TAAR5) and Its Action on Brain Neurochemistry E
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bioRxiv preprint doi: https://doi.org/10.1101/2020.09.10.288951; this version posted September 11, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Coordination of two enhancers drives expression of olfactory trace amine- associated receptors Aimei Fei1,8, Wanqing Wu1,8, Longzhi Tan3,8, Cheng Tang4,8, Zhengrong Xu1, Xiaona Huo4, Hongqiang Bao1, Mark Johnson5, Griffin Hartmann5, Mustafa Talay5, Cheng Yang1, Clemens Riegler6, Kristian Joseph6, Florian Engert6, X. Sunney Xie3, Gilad Barnea5, Stephen D. Liberles7, Hui Yang4, and Qian Li1,2,* 1Center for Brain Science, Shanghai Children's Medical Center, Department of Anatomy and Physiology, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China; 2Shanghai Research Center for Brain Science and Brain-Inspired Intelligence, Shanghai 201210, China; 3Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, USA; 4Institute of Neuroscience, State Key Laboratory of Neuroscience, Key Laboratory of Primate Neurobiology, CAS Center for Excellence in Brain Science and Intelligence Technology, Shanghai Research Center for Brain Science and Brian-Inspired Intelligence, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China; 5Department of Neuroscience, Division of Biology and Medicine, Brown University, Providence, RI 02912, USA; 6Department of Molecular and Cellular Biology and Center for Brain Science, Harvard University, Cambridge, MA 02138, USA; 7Howard Hughes Medical Institute, Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; 8These authors contributed equally to this work. *Correspondence to [email protected], phone: +86-21-63846590 ext. 776985 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.09.10.288951; this version posted September 11, 2020. -
G Protein-Coupled Receptors
S.P.H. Alexander et al. The Concise Guide to PHARMACOLOGY 2015/16: G protein-coupled receptors. British Journal of Pharmacology (2015) 172, 5744–5869 THE CONCISE GUIDE TO PHARMACOLOGY 2015/16: G protein-coupled receptors Stephen PH Alexander1, Anthony P Davenport2, Eamonn Kelly3, Neil Marrion3, John A Peters4, Helen E Benson5, Elena Faccenda5, Adam J Pawson5, Joanna L Sharman5, Christopher Southan5, Jamie A Davies5 and CGTP Collaborators 1School of Biomedical Sciences, University of Nottingham Medical School, Nottingham, NG7 2UH, UK, 2Clinical Pharmacology Unit, University of Cambridge, Cambridge, CB2 0QQ, UK, 3School of Physiology and Pharmacology, University of Bristol, Bristol, BS8 1TD, UK, 4Neuroscience Division, Medical Education Institute, Ninewells Hospital and Medical School, University of Dundee, Dundee, DD1 9SY, UK, 5Centre for Integrative Physiology, University of Edinburgh, Edinburgh, EH8 9XD, UK Abstract The Concise Guide to PHARMACOLOGY 2015/16 provides concise overviews of the key properties of over 1750 human drug targets with their pharmacology, plus links to an open access knowledgebase of drug targets and their ligands (www.guidetopharmacology.org), which provides more detailed views of target and ligand properties. The full contents can be found at http://onlinelibrary.wiley.com/doi/ 10.1111/bph.13348/full. G protein-coupled receptors are one of the eight major pharmacological targets into which the Guide is divided, with the others being: ligand-gated ion channels, voltage-gated ion channels, other ion channels, nuclear hormone receptors, catalytic receptors, enzymes and transporters. These are presented with nomenclature guidance and summary information on the best available pharmacological tools, alongside key references and suggestions for further reading. -
The Involvement of Trace Amine-Associated Receptor 1 and Thyroid Hormone Transporters in Non-Classical Pathways of the Thyroid Gland Auto-Regulation
The Involvement of Trace Amine-Associated Receptor 1 and Thyroid Hormone Transporters in Non-Classical Pathways of the Thyroid Gland Auto-Regulation by Maria Qatato a Thesis submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Cell Biology Approved Dissertation Committee Prof. Dr. Klaudia Brix Jacobs University Bremen Prof. Sebastian Springer, DPhil Jacobs University Bremen Dr. Georg Homuth Ernst-Moritz-Arndt-Universität Greifswald Date of Defence: 16 January 2018 Department of Life Sciences and Chemistry Statutory Declaration Family Name, Given/First Name Qatato, Maria Matriculation number 20330110 What kind of thesis are you submitting: PhD Thesis English: Declaration of Authorship I hereby declare that the thesis submitted was created and written solely by myself without any external support. Any sources, direct or indirect, are marked as such. I am aware of the fact that the contents of the thesis in digital form may be revised with regard to usage of unauthorized aid as well as whether the whole or parts of it may be identified as plagiarism. I do agree my work to be entered into a database for it to be compared with existing sources, where it will remain in order to enable further comparisons with future theses. This does not grant any rights of reproduction and usage, however. This document was neither presented to any other examination board nor has it been published. German: Erklärung der Autorenschaft (Urheberschaft) Ich erkläre hiermit, dass die vorliegende Arbeit ohne fremde Hilfe ausschließlich von mir erstellt und geschrieben worden ist. Jedwede verwendeten Quellen, direkter oder indirekter Art, sind als solche kenntlich gemacht worden. -
TAAR5) Knockout Mice
International Journal of Molecular Sciences Article Minor Changes in Erythrocyte Osmotic Fragility in Trace Amine-Associated Receptor 5 (TAAR5) Knockout Mice Ilya S. Zhukov 1,2 , Larisa G. Kubarskaya 2,3, Inessa V. Karpova 2 , Anastasia N. Vaganova 1, Marina N. Karpenko 2 and Raul R. Gainetdinov 1,4,* 1 Institute of Translational Biomedicine, Saint Petersburg State University, 199034 Saint Petersburg, Russia; [email protected] (I.S.Z.); [email protected] (A.N.V.) 2 Institute of Experimental Medicine, 197376 Saint Petersburg, Russia; [email protected] (L.G.K.); [email protected] (I.V.K.); [email protected] (M.N.K.) 3 Institute of Toxicology of Federal Medical-Biological Agency, 192019 Saint Petersburg, Russia 4 Saint Petersburg State University Hospital, Saint Petersburg State University, 199034 Saint Petersburg, Russia * Correspondence: [email protected] Abstract: Trace amine-associated receptors (TAARs) are a group of G protein-coupled receptors that are expressed in the olfactory epithelium, central nervous system, and periphery. TAAR family generally consists of nine types of receptors (TAAR1-9), which can detect biogenic amines. During the last 5 years, the TAAR5 receptor became one of the most intriguing receptors in this subfamily. Recent studies revealed that TAAR5 is involved not only in sensing socially relevant odors but also in the regulation of dopamine and serotonin transmission, emotional regulation, and adult neurogenesis by providing significant input from the olfactory system to the limbic brain areas. Such results indicate that future antagonistic TAAR5-based therapies may have high pharmacological Citation: Zhukov, I.S.; Kubarskaya, potential in the field of neuropsychiatric disorders. -
Pattern of TAAR5 Expression in the Human Brain Based on Transcriptome Datasets Analysis
International Journal of Molecular Sciences Article Pattern of TAAR5 Expression in the Human Brain Based on Transcriptome Datasets Analysis Anastasia N. Vaganova 1 , Ramilya Z. Murtazina 1 , Taisiia S. Shemyakova 1 , Andrey D. Prjibelski 1 , Nataliia V. Katolikova 1 and Raul R. Gainetdinov 1,2,* 1 Institute of Translational Biomedicine, St. Petersburg State University, Universitetskaya nab. 7/9, 199034 St. Petersburg, Russia; [email protected] (A.N.V.); [email protected] (R.Z.M.); [email protected] (T.S.S.); [email protected] (A.D.P.); [email protected] (N.V.K.) 2 St. Petersburg University Hospital, St. Petersburg State University, Universitetskaya nab. 7/9, 199034 St. Petersburg, Russia * Correspondence: [email protected] Abstract: Trace amine-associated receptors (TAAR) recognize organic compounds, including primary, secondary, and tertiary amines. The TAAR5 receptor is known to be involved in the olfactory sensing of innate socially relevant odors encoded by volatile amines. However, emerging data point to the involvement of TAAR5 in brain functions, particularly in the emotional behaviors mediated by the limbic system which suggests its potential contribution to the pathogenesis of neuropsychiatric diseases. TAAR5 expression was explored in datasets available in the Gene Expression Omnibus, Allen Brain Atlas, and Human Protein Atlas databases. Transcriptomic data demonstrate ubiquitous low TAAR5 expression in the cortical and limbic brain areas, the amygdala and the hippocampus, Citation: Vaganova, A.N.; the nucleus accumbens, the thalamus, the hypothalamus, the basal ganglia, the cerebellum, the Murtazina, R.Z.; Shemyakova, T.S.; substantia nigra, and the white matter. Altered TAAR5 expression is identified in Down syndrome, Prjibelski, A.D.; Katolikova, N.V.; Gainetdinov, R.R. -
Adenylyl Cyclase 2 Selectively Regulates IL-6 Expression in Human Bronchial Smooth Muscle Cells Amy Sue Bogard University of Tennessee Health Science Center
University of Tennessee Health Science Center UTHSC Digital Commons Theses and Dissertations (ETD) College of Graduate Health Sciences 12-2013 Adenylyl Cyclase 2 Selectively Regulates IL-6 Expression in Human Bronchial Smooth Muscle Cells Amy Sue Bogard University of Tennessee Health Science Center Follow this and additional works at: https://dc.uthsc.edu/dissertations Part of the Medical Cell Biology Commons, and the Medical Molecular Biology Commons Recommended Citation Bogard, Amy Sue , "Adenylyl Cyclase 2 Selectively Regulates IL-6 Expression in Human Bronchial Smooth Muscle Cells" (2013). Theses and Dissertations (ETD). Paper 330. http://dx.doi.org/10.21007/etd.cghs.2013.0029. This Dissertation is brought to you for free and open access by the College of Graduate Health Sciences at UTHSC Digital Commons. It has been accepted for inclusion in Theses and Dissertations (ETD) by an authorized administrator of UTHSC Digital Commons. For more information, please contact [email protected]. Adenylyl Cyclase 2 Selectively Regulates IL-6 Expression in Human Bronchial Smooth Muscle Cells Document Type Dissertation Degree Name Doctor of Philosophy (PhD) Program Biomedical Sciences Track Molecular Therapeutics and Cell Signaling Research Advisor Rennolds Ostrom, Ph.D. Committee Elizabeth Fitzpatrick, Ph.D. Edwards Park, Ph.D. Steven Tavalin, Ph.D. Christopher Waters, Ph.D. DOI 10.21007/etd.cghs.2013.0029 Comments Six month embargo expired June 2014 This dissertation is available at UTHSC Digital Commons: https://dc.uthsc.edu/dissertations/330 Adenylyl Cyclase 2 Selectively Regulates IL-6 Expression in Human Bronchial Smooth Muscle Cells A Dissertation Presented for The Graduate Studies Council The University of Tennessee Health Science Center In Partial Fulfillment Of the Requirements for the Degree Doctor of Philosophy From The University of Tennessee By Amy Sue Bogard December 2013 Copyright © 2013 by Amy Sue Bogard. -
The Origin and Molecular Evolution of Two Multigene Families: G-Protein Coupled Receptors and Glycoside Hydrolase Families
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Dissertations and Theses in Biological Sciences Biological Sciences, School of Fall 9-25-2013 THE ORIGIN AND MOLECULAR EVOLUTION OF TWO MULTIGENE FAMILIES: G-PROTEIN COUPLED RECEPTORS AND GLYCOSIDE HYDROLASE FAMILIES Seong-il Eyun University of Nebraska - Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/bioscidiss Part of the Bioinformatics Commons, and the Evolution Commons Eyun, Seong-il, "THE ORIGIN AND MOLECULAR EVOLUTION OF TWO MULTIGENE FAMILIES: G-PROTEIN COUPLED RECEPTORS AND GLYCOSIDE HYDROLASE FAMILIES" (2013). Dissertations and Theses in Biological Sciences. 57. https://digitalcommons.unl.edu/bioscidiss/57 This Article is brought to you for free and open access by the Biological Sciences, School of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Dissertations and Theses in Biological Sciences by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. THE ORIGIN AND MOLECULAR EVOLUTION OF TWO MULTIGENE FAMILIES: G- PROTEIN COUPLED RECEPTORS AND GLYCOSIDE HYDROLASE FAMILIES by Seong-il Eyun A DISSERTATION Presented to the Faculty of The Graduate College at the University of Nebraska In Partial Fulfillment of Requirements For the Degree of Doctor of Philosophy Major: Biological Sciences Under the Supervision of Professor Etsuko Moriyama Lincoln, Nebraska August, 2013 THE ORIGIN AND MOLECULAR EVOLUTION OF TWO MULTIGENE FAMILIES: G- PROTEIN COUPLED RECEPTORS AND GLYCOSIDE HYDROLASE FAMILIES Seong-il Eyun, Ph.D. University of Nebraska, 2013 Advisor: Etsuko Moriyama Multigene family is a group of genes that arose from a common ancestor by gene duplication. Gene duplications are a major driving force of new function acquisition. -
Trace Amine-Associated Receptor 1 Trafficking to Cilia of Thyroid Epithelial Cells
cells Article Trace Amine-Associated Receptor 1 Trafficking to Cilia of Thyroid Epithelial Cells Maria Qatato, Vaishnavi Venugopalan † , Alaa Al-Hashimi †, Maren Rehders †, Aaron D. Valentine , Zeynep Hein, Uillred Dallto, Sebastian Springer and Klaudia Brix * Department of Life Sciences and Chemistry, Focus Area HEALTH, Jacobs University Bremen, Campus Ring 1, D-28759 Bremen, Germany; [email protected] (M.Q.); [email protected] (V.V.); [email protected] (A.A.-H.); [email protected] (M.R.); [email protected] (A.D.V.); [email protected] (Z.H.); [email protected] (U.D.); [email protected] (S.S.) * Correspondence: [email protected]; Tel.: +49-421-200-3246 † These authors contributed equally to this study. Abstract: Trace amine-associated receptor 1 (rodent Taar1/human TAAR1) is a G protein-coupled receptor that is mainly recognized for its functions in neuromodulation. Previous in vitro studies suggested that Taar1 may signal from intracellular compartments. However, we have shown Taar1 to localize apically and on ciliary extensions in rodent thyrocytes, suggesting that at least in the thyroid, Taar1 may signal from the cilia at the apical plasma membrane domain of thyrocytes in situ, where it is exposed to the content of the follicle lumen containing putative Taar1 ligands. This study was designed to explore mouse Taar1 (mTaar1) trafficking, heterologously expressed in human and rat thyroid cell lines in order to establish an in vitro system in which Taar1 signaling from the cell Citation: Qatato, M.; Venugopalan, surface can be studied in future. -
RT² Profiler PCR Array (384-Well Format) Mouse G Protein Coupled Receptors 384HT
RT² Profiler PCR Array (384-Well Format) Mouse G Protein Coupled Receptors 384HT Cat. no. 330231 PAMM-3009ZE For pathway expression analysis Format For use with the following real-time cyclers RT² Profiler PCR Array, Applied Biosystems® models 7900HT (384-well block), Format E ViiA™ 7 (384-well block); Bio-Rad CFX384™ RT² Profiler PCR Array, Roche® LightCycler® 480 (384-well block) Format G Description The Mouse G Protein Coupled Receptors 384HT RT² Profiler™ PCR Array profiles the expression of a comprehensive panel of 370 genes encoding the most important G Protein Coupled Receptors (GPCR). GPCR regulate a number of normal biological processes and play roles in the pathophysiology of many diseases upon dysregulation of their downstream signal transduction activities. As a result, they represent 30 percent of the targets for all current drug development. Developing drug screening assays requires a survey of which GPCR the chosen cell-based model system expresses, to determine not only the expression of the target GPCR, but also related GPCR to assess off-target side effects. Expression of other unrelated GPCR (even orphan receptors whose ligand are unknown) may also correlate with off-target side effects. The ligands that bind and activate the receptors on this array include neurotransmitters and neuropeptides, hormones, chemokines and cytokines, lipid signaling molecules, light-sensitive compounds, and odorants and pheromones. The normal biological processes regulated by GPCR include, but are not limited to, behavioral and mood regulation (serotonin, dopamine, GABA, glutamate, and other neurotransmitter receptors), autonomic (sympathetic and parasympathetic) nervous system transmission (blood pressure, heart rate, and digestive processes via hormone receptors), inflammation and immune system regulation (chemokine receptors, histamine receptors), vision (opsins like rhodopsin), and smell (olfactory receptors for odorants and vomeronasal receptors for pheromones). -
Single Olfactory Receptors Set Odor Detection Thresholds
ARTICLE DOI: 10.1038/s41467-018-05129-0 OPEN Single olfactory receptors set odor detection thresholds Adam Dewan1, Annika Cichy1, Jingji Zhang1, Kayla Miguel1, Paul Feinstein2, Dmitry Rinberg3 & Thomas Bozza 1 In many species, survival depends on olfaction, yet the mechanisms that underlie olfactory sensitivity are not well understood. Here we examine how a conserved subset of olfactory receptors, the trace amine-associated receptors (TAARs), determine odor detection fi 1234567890():,; thresholds of mice to amines. We nd that deleting all TAARs, or even single TAARs, results in significant odor detection deficits. This finding is not limited to TAARs, as the deletion of a canonical odorant receptor reduced behavioral sensitivity to its preferred ligand. Remarkably, behavioral threshold is set solely by the most sensitive receptor, with no contribution from other highly sensitive receptors. In addition, increasing the number of sensory neurons (and glomeruli) expressing a threshold-determining TAAR does not improve detection, indicating that sensitivity is not limited by the typical complement of sensory neurons. Our findings demonstrate that olfactory thresholds are set by the single highest affinity receptor and suggest that TAARs are evolutionarily conserved because they determine the sensitivity to a class of biologically relevant chemicals. 1 Department of Neurobiology, Northwestern University, Evanston, IL 60208, USA. 2 Department of Biological Sciences, Hunter College, CUNY, New York, NY 10065, USA. 3 NYU Neuroscience Institute, New York University Langone Medical Center, New York, NY 10016, USA. Correspondence and requests for materials should be addressed to T.B. (email: [email protected]) NATURE COMMUNICATIONS | (2018) 9:2887 | DOI: 10.1038/s41467-018-05129-0 | www.nature.com/naturecommunications 1 ARTICLE NATURE COMMUNICATIONS | DOI: 10.1038/s41467-018-05129-0 o artificial chemical detector can match the simultaneous (Fig. -
Human G Protein Coupled Receptors 384HT
RT² Profiler PCR Array (384-Well Format) Human G Protein Coupled Receptors 384HT Cat. no. 330231 PAHS-3009ZE For pathway expression analysis Format For use with the following real-time cyclers RT² Profiler PCR Array, Applied Biosystems® models 7900HT (384-well block), Format E ViiA™ 7 (384-well block); Bio-Rad CFX384™ RT² Profiler PCR Array, Roche® LightCycler® 480 (384-well block) Format G Description The Human G Protein Coupled Receptors 384HT RT² Profiler™ PCR Array profiles the expression of a comprehensive panel of 370 genes encoding the most important G Protein Coupled Receptors (GPCR). GPCR regulate a number of normal biological processes and play roles in the pathophysiology of many diseases upon dysregulation of their downstream signal transduction activities. As a result, they represent 30 percent of the targets for all current drug development. Developing drug screening assays requires a survey of which GPCR the chosen cell-based model system expresses, to determine not only the expression of the target GPCR, but also related GPCR to assess off-target side effects. Expression of other unrelated GPCR (even orphan receptors whose ligand are unknown) may also correlate with off-target side effects. The ligands that bind and activate the receptors on this array include neurotransmitters and neuropeptides, hormones, chemokines and cytokines, lipid signaling molecules, light-sensitive compounds, and odorants and pheromones. The normal biological processes regulated by GPCR include, but are not limited to, behavioral and mood regulation (serotonin, dopamine, GABA, glutamate, and other neurotransmitter receptors), autonomic (sympathetic and parasympathetic) nervous system transmission (blood pressure, heart rate, and digestive processes via hormone receptors), inflammation and immune system regulation (chemokine receptors, histamine receptors), vision (opsins like rhodopsin), and smell (olfactory receptors for odorants and vomeronasal receptors for pheromones). -
Functional Evolution of the Trace Amine Associated Receptors in Mammals and the Loss of TAAR1 in Dogs
Functional Evolution of the Trace Amine Associated Receptors in Mammals and the Loss of TAAR1 in Dogs The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Vallender, Eric J., Zhihua Xie, Susan V. Westmoreland, and Gregory M. Miller. 2010. Functional evolution of the trace amine associated receptors in mammals and the loss of TAAR1 in dogs. BMC Evolutionary Biology 10: 51. Published Version doi:10.1186/1471-2148-10-51 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:8347354 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA Vallender et al. BMC Evolutionary Biology 2010, 10:51 http://www.biomedcentral.com/1471-2148/10/51 RESEARCH ARTICLE Open Access Functional evolution of the trace amine associated receptors in mammals and the loss of TAAR1 in dogs Eric J Vallender*, Zhihua Xie, Susan V Westmoreland, Gregory M Miller Abstract Background: The trace amine associated receptor family is a diverse array of GPCRs that arose before the first vertebrates walked on land. Trace amine associated receptor 1 (TAAR1) is a wide spectrum aminergic receptor that acts as a modulator in brain monoaminergic systems. Other trace amine associated receptors appear to relate to environmental perception and show a birth-and-death pattern in mammals similar to olfactory receptors. Results: Across mammals, avians, and amphibians, the TAAR1 gene is intact and appears to be under strong purifying selection based on rates of amino acid fixation compared to neutral mutations.