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Major Clades of Agaricales: a Multilocus Phylogenetic Overview
Mycologia, 98(6), 2006, pp. 982–995. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Major clades of Agaricales: a multilocus phylogenetic overview P. Brandon Matheny1 Duur K. Aanen Judd M. Curtis Laboratory of Genetics, Arboretumlaan 4, 6703 BD, Biology Department, Clark University, 950 Main Street, Wageningen, The Netherlands Worcester, Massachusetts, 01610 Matthew DeNitis Vale´rie Hofstetter 127 Harrington Way, Worcester, Massachusetts 01604 Department of Biology, Box 90338, Duke University, Durham, North Carolina 27708 Graciela M. Daniele Instituto Multidisciplinario de Biologı´a Vegetal, M. Catherine Aime CONICET-Universidad Nacional de Co´rdoba, Casilla USDA-ARS, Systematic Botany and Mycology de Correo 495, 5000 Co´rdoba, Argentina Laboratory, Room 304, Building 011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 Dennis E. Desjardin Department of Biology, San Francisco State University, Jean-Marc Moncalvo San Francisco, California 94132 Centre for Biodiversity and Conservation Biology, Royal Ontario Museum and Department of Botany, University Bradley R. Kropp of Toronto, Toronto, Ontario, M5S 2C6 Canada Department of Biology, Utah State University, Logan, Utah 84322 Zai-Wei Ge Zhu-Liang Yang Lorelei L. Norvell Kunming Institute of Botany, Chinese Academy of Pacific Northwest Mycology Service, 6720 NW Skyline Sciences, Kunming 650204, P.R. China Boulevard, Portland, Oregon 97229-1309 Jason C. Slot Andrew Parker Biology Department, Clark University, 950 Main Street, 127 Raven Way, Metaline Falls, Washington 99153- Worcester, Massachusetts, 01609 9720 Joseph F. Ammirati Else C. Vellinga University of Washington, Biology Department, Box Department of Plant and Microbial Biology, 111 355325, Seattle, Washington 98195 Koshland Hall, University of California, Berkeley, California 94720-3102 Timothy J. -
<I>Clitopilus Byssisedoides</I>
MYCOTAXON Volume 112, pp. 225–229 April–June 2010 Clitopilus byssisedoides, a new species from a hothouse in Germany Machiel Noordeloos1, Delia Co-David1 & Andreas Gminder2 [email protected] Netherlands Centre for Biodiversity Naturalis (section NHN) P.O. Box 9514, 2300 RA Leiden, The Netherlands 2Dorfstrasse 27, D-07751 Jena, Germany Abstract — Clitopilus byssisedoides is described as a new species found in a hothouse in Botanischer Garten Jena, in Jena, Germany, of unknown, possibly tropical origin. In this study, it is described, illustrated and distinguished from other pleurotoid Clitopilus species with rhodocyboid spores, particularly from other members of (Rhodocybe) sect. Claudopodes Key words — Entolomataceae, phylogeny, taxonomy Introduction Gminder (2005) described a remarkable pleurotoid species with rhodocyboid spores from a hothouse in the botanical garden in Jena, Germany. It was provisionally called “Rhodocybe byssisedoides” because of its resemblance to Entoloma byssisedum (Pers.) Donk. In a recent molecular phylogenetic study of the Entolomataceae (where this new species was included as “Rhodocybe sp.”), it has been shown that Clitopilus is nested within Rhodocybe. As a result, both genera were merged into Clitopilus sensu lato (Co-David et al. 2009). In this study, we formally describe the new species, Clitopilus byssisedoides and compare it to the other pleurotoid taxa. Material and methods The morphology was studied on dried material with standard methods, using sections mounted in either ammonia 5% or Congo red and a Leica DM1000 microscope. Microscopic structures were drawn with help of a drawing tube. 226 ... Noordeloos, Co-David & Gminder Taxonomic description Clitopilus byssisedoides Gminder, Noordel. & Co-David, sp. nov. MycoBank # 515443 Fig. -
Biodiversity of Wood-Decay Fungi in Italy
AperTO - Archivio Istituzionale Open Access dell'Università di Torino Biodiversity of wood-decay fungi in Italy This is the author's manuscript Original Citation: Availability: This version is available http://hdl.handle.net/2318/88396 since 2016-10-06T16:54:39Z Published version: DOI:10.1080/11263504.2011.633114 Terms of use: Open Access Anyone can freely access the full text of works made available as "Open Access". Works made available under a Creative Commons license can be used according to the terms and conditions of said license. Use of all other works requires consent of the right holder (author or publisher) if not exempted from copyright protection by the applicable law. (Article begins on next page) 28 September 2021 This is the author's final version of the contribution published as: A. Saitta; A. Bernicchia; S.P. Gorjón; E. Altobelli; V.M. Granito; C. Losi; D. Lunghini; O. Maggi; G. Medardi; F. Padovan; L. Pecoraro; A. Vizzini; A.M. Persiani. Biodiversity of wood-decay fungi in Italy. PLANT BIOSYSTEMS. 145(4) pp: 958-968. DOI: 10.1080/11263504.2011.633114 The publisher's version is available at: http://www.tandfonline.com/doi/abs/10.1080/11263504.2011.633114 When citing, please refer to the published version. Link to this full text: http://hdl.handle.net/2318/88396 This full text was downloaded from iris - AperTO: https://iris.unito.it/ iris - AperTO University of Turin’s Institutional Research Information System and Open Access Institutional Repository Biodiversity of wood-decay fungi in Italy A. Saitta , A. Bernicchia , S. P. Gorjón , E. -
! a Revised Generic Classification for The
A REVISED GENERIC CLASSIFICATION FOR THE RHODOCYBE-CLITOPILUS CLADE (ENTOLOMATACEAE, AGARICALES) INCLUDING THE DESCRIPTION OF A NEW GENUS, CLITOCELLA GEN. NOV. by Kerri L. Kluting A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science in Biology Middle Tennessee State University 2013 Thesis Committee: Dr. Sarah E. Bergemann, Chair Dr. Timothy J. Baroni Dr. Andrew V.Z. Brower Dr. Christopher R. Herlihy ! ACKNOWLEDGEMENTS I would like to first express my appreciation and gratitude to my major advisor, Dr. Sarah Bergemann, for inspiring me to push my limits and to think critically. This thesis would not have been possible without her guidance and generosity. Additionally, this thesis would have been impossible without the contributions of Dr. Tim Baroni. I would like to thank Dr. Baroni for providing critical feedback as an external thesis committee member and access to most of the collections used in this study, many of which are his personal collections. I want to thank all of my thesis committee members for thoughtfully reviewing my written proposal and thesis: Dr. Sarah Bergemann, thesis Chair, Dr. Tim Baroni, Dr. Andy Brower, and Dr. Chris Herlihy. I am also grateful to Dr. Katriina Bendiksen, Head Engineer, and Dr. Karl-Henrik Larsson, Curator, from the Botanical Garden and Museum at the University of Oslo (OSLO) and to Dr. Bryn Dentinger, Head of Mycology, and Dr. Elizabeth Woodgyer, Head of Collections Management Unit, at the Royal Botanical Gardens (KEW) for preparing herbarium loans of collections used in this study. I want to thank Dr. David Largent, Mr. -
A New Species of Rhodocybe from Finland
Karstenia 34:43-45, 1994 A new species of Rhodocybe from Finland MACHIEL E. NOORDELOOS and LASSE KOSONEN NOORDELOOS, M. E. & KOSONEN, L. 1994: A new species of Rhodocybe from Finland.- Karstenia 34:43-45. Helsinki. ISSN 0453-3402 Rhodocybefuscofarinacea Kosonen & Noordel., belonging to the section Rhodophana, is described as new from Finland. The differences between this and related taxa are discussed, and a key is presented to the European taxa in section Rhodophana. Key words: Agaricales, Basidiomycotina, Entolomataceae, Rhodocybe, Rhodocybe fuscofarinacea, sp. nova Machiel E. Noordeloos, Rijksherbarium, Hortus Botanicus, P.O. Box 9514, NL 2300 RA Leiden, The Netherlands Lasse Kosonen, Vahanjarventie 84, SF 37310 Tottijarvi, Finland Introduction glabrus; lamellae moderate distantes, adnatae, emarginatae, sordide albae demum sordide roseae; The genus Rhodocybe belongs to the agaric stipes fuscus, glaber, politus; adore valde farinaceo; family Entolomataceae, and can be distinguished sapore farinaceo-amaro. Sporae in cumulo roseae, from the other two genera in this family 6.0-8.0 x 4.5-5.0 !lffi, Q = 1.45-1.8, ellipsoideae (Entoloma and Clitopilus) by its minutely warted vel lacrymoideae; basidia 4-sporigera, fibulata; spores. The genus has recently been mono pileipellis cutis hyphis 2-5 !1ffi latis pigmentis graphed (Baroni 1981; Baroni & Halling 1992) parietalibus velleviter incrustatis; fibulae presentes. and is therefore relatively well-known. Habitat ad terram in horto sub Freesia. Noordeloos (1983) published a key to the Euro pean taxa and monographed Rhodocybe for the Type: Finland. EteHl-Hame: Kangasala, Ruutana (nat!. Netherlands (Noordeloos 1988). The present grid ref. 68278:3413), 13. VIII. 1988 L. Kosonen (L, paper deals with a Rhodocybe species collected holotype; TUR, H, isotypes). -
The Macrofungi Checklist of Liguria (Italy): the Current Status of Surveys
Posted November 2008. Summary published in MYCOTAXON 105: 167–170. 2008. The macrofungi checklist of Liguria (Italy): the current status of surveys MIRCA ZOTTI1*, ALFREDO VIZZINI 2, MIDO TRAVERSO3, FABRIZIO BOCCARDO4, MARIO PAVARINO1 & MAURO GIORGIO MARIOTTI1 *[email protected] 1DIP.TE.RIS - Università di Genova - Polo Botanico “Hanbury”, Corso Dogali 1/M, I16136 Genova, Italy 2 MUT- Università di Torino, Dipartimento di Biologia Vegetale, Viale Mattioli 25, I10125 Torino, Italy 3Via San Marino 111/16, I16127 Genova, Italy 4Via F. Bettini 14/11, I16162 Genova, Italy Abstract— The paper is aimed at integrating and updating the first edition of the checklist of Ligurian macrofungi. Data are related to mycological researches carried out mainly in some holm-oak woods through last three years. The new taxa collected amount to 172: 15 of them belonging to Ascomycota and 157 to Basidiomycota. It should be highlighted that 12 taxa have been recorded for the first time in Italy and many species are considered rare or infrequent. Each taxa reported consists of the following items: Latin name, author, habitat, height, and the WGS-84 Global Position System (GPS) coordinates. This work, together with the original Ligurian checklist, represents a contribution to the national checklist. Key words—mycological flora, new reports Introduction Liguria represents a very interesting region from a mycological point of view: macrofungi, directly and not directly correlated to vegetation, are frequent, abundant and quite well distributed among the species. This topic is faced and discussed in Zotti & Orsino (2001). Observations prove an high level of fungal biodiversity (sometimes called “mycodiversity”) since Liguria, though covering only about 2% of the Italian territory, shows more than 36 % of all the species recorded in Italy. -
A New Variety of Rhodocybe Popinalis (Entolomataceae, Agaricales) from Coprophilous Habitats of India
Journal on New Biological Reports 2(3): 260-263 (2013) ISSN 2319 – 1104 (Online) A new variety of Rhodocybe popinalis (Entolomataceae, Agaricales) from coprophilous habitats of India Amandeep Kaur 1* , NS Atri 2 and Munruchi Kaur 2 1 Desh Bhagat College of Education, Bardwal–Dhuri–148024, Punjab, India. 2 Department of Botany, Punjabi University, Patiala–147002, Punjab, India. (Received on: 25 November, 2013; accepted on: 16 December, 2013) ABSTRACT A large spored variant of Rhodocybe popinalis , a member of the family Entolomataceae, was discovered growing on a mixed cattle and horse dung heap from Punjab, India. In this paper, taxonomic details of the new taxon including chemical color reactions of the pileus surface, field photograph, microphotographs and line drawing of macroscopic and microscopic features are presented and its distinctive characters are discussed. Key Words: Basidiomycota, mushroom, Punjab, taxonomy. INTRODUCTION The genus Rhodocybe Maire is characterized by (Vrinda et al. 2000) and R. albovelutina (G. Stev.) small to medium sized carpophores; white, yellow– Horak (Kaur et al. 2011). A collection of Rhodocybe brown, red–brown or grey, convex, plane, or popinalis (Fr.) Singer was made from a pile of dung depressed pileus; adnexed, adnate, or decurrent and it was noted that the spores were much larger lamellae; central to rarely eccentric stipe; pink to than usual for this species. We present it as a first sordid gray spore print; hyaline to pale stramineous, record for India and a variety of R. popinalis based rough–warty–spinulose basidiospores, with the hilum on macroscopic and microscopic examination of the nodulose type; usually fertile lamellae edges and pileus cuticle a cutis, or a trichoderm. -
Omphalina Sensu Lato in North America 3: Chromosera Gen. Nov.*
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Sydowia Beihefte Jahr/Year: 1995 Band/Volume: 10 Autor(en)/Author(s): Redhead S. A., Ammirati Joseph F., Norvell L. L. Artikel/Article: Omphalina sensu lato in North America 3: Chromosera gen. nov. 155-164 ©Verlag Ferdinand Berger & Söhne Ges.m.b.H., Horn, Austria, download unter www.zobodat.at Omphalina sensu lato in North America 3: Chromosera gen. nov.* S. A. Redhead1, J. F Ammirati2 & L. L. Norvell2 Centre for Land and Biological Resources Research, Research Branch, Agriculture and Agri-Food Canada, Ottawa, Ontario, Canada, K1A 0C6 department of Botany, KB-15, University of Washington, Seattle, WA 98195, U.S.A. Redhead, S. A. , J. F. Ammirati & L. L. Norvell (1995).Omphalina sensu lato in North America 3: Chromosera gen. nov. -Beih. Sydowia X: 155-167. Omphalina cyanophylla and Mycena lilacifolia are considered to be synonymous. A new genus Chromosera is described to acccommodate C. cyanophylla. North American specimens are described. Variation in the dextrinoid reaction of the trama is discussed as is the circumscription of the genusMycena. Peculiar pigment corpuscles are illustrated. Keywords: Agaricales, amyloid, Basidiomycota, dextrinoid, Corrugaria, Hydropus, Mycena, Omphalina, taxonomy. We have repeatedly collected - and puzzled over - an enigmatic species commonly reported in modern literature under different names: Mycena lilacifolia (Peck) Smith in North America (Smith, 1947, 1949; Smith & al., 1979; Pomerleau, 1980; McKnight & McKnight, 1987) or Europe (Horak, 1985) and Omphalia cyanophylla (Fr.) Quel, or Omphalina cyanophylla (Fr.) Quel, in Europe (Favre, 1960; Kühner & Romagnesi, 1953; Kühner, 1957; Courtecuisse, 1986; Krieglsteiner & Enderle, 1987). -
<I>Hygrocybe Griseobrunnea</I>
ISSN (print) 0093-4666 © 2013. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/125.243 Volume 125, pp. 243–249 July–September 2013 Hygrocybe griseobrunnea, a new brown species from China Chao-Qun Wang 1, 2, 3, Tai-Hui Li 1, 2* & Bin Song 2 1 South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China 2 State Key Laboratory of Applied Microbiology, South China (The Ministry—Province Joint Development), Guangdong Institute of Microbiology, Guangzhou 510070, China 3 University of Chinese Academy of Sciences, Beijing 100049, China * Correspondence to: [email protected] Abstract — Hygrocybe griseobrunnea, a new species in Hygrocybe subsect. Squamulosae, is described and illustrated based on the morphological characters and molecular data. The fungus is characterized by numerous greyish brown to brown or dark brown squamules on the pileus surface, adnate to shortly decurrent lamellae, and a trichodermal pileipellis. Key words — Basidiomycetes, Hygrophoraceae, taxonomy Introduction The genus Hygrocybe (Fr.) P. Kumm. (Hygrophoraceae, Agaricales, Basidiomycota) is distributed worldwide, with ~150 accepted species (Kirk et al. 2008) and ~670 proposed names (http://www.indexfungorum.org). Hygrocybe sect. Squamulosae (Bataille) Singer is characterized by the dry fruitbody, squamulose or tomentose pileus, smooth stipe, and trichodermal pileipellis (at least in the pileus centre) (Boertmann 2010). More than 15 species in subsect. Squamulosae have been reported from different parts of the world (Singer 1986, Arnolds 1995, Borgen & Senn-Irlet 1995, Desjardin & Hemmes 1997, Young & Wood 1997, Borgen & Arnolds 2004, Cantrell & Lodge 2004, Leelavathy et al. 2006, Boertmann 2010, Ronikier & Borgen 2010, Vrinda et al. 2013). Only three species of the subsection — Hygrocybe cantharellus (Schwein.) Murrill, H. -
Molecular Phylogeny and Spore Evolution of Entolomataceae
Persoonia 23, 2009: 147–176 www.persoonia.org RESEARCH ARTICLE doi:10.3767/003158509X480944 Molecular phylogeny and spore evolution of Entolomataceae D. Co-David1, D. Langeveld1, M.E. Noordeloos1 Key words Abstract The phylogeny of the Entolomataceae was reconstructed using three loci (RPB2, LSU and mtSSU) and, in conjunction with spore morphology (using SEM and TEM), was used to address four main systematic issues: 1) the Clitopilus monophyly of the Entolomataceae; 2) inter-generic relationships within the Entolomataceae; 3) genus delimitation Entoloma of Entolomataceae; and 4) spore evolution in the Entolomataceae. Results confirm that the Entolomataceae (Ento Entolomataceae loma, Rhodocybe, Clitopilus, Richoniella and Rhodogaster) is monophyletic and that the combination of pinkish Rhodocybe spore prints and spores having bumps and/or ridges formed by an epicorium is a synapomorphy for the family. Rhodogaster The Entolomataceae is made up of two sister clades: one with Clitopilus nested within Rhodocybe and another Richoniella with Richoniella and Rhodogaster nested within Entoloma. Entoloma is best retained as one genus. The smaller spore evolution genera within Entoloma s.l. are either polyphyletic or make other genera paraphyletic. Spores of the clitopiloid type are derived from rhodocyboid spores. The ancestral spore type of the Entolomataceae was either rhodocyboid or entolomatoid. Taxonomic and nomenclatural changes are made including merging Rhodocybe into Clitopilus and transferring relevant species into Clitopilus and Entoloma. Article info Received: 21 April 2009; Accepted: 14 October 2009; Published: 19 November 2009. INTRODUCTION Monophyly of the Entolomataceae and intergeneric relationships The euagaric family Entolomataceae Kotl. & Pouzar is very The members of Entolomataceae have been classified together species-rich. -
Notes, Outline and Divergence Times of Basidiomycota
Fungal Diversity (2019) 99:105–367 https://doi.org/10.1007/s13225-019-00435-4 (0123456789().,-volV)(0123456789().,- volV) Notes, outline and divergence times of Basidiomycota 1,2,3 1,4 3 5 5 Mao-Qiang He • Rui-Lin Zhao • Kevin D. Hyde • Dominik Begerow • Martin Kemler • 6 7 8,9 10 11 Andrey Yurkov • Eric H. C. McKenzie • Olivier Raspe´ • Makoto Kakishima • Santiago Sa´nchez-Ramı´rez • 12 13 14 15 16 Else C. Vellinga • Roy Halling • Viktor Papp • Ivan V. Zmitrovich • Bart Buyck • 8,9 3 17 18 1 Damien Ertz • Nalin N. Wijayawardene • Bao-Kai Cui • Nathan Schoutteten • Xin-Zhan Liu • 19 1 1,3 1 1 1 Tai-Hui Li • Yi-Jian Yao • Xin-Yu Zhu • An-Qi Liu • Guo-Jie Li • Ming-Zhe Zhang • 1 1 20 21,22 23 Zhi-Lin Ling • Bin Cao • Vladimı´r Antonı´n • Teun Boekhout • Bianca Denise Barbosa da Silva • 18 24 25 26 27 Eske De Crop • Cony Decock • Ba´lint Dima • Arun Kumar Dutta • Jack W. Fell • 28 29 30 31 Jo´ zsef Geml • Masoomeh Ghobad-Nejhad • Admir J. Giachini • Tatiana B. Gibertoni • 32 33,34 17 35 Sergio P. Gorjo´ n • Danny Haelewaters • Shuang-Hui He • Brendan P. Hodkinson • 36 37 38 39 40,41 Egon Horak • Tamotsu Hoshino • Alfredo Justo • Young Woon Lim • Nelson Menolli Jr. • 42 43,44 45 46 47 Armin Mesˇic´ • Jean-Marc Moncalvo • Gregory M. Mueller • La´szlo´ G. Nagy • R. Henrik Nilsson • 48 48 49 2 Machiel Noordeloos • Jorinde Nuytinck • Takamichi Orihara • Cheewangkoon Ratchadawan • 50,51 52 53 Mario Rajchenberg • Alexandre G. -
Notes, Outline and Divergence Times of Basidiomycota
Fungal Diversity (2019) 99:105–367 https://doi.org/10.1007/s13225-019-00435-4 (0123456789().,-volV)(0123456789().,- volV) Notes, outline and divergence times of Basidiomycota 1,2,3 1,4 3 5 5 Mao-Qiang He • Rui-Lin Zhao • Kevin D. Hyde • Dominik Begerow • Martin Kemler • 6 7 8,9 10 11 Andrey Yurkov • Eric H. C. McKenzie • Olivier Raspe´ • Makoto Kakishima • Santiago Sa´nchez-Ramı´rez • 12 13 14 15 16 Else C. Vellinga • Roy Halling • Viktor Papp • Ivan V. Zmitrovich • Bart Buyck • 8,9 3 17 18 1 Damien Ertz • Nalin N. Wijayawardene • Bao-Kai Cui • Nathan Schoutteten • Xin-Zhan Liu • 19 1 1,3 1 1 1 Tai-Hui Li • Yi-Jian Yao • Xin-Yu Zhu • An-Qi Liu • Guo-Jie Li • Ming-Zhe Zhang • 1 1 20 21,22 23 Zhi-Lin Ling • Bin Cao • Vladimı´r Antonı´n • Teun Boekhout • Bianca Denise Barbosa da Silva • 18 24 25 26 27 Eske De Crop • Cony Decock • Ba´lint Dima • Arun Kumar Dutta • Jack W. Fell • 28 29 30 31 Jo´ zsef Geml • Masoomeh Ghobad-Nejhad • Admir J. Giachini • Tatiana B. Gibertoni • 32 33,34 17 35 Sergio P. Gorjo´ n • Danny Haelewaters • Shuang-Hui He • Brendan P. Hodkinson • 36 37 38 39 40,41 Egon Horak • Tamotsu Hoshino • Alfredo Justo • Young Woon Lim • Nelson Menolli Jr. • 42 43,44 45 46 47 Armin Mesˇic´ • Jean-Marc Moncalvo • Gregory M. Mueller • La´szlo´ G. Nagy • R. Henrik Nilsson • 48 48 49 2 Machiel Noordeloos • Jorinde Nuytinck • Takamichi Orihara • Cheewangkoon Ratchadawan • 50,51 52 53 Mario Rajchenberg • Alexandre G.