Isolation and Molecular Characterization of Mycoplasma Spp

Total Page:16

File Type:pdf, Size:1020Kb

Isolation and Molecular Characterization of Mycoplasma Spp Veterinary World, EISSN: 2231-0916 RESEARCH ARTICLE Available at www.veterinaryworld.org/Vol.12/May-2019/6.pdf Open Access Isolation and molecular characterization of Mycoplasma spp. in sheep and goats in Egypt Mounier M. Abdel Halium1, Fayez A. Salib1, S. A. Marouf2 and Emil S. Abdel Massieh1 1. Department of Medicine and Infectious Diseases, Faculty of Veterinary Medicine, Cairo University, Giza, Egypt; 2. Department of Microbiology and Mycology, Faculty of Veterinary Medicine, Cairo University, Giza, Egypt. Corresponding author: Emil S. Abdel Massieh, e-mail: [email protected] Co-authors: MMAH: [email protected], FAS: [email protected], SAM: [email protected] Received: 04-12-2018, Accepted: 15-03-2019, Published online: 13-05-2019 doi: 10.14202/vetworld.2019.664-670 How to cite this article: Abdel Halium MM, Salib FA, Marouf SA, Abdel Massieh ES (2019) Isolation and molecular characterization of Mycoplasma spp. in sheep and goats in Egypt, Veterinary World, 12(5): 664-670. Abstract Background and Aim: Different species of Mycoplasma are associated with many pathological problems in small ruminants including respiratory manifestation, this problem results in significant losses, especially in African countries. This study aimed to (I) study some epidemiological aspects of Mycoplasma species infections in Egyptian sheep and goats at Giza Governorate, (II) diagnosis of Mycoplasma species affections using bacterial isolation and identification, (III) apply the polymerase chain reaction (PCR) for typing of different Mycoplasma species, and (IV) illustrate the phylogenetic tree for the isolated Mycoplasma species and other species from GenBank using the purified PCR product. Materials and Methods: A total of 335 samples were collected from sheep and goats from Giza Governorate in Egypt as 142 nasal swabs from clinically affected animals, 167 pneumonic lungs, 18 samples from tracheal bifurcation, and 8 samples by bronchial wash were cultured on pleuropneumonia-like organisms (PPLOs) media for cultivation of Mycoplasma species. PCR and sequencing and phylogenetic analysis were adopted to identify and classify the isolated Mycoplasma species. Results: A total of 24 Mycoplasma isolates were isolated on PPLO media, identified by biochemical tests, and confirmed and typed by PCR using specific primers. 10 isolates were confirmed as Mycoplasma arginini, four isolates as Mycoplasma ovipneumoniae by PCR, and 10 isolates as undifferentiated Mycoplasma species. A purified isolate of M. arginini and M. ovipneumoniae was sequenced and phylogenetic analysis was illustrated. Conclusion: M. arginini and M. ovipneumoniae are prevalent in Egyptian sheep and goats. Further studies on M. arginini are required due to its high frequency of isolation from pneumonic sheep and goats and also from animals suffer from different respiratory manifestations. Keywords: goats, Mycoplasma, polymerase chain reaction, sequencing and phylogenetic analysis, sheep. Introduction and mastitis [5]. Mycoplasma species commonly Mycoplasma belongs to a group of bacteria associated with pneumonia in small ruminants are named Mollicutes which characterized by its min- Mycoplasma ovipneumoniae, Mycoplasma arginini, ute genome size and perpetually devoid of the cell Mycoplasma capri, Mycoplasma capripneumoniae, wall [1]. Different Mycoplasma species are accompa- and Mycoplasma capricolum [6]. M. arginini is fre- nying by many diseases and problems in both mam- quently isolated with M. ovipneumoniae from cases of malian and avian species [2], sheep and goats (poor atypical pneumonia in sheep and goats [5] and other man’s cow) are economically critical in many coun- cases with lung consolidation [7]. M. arginini is also tries including Egypt as consumed for meat, wool, and isolated from other locations such as genital organs, milk production, more than 10% of meat production eyes, and ears [8]; in addition, isolation of M. arginini in Egypt is from sheep and goats [3]. from pathological cases in human [9,10] gives suspi- Mycoplasma infections leading to a great eco- cion that M. arginini may have zoonotic importance. nomic loss due to it cause high morbidity and mor- In Egypt, different Mycoplasma species have been tality rates in sheep and goats populations in African isolated including M. arginini, M. ovipneumoniae, countries including Egypt, European countries, and and Mycoplasma agalactiae [11]. India [4]. Mycoplasma causes various clinical man- The respiratory problems are considered as mul- ifestations as pneumonia, conjunctivitis, arthritis, tifactorial disease where interaction between different microbial agents such as bacteria (Pasteurella and Copyright: Abdel Halium, et al. Open Access. This article is Mycoplasma), viruses (PI3, reovirus, and adenovi- distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/ rus), and fungi and also other factors as host defense by/4.0/), which permits unrestricted use, distribution, and mechanism and environmental factors including cli- reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the matic conditions and stress of transportations lead to Creative Commons license, and indicate if changes were made. increase the incidence of those problems [12]. The Creative Commons Public Domain Dedication waiver (http:// creativecommons.org/publicdomain/zero/1.0/) applies to the data Mycoplasma is highly fastidious microorganism made available in this article, unless otherwise stated. required very precise media to develop in vitro, the Veterinary World, EISSN: 2231-0916 664 Available at www.veterinaryworld.org/Vol.12/May-2019/6.pdf low ability of Mycoplasma to form macromolecules Postmortem examination needed for their growth refers to their evolutionary Lung tissues, tracheas, and tracheal bifurcation development from other bacteria; it is highly sus- of slaughtered sheep and goats were examined to pected that many Mycoplasmas exist in nature, how- detect and record different pathological changes [15]. ever, have not been isolated due to their hard growth Epidemiological investigation in vitro on artificial media [1]. The prevalence of isolation of different Lately, the high development of polymerase Mycoplasma species in the examined sheep and goats chain reaction (PCR) technique makes the detection was recorded according to species, ages, sexes, and of different species of Mycoplasma using specific season of the year [16]. primers much simpler, till now, PCR remains the most valuable and rapid method for detecting specific spe- Bacterial isolation and identification of Mycoplasma species cies of Mycoplasma [13]. Moreover, the amplified For nasal swab from living sheep and goats with purified PCR products of many genes from differ- respiratory manifestation, sterile cotton swabs were ent strains can be sequenced, offering the chance for used to collect nasal swabs from nostrils of affected whole or partial typing of various species and strains at a more accurate level allowing molecular epidemi- sheep and goats, and they were taken on pleuro- ological studies and research. pneumonia-like organisms (PPLOs) broth placed in The molecular epidemiological analysis allows an icebox and submitted directly to the laboratory. the genotyping of different strains and has used in the Serial dilutions from nasal swab were formed and tracing, control, and prevention of some diseases; also, incubated on PPLO broth of pH 7.4-7.6 with 15% molecular typing of some strains such as M. arginini heat-inactivated swine serum, 10% fresh yeast extract, would help in strain differentiation and then know the and 0.0005 g/ml thallium acetate at 37°C for 3-7 days, suspected pathological importance of these strains [8]. then cultured on solid PPLO media by running drop This study aimed to (I) study some epidemiological technique [17]. aspects of Mycoplasma species infections in Egyptian For bronchial washes, approximately 1 cm long sheep and goats at Giza Governorate, (II) diagnosis of skin incision was done with a surgical scalpel over the Mycoplasma species affections using bacterial isola- midpoint of the trachea under local anesthesia of 2% tion and identification, (III) apply the PCR for typing lidocaine with epinephrine, a 16-gauge hypodermic of different Mycoplasma species, and (IV) illustrate needle was inserted into the tracheal lumen. A catheter the phylogenetic tree for the isolated Mycoplasma equipped with two-way lumen connect valve was then species and other species from GenBank using the inserted through the needle up to bronchial bifurca- purified PCR product. tion; approximately 20-50 ml of Hank’s balanced salt solution was injected through the catheter and then Materials and Methods immediately aspirated with syringe. The debris was Ethical approval then removed by low-speed centrifugation; and then, Animal ethical approval was obtained from the samples were cultured on PPLO broth for 3-7 days Institutional Animal Care and Use Committee, Cairo at 37°C and then cultured on solid PPLO by running University (II F 23 18). drop technique [18,19]. Animals and samples For lung tissues and tracheal bifurcations from A total of 246 sheep and 89 goats of different ages, slaughtered sheep and goats, 167 samples from pneu- sexes, and breeds suffering from respiratory manifes- monic areas and 18 samples from tracheal bifurcation tations were examined clinically and bacteriology for were aseptically
Recommended publications
  • Margaret A. Highland, DVM Washington State University
    Bacterial Pneumonia in Sheep, The Domestic – Bighorn Sheep Interface, and Research at ADRU USAHA Committee on Sheep and Goats Providence, RI October 27, 2015 PLC M. A. Highland, DVM, DACVP, PhD candidate PhD Veterinary Training Program USDA-ARS ADRU Veterinary Microbiology and Pathology Washington State University Pullman, WA DS – BHS Interface Issue Captive/penned commingling studies & anecdotal field reports associate BHS and DS contact with BHS pneumonia Removal of DS public land grazing allotments - profound economic impacts Pneumonia continues to afflict BHS herds - despite decades of research and intense management practices Anecdotal field reports also associate DG with BHS pneumonia - pack goat restrictions on public lands DS and BHS Pneumonia DS . Lambs > Adults . Etiology • Polymicrobial (bacteria +/- viruses) or Unimicrobial • Multifactorial (colostrum, air quality, environmental stressors) BHS (wild) . Reports of respiratory disease date back to the 1920’s . All age outbreaks +/- subsequent years of disease in lambs → population-limiting disease . Etiology • Long been debated • Evidence for polymicrobial (bacterial) and multifactorial • Viruses occasionally reported (no current indication for primary role) What do we know about BHS (and DS) pneumonia? Polymicrobial and Multifactorial (the presence of the bacteria in BHS alone does NOT = disease/death) Incompletely understood disease phenomenon DS and BHS pneumonia-associated bacteria Mycoplasma ovipneumoniae (M ovi) Pasteurellaceae (“Pasteurellas”) . Mannheimia haemolytica
    [Show full text]
  • Engineering the Genome of Minimal Bacteria Using CRISPR/Cas9 Tools Iason Tsarmpopoulos
    Engineering the genome of minimal bacteria using CRISPR/Cas9 tools Iason Tsarmpopoulos To cite this version: Iason Tsarmpopoulos. Engineering the genome of minimal bacteria using CRISPR/Cas9 tools. Mi- crobiology and Parasitology. Université de Bordeaux, 2017. English. NNT : 2017BORD0787. tel- 01834971 HAL Id: tel-01834971 https://tel.archives-ouvertes.fr/tel-01834971 Submitted on 11 Jul 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE PRÉSENTÉE POUR OBTENIR LE GRADE DE DOCTEUR DE L’UNIVERSITÉ DE BORDEAUX ÉCOLE DOCTORALE Science de la vie et de la Santé SPÉCIALITÉ Microbiologie and Immunologie Par Iason TSARMPOPOULOS Ingénierie de génome de bactéries minimales par des outils CRISPR/Cas9 Sous la direction de : Monsieur Pascal SIRAND-PUGNET Soutenue le jeudi 07 décembre 2017 à 14h00 Lieu : INRA, 71 avenue Edouard Bourlaux 33882 Villenave d'Ornon salle Amphithéâtre Josy et Colette Bové Membres du jury : Mme Cécile BEBEAR Université de Bordeaux et CHU de Bordeaux Président Mme Florence TARDY Anses-Laboratoire de Lyon Rapporteur M. Matthieu JULES Institut Micalis, INRA and AgroParisTech Rapporteur M. David BIKARD Institut Pasteur Examinateur M. Fabien DARFEUILLE INSERM U1212 - CNRS UMR 5320 Invité Mme Carole LARTIGUE-PRAT INRA - Université de Bordeaux Invité M.
    [Show full text]
  • The Mysterious Orphans of Mycoplasmataceae
    The mysterious orphans of Mycoplasmataceae Tatiana V. Tatarinova1,2*, Inna Lysnyansky3, Yuri V. Nikolsky4,5,6, and Alexander Bolshoy7* 1 Children’s Hospital Los Angeles, Keck School of Medicine, University of Southern California, Los Angeles, 90027, California, USA 2 Spatial Science Institute, University of Southern California, Los Angeles, 90089, California, USA 3 Mycoplasma Unit, Division of Avian and Aquatic Diseases, Kimron Veterinary Institute, POB 12, Beit Dagan, 50250, Israel 4 School of Systems Biology, George Mason University, 10900 University Blvd, MSN 5B3, Manassas, VA 20110, USA 5 Biomedical Cluster, Skolkovo Foundation, 4 Lugovaya str., Skolkovo Innovation Centre, Mozhajskij region, Moscow, 143026, Russian Federation 6 Vavilov Institute of General Genetics, Moscow, Russian Federation 7 Department of Evolutionary and Environmental Biology and Institute of Evolution, University of Haifa, Israel 1,2 [email protected] 3 [email protected] 4-6 [email protected] 7 [email protected] 1 Abstract Background: The length of a protein sequence is largely determined by its function, i.e. each functional group is associated with an optimal size. However, comparative genomics revealed that proteins’ length may be affected by additional factors. In 2002 it was shown that in bacterium Escherichia coli and the archaeon Archaeoglobus fulgidus, protein sequences with no homologs are, on average, shorter than those with homologs [1]. Most experts now agree that the length distributions are distinctly different between protein sequences with and without homologs in bacterial and archaeal genomes. In this study, we examine this postulate by a comprehensive analysis of all annotated prokaryotic genomes and focusing on certain exceptions.
    [Show full text]
  • MIB–MIP Is a Mycoplasma System That Captures and Cleaves Immunoglobulin G
    MIB–MIP is a mycoplasma system that captures and cleaves immunoglobulin G Yonathan Arfia,b,1, Laetitia Minderc,d, Carmelo Di Primoe,f,g, Aline Le Royh,i,j, Christine Ebelh,i,j, Laurent Coquetk, Stephane Claveroll, Sanjay Vasheem, Joerg Joresn,o, Alain Blancharda,b, and Pascal Sirand-Pugneta,b aINRA (Institut National de la Recherche Agronomique), UMR 1332 Biologie du Fruit et Pathologie, F-33882 Villenave d’Ornon, France; bUniversity of Bordeaux, UMR 1332 Biologie du Fruit et Pathologie, F-33882 Villenave d’Ornon, France; cInstitut Européen de Chimie et Biologie, UMS 3033, University of Bordeaux, 33607 Pessac, France; dInstitut Bergonié, SIRIC BRIO, 33076 Bordeaux, France; eINSERM U1212, ARN Regulation Naturelle et Artificielle, 33607 Pessac, France; fCNRS UMR 5320, ARN Regulation Naturelle et Artificielle, 33607 Pessac, France; gInstitut Européen de Chimie et Biologie, University of Bordeaux, 33607 Pessac, France; hInstitut de Biologie Structurale, University of Grenoble Alpes, F-38044 Grenoble, France; iCNRS, Institut de Biologie Structurale, F-38044 Grenoble, France; jCEA, Institut de Biologie Structurale, F-38044 Grenoble, France; kCNRS UMR 6270, Plateforme PISSARO, Institute for Research and Innovation in Biomedicine - Normandie Rouen, Normandie Université, F-76821 Mont-Saint-Aignan, France; lProteome Platform, Functional Genomic Center of Bordeaux, University of Bordeaux, F-33076 Bordeaux Cedex, France; mJ. Craig Venter Institute, Rockville, MD 20850; nInternational Livestock Research Institute, 00100 Nairobi, Kenya; and oInstitute of Veterinary Bacteriology, University of Bern, CH-3001 Bern, Switzerland Edited by Roy Curtiss III, University of Florida, Gainesville, FL, and approved March 30, 2016 (received for review January 12, 2016) Mycoplasmas are “minimal” bacteria able to infect humans, wildlife, introduced into naive herds (8).
    [Show full text]
  • Role of Protein Phosphorylation in Mycoplasma Pneumoniae
    Pathogenicity of a minimal organism: Role of protein phosphorylation in Mycoplasma pneumoniae Dissertation zur Erlangung des mathematisch-naturwissenschaftlichen Doktorgrades „Doctor rerum naturalium“ der Georg-August-Universität Göttingen vorgelegt von Sebastian Schmidl aus Bad Hersfeld Göttingen 2010 Mitglieder des Betreuungsausschusses: Referent: Prof. Dr. Jörg Stülke Koreferent: PD Dr. Michael Hoppert Tag der mündlichen Prüfung: 02.11.2010 “Everything should be made as simple as possible, but not simpler.” (Albert Einstein) Danksagung Zunächst möchte ich mich bei Prof. Dr. Jörg Stülke für die Ermöglichung dieser Doktorarbeit bedanken. Nicht zuletzt durch seine freundliche und engagierte Betreuung hat mir die Zeit viel Freude bereitet. Des Weiteren hat er mir alle Freiheiten zur Verwirklichung meiner eigenen Ideen gelassen, was ich sehr zu schätzen weiß. Für die Übernahme des Korreferates danke ich PD Dr. Michael Hoppert sowie Prof. Dr. Heinz Neumann, PD Dr. Boris Görke, PD Dr. Rolf Daniel und Prof. Dr. Botho Bowien für das Mitwirken im Thesis-Komitee. Der Studienstiftung des deutschen Volkes gilt ein besonderer Dank für die finanzielle Unterstützung dieser Arbeit, durch die es mir unter anderem auch möglich war, an Tagungen in fernen Ländern teilzunehmen. Prof. Dr. Michael Hecker und der Gruppe von Dr. Dörte Becher (Universität Greifswald) danke ich für die freundliche Zusammenarbeit bei der Durchführung von zahlreichen Proteomics-Experimenten. Ein ganz besonderer Dank geht dabei an Katrin Gronau, die mich in die Feinheiten der 2D-Gelelektrophorese eingeführt hat. Außerdem möchte ich mich bei Andreas Otto für die zahlreichen Proteinidentifikationen in den letzten Monaten bedanken. Nicht zu vergessen ist auch meine zweite Außenstelle an der Universität in Barcelona. Dr. Maria Lluch-Senar und Dr.
    [Show full text]
  • Examining the Risk of Disease Transmission Between Wild Dall's
    Examining the Risk of Disease Transmission between Wild Dall’s Sheep and Mountain Goats, and Introduced Domestic Sheep, Goats, and Llamas in the Northwest Territories Prepared for: The Northwest Territories Agricultural Policy Framework and Environment and Natural Resources Government of the Northwest Territories, Canada August 20, 2005 Examining the Risk of Disease Transmission between Wild Dall’s Sheep and Mountain Goats, and Introduced Domestic Sheep, Goats, and Llamas in the Northwest Territories Elena Garde 1,2 , Susan Kutz 1,3 , Helen Schwantje 4, Alasdair Veitch 5, Emily Jenkins 1,6 , Brett Elkin 7 1 Research Group for Arctic Parasitology and the Canadian Cooperative Wildlife Health Centre, Western College of Veterinary Medicine, University of Saskatchewan, 52 Campus Drive, Saskatoon, SK, S7N 5B4. 2 Associate Wildlife Veterinarian, Biodiversity Branch, Ministry of Environment, PO Box 9338, Stn Prov Govt, 2975 Jutland Road, Victoria, BC, V8W 9M1, (250) 953-4285 [email protected] 3 Associate Professor, Faculty of Veterinary Medicine, University of Calgary, 3330 Hospital Dr. NW, Calgary AB, T2N 4N1 Ph: (306) 229-6110 4 Wildlife Veterinarian, Biodiversity Branch, Ministry of Environment, PO Box 9338, Stn Prov Govt, 2975 Jutland Road, Victoria, BC, V8W 9M1, (250) 953-4285 [email protected] 5 Supervisor, Wildlife Management, Environment and Natural Resources, Sahtu Region, P.O. Box 130, Norman Wells, NT X0E 0V0, Ph: (867) 587-2786; Fax: (867) 587-2359 [email protected] 6 Wildlife Disease Specialist / Research Scientist, Canadian Wildlife Service, 115 Perimeter Rd. Saskatoon, SK S7N 0X4 (306) 975-5357, (306) 966-7246 7 Disease & Contaminants Specialist, Environment and Natural Resources, 500 – 6102 50 th Ave.
    [Show full text]
  • Genomes Published Outside of SIGS, June
    Standards in Genomic Sciences (2011) 5:154-167 DOI:10.4056/sigs.2324675 Genome sequences of Bacteria and Archaea published outside of Standards in Genomic Sciences, June – September 2011 Oranmiyan W. Nelson1 and George M. Garrity1 1Editorial Office, Standards in Genomic Sciences and Department of Microbiology, Michigan State University, East Lansing, MI, USA The purpose of this table is to provide the community with a citable record of publications of ongoing genome sequencing projects that have led to a publication in the scientific literature. While our goal is to make the list complete, there is no guarantee that we may have omitted one or more publications appearing in this time frame. Readers and authors who wish to have publications added to this subsequent versions of this list are invited to provide the bib- liometric data for such references to the SIGS editorial office. Phylum Crenarchaeota Phylum Euryarchaeota Pyrococcus yayanosii CH1, sequence accession CP002779 [1] Methanocella paludicola, sequence accession AP011532 [2] Halorhabdus tiamatea, sequence accession AFNT00000000 [3] Thermococcus sp. Strain 4557, sequence accession CP002920 [4] Phylum Chloroflexi Phylum Proteobacteria Ralstonia solanacearum strain Po82, sequence accession CP002819 (chromosome) and CP002820 (megaplasmid) [5 Desulfovibrio alaskensis G20, sequence accession CP000112 [6] Methylophaga aminisulfidivorans MPT, sequence accession AFIG00000000 [7] Acinetobacter sp. P8-3-8, sequence accession AFIE00000000 [8] Sphingomonas strain KC8, sequence accession AFMP01000000
    [Show full text]
  • A Pilot Study of the Effects of Mycoplasma Ovipneumoniae Exposure on Domestic Lamb Growth And
    bioRxiv preprint doi: https://doi.org/10.1101/459628; this version posted November 1, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Full title: 2 A pilot study of the effects of Mycoplasma ovipneumoniae exposure on domestic lamb growth and 3 performance. 4 5 Thomas E. Besser1*, Jessica Levy1, Melissa Ackerman2, Danielle Nelson1, Kezia Manlove3, Kathleen A. 6 Potter1, Jan Busboom4, Margaret Benson4 7 8 Short title: 9 Sub-clinical Mycoplasma ovipneumoniae infection 10 11 1 Department of Veterinary Microbiology and Pathology, Washington State University College of 12 Veterinary Medicine, Pullman WA, United States of America 13 2 Department of Veterinary Clinical Sciences, Washington State University College of Veterinary 14 Medicine, Pullman WA, United States of America 15 3 Department of Wildland Resources, Utah State University College of Natural Resources, Logan UT, 16 United States of America 17 4 Department of Animal Sciences, Washington State University College of Agricultural, Human, and 18 Natural Resource Sciences, Pullman WA, United States of America. 19 * Corresponding author 20 E-mail: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/459628; this version posted November 1, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license.
    [Show full text]
  • Mycoplasma Ovipneumoniae Rotter ML, Hirschl AM
    RESEARCH LETTERS Figure. Direct examination with dark-field microscopy of specimens from a patient with agammaglobulinemia who had Spiroplasma apis infection, France. A) Helical and motile bacteria in blood culture. B) Elongated and coccoid bacteria in joint fluid. C) Helical and motile bacteria in culture from joint fluid in modified SP4 broth medium. Scale bar indicates 10 µm. than honeybees. The insect stings in this patient are a likely 7. Mueller NJ, Tini GM, Weber A, Gaspert A, Husmann L, gateway of the reported infection. Bloemberg G, et al. Hepatitis from Spiroplasma sp. in an immunocompromised patient. Am J Transplant. 2015;15:2511–6. In summary, clinicians and microbiologists should be http://dx.doi.org/10.1111/ajt.13254 aware of fastidious organisms in atypical infections in im- 8. Lorenz B, Schroeder J, Reischl U. First evidence of an endogenous munocompromised patients. Our findings indicate a need Spiroplasma sp. infection in humans manifesting as unilateral for prolonged culture on specific agar on all joint fluids in cataract associated with anterior uveitis in a premature baby. Graefes Arch Clin Exp Ophthalmol. 2002;240:348–53. patients with agammaglobulinemia and targeted molecular http://dx.doi.org/10.1007/s00417-002-0453-3 methods to identify S. apis organisms. 9. Aquilino A, Masiá M, López P, Galiana AJ, Tovar J, Andrés M, et al. First human systemic infection caused by Spiroplasma. J Clin Microbiol. 2015;53:719–21. http://dx.doi.org/10.1128/JCM.02841-14 Acknowledgments We thank Anne Laurence Thomi Georgelin, who referred the Address for correspondence: Olivier Lortholary, Necker-Enfants Malades patient to the Necker-Pasteur Center for Infectious Diseases and University Hospital, 149 rue de Sevre 75743, Paris CEDEX, France; Tropical Medicine; Valérie Zeller for the management of septic email: [email protected] polyarthritis; and Philippe Lanotte and Marie-Pierre Dubrana, who participated in molecular analysis.
    [Show full text]
  • Attachment 1 .PLOS ONE
    Attachment 1 .PLOS ONE CORRECTION Correction: Exposure of bighorn sheep to domestic goats colonized with Mycoplasma ovipneumoniae induces sub-lethal pneumonia Thomas E. Besser, E. Frances Cassirer, Kathleen A. Potter, William J. Foreyt Tn response to queries raised after publication, the authors, the authors’ institution (Office of Research Assurance, Washington State University) and a member of PLOS ONE’s Editorial Board have reviewed the findings in this article, and as a consequence the authors provide an update to the Competing Interests statement and clarifications regarding the results: The competing interests declaration is updated to acknowledge additional sources of fund ing received by the authors. This specific study was supported by funding competitively awarded by the Wild Sheep Foundation and by revenue from the WSU Rocky Crate Endow ment for Wild Sheep Disease Research. Additional research funding for the authors’ bighorn sheep pneumonia-related research has been received from the US Department of Agriculture (including the Animal Plant Health Inspection Service and the US Forest Service), the US Geo logic Survey, numerous chapters and affiliates of the Wild Sheep Foundation, and the WSU Fowler Emerging Infectious Diseases endowment. Regarding the pneumonia diagnosis reported in the article, the authors re-assessed the pri mary data and solicited and received a second opinion from a veterinary pathologist at Wash ington Animal Disease Diagnostic Lab (WADDL) unassociated with the original project. Following this reassessment, the authors confirmed the descriptions and diagnoses as reported in the article, but they noted that the consulted pathologist advised, “some pathologists might describe the histopathologic lesions seen in the least severely affected animal as ‘bronchiolitis’ rather than ‘pneumonia’ due to the preponderance of that lesion in that animal”.
    [Show full text]
  • ( 12 ) United States Patent
    US009956282B2 (12 ) United States Patent ( 10 ) Patent No. : US 9 ,956 , 282 B2 Cook et al. (45 ) Date of Patent: May 1 , 2018 ( 54 ) BACTERIAL COMPOSITIONS AND (58 ) Field of Classification Search METHODS OF USE THEREOF FOR None TREATMENT OF IMMUNE SYSTEM See application file for complete search history . DISORDERS ( 56 ) References Cited (71 ) Applicant : Seres Therapeutics , Inc. , Cambridge , U . S . PATENT DOCUMENTS MA (US ) 3 ,009 , 864 A 11 / 1961 Gordon - Aldterton et al . 3 , 228 , 838 A 1 / 1966 Rinfret (72 ) Inventors : David N . Cook , Brooklyn , NY (US ) ; 3 ,608 ,030 A 11/ 1971 Grant David Arthur Berry , Brookline, MA 4 ,077 , 227 A 3 / 1978 Larson 4 ,205 , 132 A 5 / 1980 Sandine (US ) ; Geoffrey von Maltzahn , Boston , 4 ,655 , 047 A 4 / 1987 Temple MA (US ) ; Matthew R . Henn , 4 ,689 ,226 A 8 / 1987 Nurmi Somerville , MA (US ) ; Han Zhang , 4 ,839 , 281 A 6 / 1989 Gorbach et al. Oakton , VA (US ); Brian Goodman , 5 , 196 , 205 A 3 / 1993 Borody 5 , 425 , 951 A 6 / 1995 Goodrich Boston , MA (US ) 5 ,436 , 002 A 7 / 1995 Payne 5 ,443 , 826 A 8 / 1995 Borody ( 73 ) Assignee : Seres Therapeutics , Inc. , Cambridge , 5 ,599 ,795 A 2 / 1997 McCann 5 . 648 , 206 A 7 / 1997 Goodrich MA (US ) 5 , 951 , 977 A 9 / 1999 Nisbet et al. 5 , 965 , 128 A 10 / 1999 Doyle et al. ( * ) Notice : Subject to any disclaimer , the term of this 6 ,589 , 771 B1 7 /2003 Marshall patent is extended or adjusted under 35 6 , 645 , 530 B1 . 11 /2003 Borody U .
    [Show full text]
  • 1 Supplementary Material a Major Clade of Prokaryotes with Ancient
    Supplementary Material A major clade of prokaryotes with ancient adaptations to life on land Fabia U. Battistuzzi and S. Blair Hedges Data assembly and phylogenetic analyses Protein data set: Amino acid sequences of 25 protein-coding genes (“proteins”) were concatenated in an alignment of 18,586 amino acid sites and 283 species. These proteins included: 15 ribosomal proteins (RPL1, 2, 3, 5, 6, 11, 13, 16; RPS2, 3, 4, 5, 7, 9, 11), four genes (RNA polymerase alpha, beta, and gamma subunits, Transcription antitermination factor NusG) from the functional category of Transcription, three proteins (Elongation factor G, Elongation factor Tu, Translation initiation factor IF2) of the Translation, Ribosomal Structure and Biogenesis functional category, one protein (DNA polymerase III, beta subunit) of the DNA Replication, Recombination and repair category, one protein (Preprotein translocase SecY) of the Cell Motility and Secretion category, and one protein (O-sialoglycoprotein endopeptidase) of the Posttranslational Modification, Protein Turnover, Chaperones category, as annotated in the Cluster of Orthologous Groups (COG) (Tatusov et al. 2001). After removal of multiple strains of the same species, GBlocks 0.91b (Castresana 2000) was applied to each protein in the concatenation to delete poorly aligned sites (i.e., sites with gaps in more than 50% of the species and conserved in less than 50% of the species) with the following parameters: minimum number of sequences for a conserved position: 110, minimum number of sequences for a flank position: 110, maximum number of contiguous non-conserved positions: 32000, allowed gap positions: with half. The signal-to-noise ratio was determined by altering the “minimum length of a block” parameter.
    [Show full text]