycle. -
Toxicity Equivalence Factors for Marine Biotoxins Associated with Bivalve Molluscs TECHNICAL PAPER
JOINT FAO/WHO Toxicity Equivalency Factors for Marine Biotoxins Associated with Bivalve Molluscs TECHNICAL PAPER Cover photograph: © FAOemergencies JOINT FAO/WHO Toxicity equivalence factors for marine biotoxins associated with bivalve molluscs TECHNICAL PAPER FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS WORLD HEALTH ORGANIZATION ROME, 2016 Recommended citation: FAO/WHO. 2016. Technical paper on Toxicity Equivalency Factors for Marine Biotoxins Associated with Bivalve Molluscs. Rome. 108 pp. The designations employed and the presentation of material in this publication do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations (FAO) or of the World Health Organization (WHO) concerning the legal status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. Dotted lines on maps represent approximate border lines for which there may not yet be full agreement. The mention of specific companies or products of manufacturers, whether or not these have been patented, does not imply that these are or have been endorsed or recommended by FAO or WHO in preference to others of a similar nature that are not mentioned. Errors and omissions excepted, the names of proprietary products are distinguished by initial capital letters. All reasonable precautions have been taken by FAO and WHO to verify the information contained in this publication. However, the published material is being distributed without warranty of any kind, either expressed or implied. The responsibility for the interpretation and use of the material lies with the reader. In no event shall FAO and WHO be liable for damages arising from its use. -
Cyanobacterial Toxins: Saxitoxins
WHO/SDE/WSH/xxxxx English only Cyanobacterial toxins: Saxitoxins Background document for development of WHO Guidelines for Drinking-water Quality and Guidelines for Safe Recreational Water Environments Version for Public Review Nov 2019 © World Health Organization 20XX Preface Information on cyanobacterial toxins, including saxitoxins, is comprehensively reviewed in a recent volume to be published by the World Health Organization, “Toxic Cyanobacteria in Water” (TCiW; Chorus & Welker, in press). This covers chemical properties of the toxins and information on the cyanobacteria producing them as well as guidance on assessing the risks of their occurrence, monitoring and management. In contrast, this background document focuses on reviewing the toxicological information available for guideline value derivation and the considerations for deriving the guideline values for saxitoxin in water. Sections 1-3 and 8 are largely summaries of respective chapters in TCiW and references to original studies can be found therein. To be written by WHO Secretariat Acknowledgements To be written by WHO Secretariat 5 Abbreviations used in text ARfD Acute Reference Dose bw body weight C Volume of drinking water assumed to be consumed daily by an adult GTX Gonyautoxin i.p. intraperitoneal i.v. intravenous LOAEL Lowest Observed Adverse Effect Level neoSTX Neosaxitoxin NOAEL No Observed Adverse Effect Level P Proportion of exposure assumed to be due to drinking water PSP Paralytic Shellfish Poisoning PST paralytic shellfish toxin STX saxitoxin STXOL saxitoxinol -
Guanidinium Toxins and Their Interactions with Voltage-Gated Sodium Ion Channels
marine drugs Review Guanidinium Toxins and Their Interactions with Voltage-Gated Sodium Ion Channels Lorena M. Durán-Riveroll 1,* and Allan D. Cembella 2 ID 1 CONACYT—Instituto de Ciencias del Mary Limnología, Universidad Nacional Autónoma de México, Mexico 04510, Mexico 2 Alfred-Wegener-Institut, Helmholtz Zentrum für Polar-und Meeresforschung, 27570 Bremerhaven, Germany; [email protected] * Correspondence: [email protected]; Tel.: +52-55-5623-0222 (ext. 44639) Received: 29 June 2017; Accepted: 27 September 2017; Published: 13 October 2017 Abstract: Guanidinium toxins, such as saxitoxin (STX), tetrodotoxin (TTX) and their analogs, are naturally occurring alkaloids with divergent evolutionary origins and biogeographical distribution, but which share the common chemical feature of guanidinium moieties. These guanidinium groups confer high biological activity with high affinity and ion flux blockage capacity for voltage-gated sodium channels (NaV). Members of the STX group, known collectively as paralytic shellfish toxins (PSTs), are produced among three genera of marine dinoflagellates and about a dozen genera of primarily freshwater or brackish water cyanobacteria. In contrast, toxins of the TTX group occur mainly in macrozoa, particularly among puffer fish, several species of marine invertebrates and a few terrestrial amphibians. In the case of TTX and analogs, most evidence suggests that symbiotic bacteria are the origin of the toxins, although endogenous biosynthesis independent from bacteria has not been excluded. The evolutionary origin of the biosynthetic genes for STX and analogs in dinoflagellates and cyanobacteria remains elusive. These highly potent molecules have been the subject of intensive research since the latter half of the past century; first to study the mode of action of their toxigenicity, and later as tools to characterize the role and structure of NaV channels, and finally as therapeutics. -
Control of Phytoplankton Growth in Nutrient Recycling Ecosystems
MARINE ECOLOGY PROGRESS SERIES Published May 29 Mar. Ecol. Prog. Ser. Control of phytoplankton growth in nutrient recycling ecosystems. Theory and terminology T. Frede ~hingstadl,Egil sakshaug2 ' Department of Microbiology and Plant Physiology, University of Bergen, Jahnebk. 5,N-5007 Bergen, Norway Trondhjem Biological Station, The Museum. University of Trondheim, Bynesvn. 46, N-7018 Trondheim, Norway ABSTRACT: Some of the principles governing phytoplankton growth, biomass, and species composi- tion in 2-layered pelagic ecosystems are explored using an idealized, steady-state, mathematical model, based on simple extensions of Lotka-Volterra type equations. In particular, the properties of a food web based on 'small' and 'large' phytoplankton are investigated. Features of the phytoplankton community that may be derived from this conceptually simple model include CO-existenceof more than one species on one limiting nutrient, a rapid growth rate for a large fraction of the phytoplankton community in oligotrophic waters, a long food chain starting from a population of small phytoplankton in waters with moderate mixing over the nutricline, and a transition to dominance of a food chain based on large phytoplankton when mixing is increased. As pointed out by other authors, careless use of the concept of one limiting factor may be potentially confusing in such systems. To avoid this, a distinction in terminology between 'controlling' and 'limiting' factors is suggested. INTRODUCTION dominance of short food chains in upwelling areas (Ryther 1969). Various aspects of nutrient cycling in pelagic ecosys- Many authors have addressed various aspects of the tems are of prime importance to our understanding of planktonic ecosystem using mathematical models how productivity of the oceans is controlled, and to our which are idealized and conceptual. -
Development and Validation of a Novel Approach for the Analysis of Marine Biotoxins
DEVELOPMENT AND VALIDATION OF A NOVEL APPROACH FOR THE ANALYSIS OF MARINE BIOTOXINS Bing Cheng Chai College of Engineering and Science Victoria University Submitted in fulfilment of the requirements of the degree of Doctor of Philosophy June 2017 ABSTRACT Harmful algal blooms (HABs) which can produce a variety of marine biotoxins are a prevalent and growing risk to public safety. The aim of this research was to investigate, evaluate, develop and validate an analytical method for the detection and quantitation of five important groups of marine biotoxins in shellfish tissue. These groups included paralytic shellfish toxins (PST), amnesic shellfish toxins (AST), diarrheic shellfish toxins (DST), azaspiracids (AZA) and neurotoxic shellfish toxins (NST). A novel tandem liquid chromatographic (LC) approach using hydrophilic interaction chromatography (HILIC), aqueous normal phase (ANP), reversed phase (RP) chromatography, tandem mass spectrometry (MSMS) and fluorescence spectroscopic detection (FLD) was designed and tested. During method development of the tandem LC setup, it was found that HILIC and ANP columns were unsuitable for the PSTs because of the lack of chromatographic separation power, precluding them from being used with MSMS detection. In addition, sensitivity for the PSTs at regulatory limits could not be achieved with MSMS detection, which led to a RP-FLD combination. The technique of RP-MSMS was found to be suitable for the remaining four groups of biotoxins. The final method was a combination of two RP columns coupled with FLD and MSMS detectors, with a valve switching program and injection program. A novel sample preparation method was also developed for the extraction and clean-up of biotoxins from mussels. -
Paralytic Shellfish Poisoning Toxins: Biochemistry and Origin
Aqua-BioScience Monographs Vol. 3, No. 1, pp. 1–38 (2010) www.terrapub.co.jp/onlinemonographs/absm/ Paralytic Shellfish Poisoning Toxins: Biochemistry and Origin Masaaki Kodama Laboratory of Marine Biochemistry, Department of Aquatic Biosciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo 1-1-1 Yayoi, Bunkyo, Tokyo 113-8657, Japan e-mail: [email protected] Abstract Plankton feeders such as bivalves often become toxic. Human consumption of the toxic bivalve Received on September 8, 2009 causes severe food poisoning, including paralytic shellfish poisoning (PSP) which is the most Accepted on October 13, 2009 dangerous because of the acuteness of the symptoms, high fatality and wide distribution throughout Published online on the world. Accumulation of PSP toxins in shellfish has posed serious problems to public health April 9, 2010 and fisheries industry. The causative organisms of PSP toxins are known to be species of dinoflagellates including those belonging to the genus Alexandrium, Gymnodinium catenatum Keywords and Pyrodinium bahamense var. compressum. Bivalves accumulate PSP toxins during a bloom • paralytic shellfish poisoning toxins of these dinoflagellates. Thus, the dinoflagellate toxins have been considered as being concen- • saxitoxin trated in bivalves through food web transfer. However, field studies on the toxin level of bivalves • gonyautoxin in association with the abundance of toxic dinoflagellates could not support the idea. A kinetics • tetrodotoxin study on toxins by feeding experiments of cultured dinoflagellate cells to bivalves also showed • dinoflagellate similar results, indicating that toxin accumulation of bivalves is not caused by simple accumula- • Alexandrium tamarense tion of toxins due to food-web transfer. -
A Genomic Journey Through a Genus of Large DNA Viruses
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Virology Papers Virology, Nebraska Center for 2013 Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses Adrien Jeanniard Aix-Marseille Université David D. Dunigan University of Nebraska-Lincoln, [email protected] James Gurnon University of Nebraska-Lincoln, [email protected] Irina V. Agarkova University of Nebraska-Lincoln, [email protected] Ming Kang University of Nebraska-Lincoln, [email protected] See next page for additional authors Follow this and additional works at: https://digitalcommons.unl.edu/virologypub Part of the Biological Phenomena, Cell Phenomena, and Immunity Commons, Cell and Developmental Biology Commons, Genetics and Genomics Commons, Infectious Disease Commons, Medical Immunology Commons, Medical Pathology Commons, and the Virology Commons Jeanniard, Adrien; Dunigan, David D.; Gurnon, James; Agarkova, Irina V.; Kang, Ming; Vitek, Jason; Duncan, Garry; McClung, O William; Larsen, Megan; Claverie, Jean-Michel; Van Etten, James L.; and Blanc, Guillaume, "Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses" (2013). Virology Papers. 245. https://digitalcommons.unl.edu/virologypub/245 This Article is brought to you for free and open access by the Virology, Nebraska Center for at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Virology Papers by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Authors Adrien Jeanniard, David D. Dunigan, James Gurnon, Irina V. Agarkova, Ming Kang, Jason Vitek, Garry Duncan, O William McClung, Megan Larsen, Jean-Michel Claverie, James L. Van Etten, and Guillaume Blanc This article is available at DigitalCommons@University of Nebraska - Lincoln: https://digitalcommons.unl.edu/ virologypub/245 Jeanniard, Dunigan, Gurnon, Agarkova, Kang, Vitek, Duncan, McClung, Larsen, Claverie, Van Etten & Blanc in BMC Genomics (2013) 14. -
Harmful Algal Blooms (Habs) and Desalination: a Guide to Impacts, Monitoring and Management; IOC. Manuals and Guides; Vol.:78; 2
Manuals and Guides 78 Harmful Algal Blooms (HABs) and Desalination: A Guide to Impacts, Monitoring, and Management Edited by: Donald M. Anderson, Siobhan F.E. Boerlage, Mike B. Dixon UNESCO Manuals and Guides 78 Intergovernmental Oceanographic Commission Harmful Algal Blooms (HABs) and Desalination: A Guide to Impacts, Monitoring and Management Edited by: Donald M. Anderson* Biology Department, Woods Hole Oceanographic Institution Woods Hole, MA 02543 USA Siobhan F. E. Boerlage Boerlage Consulting Gold Coast, Queensland, Australia Mike B. Dixon MDD Consulting, Kensington Calgary, Alberta, Canada *Corresponding Author’s email: [email protected] UNESCO 2017 Removal of algal toxins and taste and odor compounds 10 REMOVAL OF ALGAL TOXINS AND TASTE AND ODOR COMPOUNDS DURING DESALINATION Mike B. Dixon1, Siobhan F.E. Boerlage2, Holly Churman3, Lisa Henthorne3, and Donald M. Anderson4 1 MDD Consulting, Kensington, Calgary, Alberta, Canada 2 Boerlage Consulting, Gold Coast, Queensland, Australia 3Water Standard, Houston, Texas, USA 4Woods Hole Oceanographic Institution,Woods Hole MA USA 10.1 Introduction ......................................................................................................................................... 315 10.2 Chlorination ......................................................................................................................................... 316 10.3 Dissolved air flotation (DAF) ............................................................................................................ -
Host-Microbe Relations: a Phylogenomics-Driven Bioinformatic Approach to the Characterization of Microbial DNA from Heterogeneous Sequence Data
Host-Microbe Relations: A Phylogenomics-Driven Bioinformatic Approach to the Characterization of Microbial DNA from Heterogeneous Sequence Data Timothy Patrick Driscoll Dissertation submitted to the faculty of the Virginia Polytechnic Institute and State University in partial fulfillment of the requirements for the degree of Doctor of Philosophy In Genetics, Bioinformatics, and Computational Biology Joseph J Gillespie David R Bevan Madhav V Marathe T M Murali May 1st, 2013 Blacksburg, Virginia Keywords: phylogenomics, genome-mining, host-microbe interactions, genomics, bioinformatics, symbiosis, bacteria, lateral gene transfer Copyright 2013 Host-Microbe Relations: A Phylogenomics-Driven Bioinformatic Approach to the Characterization of Microbial DNA from Heterogeneous Sequence Data Timothy Patrick Driscoll ABSTRACT Plants and animals are characterized by intimate, enduring, often indispensable, and always complex associations with microbes. Therefore, it should come as no surprise that when the genome of a eukaryote is sequenced, a medley of bacterial sequences are produced as well. These sequences can be highly informative about the interactions between the eukaryote and its bacterial cohorts; unfortunately, they often comprise a vanishingly small constituent within a heterogeneous mixture of microbial and host sequences. Genomic analyses typically avoid the bacterial sequences in order to obtain a genome sequence for the host. Metagenomic analysis typically avoid the host sequences in order to analyze community composition and functional diversity of the bacterial component. This dissertation describes the development of a novel approach at the intersection of genomics and metagenomics, aimed at the extraction and characterization of bacterial sequences from heterogeneous sequence data using phylogenomic and bioinformatic tools. To achieve this objective, three interoperable workflows were constructed as modular computational pipelines, with built-in checkpoints for periodic interpretation and refinement. -
Full-Length Transcriptome of Thalassiosira Weissflogii As
marine drugs Communication Full-Length Transcriptome of Thalassiosira weissflogii as a Reference Resource and Mining of Chitin-Related Genes Haomiao Cheng 1,2,3, Chris Bowler 4, Xiaohui Xing 5,6,7, Vincent Bulone 5,6,7, Zhanru Shao 1,2,* and Delin Duan 1,2,8,* 1 CAS and Shandong Province Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China; [email protected] 2 Laboratory for Marine Biology and Biotechnology, Pilot Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China 3 University of Chinese Academy of Sciences, Beijing 100049, China 4 Institut de Biologie de l’ENS (IBENS), Département de Biologie, École Normale Supérieure, CNRS, INSERM, Université PSL, 75005 Paris, France; [email protected] 5 Division of Glycoscience, Department of Chemistry, School of Engineering Sciences in Chemistry, Biotechnology and Health, Royal Institute of Technology (KTH), AlbaNova University Centre, 10691 Stockholm, Sweden; [email protected] (X.X.); [email protected] (V.B.) 6 Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae 5064, Australia 7 Adelaide Glycomics, School of Agriculture Food and Wine, University of Adelaide, Waite Campus, Urrbrae 5064, Australia 8 State Key Laboratory of Bioactive Seaweed Substances, Qingdao Bright Moon Seaweed Group Co., Ltd., Qingdao 266400, China * Correspondence: [email protected] (Z.S.); [email protected] (D.D.) Citation: Cheng, H.; Bowler, C.; Xing, X.; Bulone, V.; Shao, Z.; Duan, D. Abstract: β-Chitin produced by diatoms is expected to have significant economic and ecological Full-Length Transcriptome of value due to its structure, which consists of parallel chains of chitin, its properties and the high Thalassiosira weissflogii as a Reference abundance of diatoms. -
Cyanobacterial Toxins: Saxitoxins
WHO/HEP/ECH/WSH/2020.8 Cyanobacterial toxins: saxitoxins Background document for development of WHO Guidelines for Drinking-water Quality and Guidelines for Safe Recreational Water Environments WHO/HEP/ECH/WSH/2020.8 © World Health Organization 2020 Some rights reserved. This work is available under the Creative Commons Attribution- NonCommercial-ShareAlike 3.0 IGO licence (CC BY-NC-SA 3.0 IGO; https://creativecommons.org/ licenses/by-nc-sa/3.0/igo). Under the terms of this licence, you may copy, redistribute and adapt the work for non-commercial purposes, provided the work is appropriately cited, as indicated below. In any use of this work, there should be no suggestion that WHO endorses any specific organization, products or services. The use of the WHO logo is not permitted. If you adapt the work, then you must license your work under the same or equivalent Creative Commons licence. If you create a translation of this work, you should add the following disclaimer along with the suggested citation: “This translation was not created by the World Health Organization (WHO). WHO is not responsible for the content or accuracy of this translation. The original English edition shall be the binding and authentic edition”. Any mediation relating to disputes arising under the licence shall be conducted in accordance with the mediation rules of the World Intellectual Property Organization (http://www.wipo.int/amc/en/ mediation/rules/). Suggested citation. Cyanobacterial toxins: saxitoxins. Background document for development of WHO Guidelines for drinking-water quality and Guidelines for safe recreational water environments. Geneva: World Health Organization; 2020 (WHO/HEP/ECH/WSH/2020.8).