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Molecular Phylogenetic Studies in the Genus Amanita
1170 Molecular phylogenetic studies in the genus Amanita I5ichael Weiß, Zhu-Liang Yang, and Franz Oberwinkler Abstracl A group of 49 Amanita species that had been thoroughly examined morphologically and amtomically was analyzed by DNA sequence compadson to estimate natural groups and phylogenetic rclationships within the genus. Nuclear DNA sequences coding for a part of the ribosomal large subunit were determined and evaluated using neighbor-joining with bootstrap analysis, parsimony analysis, conditional clustering, and maximum likelihood methods, Sections Amanita, Caesarea, Vaginatae, Validae, Phalloideae, and Amidella were substantially confirmed as monophyletic groups, while the monophyly of section Lepidell.t remained unclear. Branching topologies between and within sections could also pafiially be derived. Stbgenera Amanita an'd Lepidella were not supported. The Mappae group was included in section Validae. Grouping hypotheses obtained by DNA analyses are discussed in relation to the distribution of morphological and anatomical chamcters in the studied species. Key words: fungi, basidiomycetes phylogeny, Agarrcales, Amanita systematics, large subunit rDNA, 28S. R6sum6 : A partir d'un groupe de 49 esp,ces d'Amanita prdalablement examinees morphologiquement et anatomiquement, les auteurs ont utilisd la comparaison des s€quences d'ADN pour ddfinir les groupes naturels et les relations phylog6ndtiques de ce genre. Les sdquences de I'ADN nucl6aire codant pour une partie de la grande sous-unit6 ribosomale ont 6t6 ddterminEes et €valu6es en utilisant l'analyse par liaison en lacet avec le voisin (neighbor-joining with bootstrap), l'analyse en parcimonie, le rcgroupement conditionnel et les m€thodes de ressemblance maximale. Les rdsultats confirment substantiellement les sections Afiarira, Caesarea, Uaqinatae, Ualidae, Phalloideae et Amidella, comme groupes monophyldtiques, alors que la monophylie de la section Lepidella demerxe obscure. -
Major Clades of Agaricales: a Multilocus Phylogenetic Overview
Mycologia, 98(6), 2006, pp. 982–995. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Major clades of Agaricales: a multilocus phylogenetic overview P. Brandon Matheny1 Duur K. Aanen Judd M. Curtis Laboratory of Genetics, Arboretumlaan 4, 6703 BD, Biology Department, Clark University, 950 Main Street, Wageningen, The Netherlands Worcester, Massachusetts, 01610 Matthew DeNitis Vale´rie Hofstetter 127 Harrington Way, Worcester, Massachusetts 01604 Department of Biology, Box 90338, Duke University, Durham, North Carolina 27708 Graciela M. Daniele Instituto Multidisciplinario de Biologı´a Vegetal, M. Catherine Aime CONICET-Universidad Nacional de Co´rdoba, Casilla USDA-ARS, Systematic Botany and Mycology de Correo 495, 5000 Co´rdoba, Argentina Laboratory, Room 304, Building 011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 Dennis E. Desjardin Department of Biology, San Francisco State University, Jean-Marc Moncalvo San Francisco, California 94132 Centre for Biodiversity and Conservation Biology, Royal Ontario Museum and Department of Botany, University Bradley R. Kropp of Toronto, Toronto, Ontario, M5S 2C6 Canada Department of Biology, Utah State University, Logan, Utah 84322 Zai-Wei Ge Zhu-Liang Yang Lorelei L. Norvell Kunming Institute of Botany, Chinese Academy of Pacific Northwest Mycology Service, 6720 NW Skyline Sciences, Kunming 650204, P.R. China Boulevard, Portland, Oregon 97229-1309 Jason C. Slot Andrew Parker Biology Department, Clark University, 950 Main Street, 127 Raven Way, Metaline Falls, Washington 99153- Worcester, Massachusetts, 01609 9720 Joseph F. Ammirati Else C. Vellinga University of Washington, Biology Department, Box Department of Plant and Microbial Biology, 111 355325, Seattle, Washington 98195 Koshland Hall, University of California, Berkeley, California 94720-3102 Timothy J. -
Supplementary Materials 1
Supplementary materials 1 Table S1 The characteristics of botanical preparations potentially containing alkenylbenzenes on the Chinese market. Botanical Pin Yin Name Form Ingredients Recommendation for daily intake (g) preparations (汉语) Plant food supplements (PFS) Si Ji Kang Mei Yang Xin Yuan -Rou Dou Kou xylooligosaccharide, isomalt, nutmeg (myristica PFS 1 Fu He Tang Pian tablet 4 tablets (1.4 g) fragrans), galangal, cinnamon, chicken gizzards (四季康美养心源-肉豆蔻复合糖片) Ai Si Meng Hui Xiang fennel seed, figs, prunes, dates, apples, St.Johns 2-4 tablets (2.8-5.6 g) PFS 2 Fu He Pian tablet Breed, jamaican ginger root (爱司盟茴香复合片) Zi Ran Mei Xiao Hui Xiaong Jiao Nang foeniculi powder, cinnamomi cortex, papaya PFS 3 capsule concentrated powder, green oat concentrated powder, 3 capsules (1.8 g) (自然美小茴香胶囊) brewer’s yeast, cabbage, monkey head mushroom An Mei Qi Hui Xiang Cao Ben Fu He Pian fennel seed, perilla seed, cassia seed, herbaceous PFS 4 tablet 1-2 tablets (1.4-2.8 g) (安美奇茴香草本复合片) complex papaya enzymes, bromelain enzymes, lactobacillus An Mei Qi Jiao Su Xian Wei Ying Yang Pian acidophilus, apple fiber, lemon plup fiber, fennel PFS 5 tablet seed, cascara sagrada, jamaican ginger root, herbal 2 tablets (2.7 g) (安美奇酵素纤维营养片) support complex (figs, prunes, dates, apples, St. Johns bread) Table S1 (continued) The characteristics of botanical preparations potentially containing alkenylbenzenes on the Chinese market. Pin Yin Name Botanical Form Ingredients Recommendation for daily intake (g) preparations (汉语) Gan Cao Pian glycyrrhiza uralensis, licorice -
MMA MASTERLIST - Sorted Alphabetically
MMA MASTERLIST - Sorted Alphabetically Sunday, December 10, 20Taxa Count: 2115 Page 1 of 26 Agaricus abruptibulbus Amanita amerimuscaria Agaricus arvensis Amanita amerirubescens nom. prov. Agaricus campestris Amanita atkinsoniana Agaricus haemorrhoidarius Amanita aureosolea nom. prov. Agaricus micromegethus Amanita battarrae Agaricus pattersonae Amanita bisporigera Agaricus placomyces Amanita brunnescens Agaricus semotus Amanita ceciliae Agaricus silvaticus Amanita cinereoconia Agaricus silvicola Amanita citrina Agaricus sp. Amanita citrina f. lavendula Agaricus subrutilescens Amanita cokeri Agaricus xanthrodermus Amanita cothurnata Agrocybe acericola Amanita crenulata Agrocybe aegerita Amanita crocea Agrocybe dura Amanita elongata Agrocybe erebia Amanita excelsa var. spissa Agrocybe firma Amanita farinosa Agrocybe pediades Amanita flavoconia Agrocybe praecox Amanita flavorubens Agrocybe sp. Amanita flavorubescens Agrocybe tabacina Amanita frostiana Albatrellus caeruleoporus Amanita fulva var. alba Albatrellus confluens Amanita fulva var. crassivolvata Albatrellus ovinus Amanita gemmata Albatrellus sp. Amanita jacksonii Alboleptonia sericella Amanita longipes Albugo candida Amanita murrilliana Aleuria aurantia Amanita onusta Aleuria rhenana Amanita pantherina, cf. Aleurodiscus amorphus Amanita phalloides Aleurodiscus oakesii Amanita porphyria Amanita abrupta Amanita praecox nom. prov. Amanita aestivalis Amanita pseudovolvata nom. prov. Amanita albocreata Amanita RET T01 Amanita amerifulva nom. prov. Amanita ristichii Amanita rubescens -
Aleurodiscus Bicornis and A. Formosanus Spp. Nov. (Basidiomycota) with Smooth Basidiospores, and Description of A
Aleurodiscus Bicornis and A. Formosanus Spp. Nov. (Basidiomycota) With Smooth Basidiospores, and Description of A. Parvisporus From NE China Sheng-Hua Wu ( [email protected] ) National Museum of Natural Science https://orcid.org/0000-0002-9873-5595 Chia-Ling Wei National Museum of Natural Science, ROC Chiung-Chih Chang Biodiversity Research Institute Research Article Keywords: China, corticioid fungi, Taiwan, taxonomy, wood-decaying fungi Posted Date: March 22nd, 2021 DOI: https://doi.org/10.21203/rs.3.rs-306327/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/18 Abstract Three species of Aleurodiscus s.l. characterized in having effused basidiomata, clamped generative hyphae and quasi-binding hyphae, sulphuric positive reaction of gloeocystidia, hyphidia, acanthophyses and smooth basidiospores, are described. They are A. bicornis sp. nov., A. formosanus sp. nov. and A. parvisporus. Aleurodiscus bicornis was found from high mountains of NW Yunnan Province of SW China, grew on branch of Picea sp. Aleurodiscus formosanus was found from high mountains of central Taiwan, grew on branch of gymnosperm. Aleurodiscus parvisporus was previously reported only once from Japan and Sichuan Province of China respectively, and is reported in this study from Jilin Province of China. Phylogenetic relationships of these three species were inferred from analyses of a combined dataset consisting of three genetic markers, viz. 28S, nuc rDNA ITS1-5.8S-ITS2 (ITS), and a portion of the translation elongation factor 1-alpha gene, TEF1. The studied three species are phylogenetically closely related with signicant support, corresponds with resemblance of their morphological features. -
Cortinarius Caperatus (Pers.) Fr., a New Record for Turkish Mycobiota
Kastamonu Üni., Orman Fakültesi Dergisi, 2015, 15 (1): 86-89 Kastamonu Univ., Journal of Forestry Faculty Cortinarius caperatus (Pers.) Fr., A New Record For Turkish Mycobiota *Ilgaz AKATA1, Şanlı KABAKTEPE2, Hasan AKGÜL3 Ankara University, Faculty of Science, Department of Biology, 06100, Tandoğan, Ankara Turkey İnönü University, Battalgazi Vocational School, TR-44210 Battalgazi, Malatya, Turkey Gaziantep University, Department of Biology, Faculty of Science and Arts, 27310 Gaziantep, Turkey *Correspending author: [email protected] Received date: 03.02.2015 Abstract In this study, Cortinarius caperatus (Pers.) Fr. belonging to the family Cortinariaceae was recorded for the first time from Turkey. A short description, ecology, distribution and photographs related to macro and micromorphologies of the species are provided and discussed briefly. Keywords: Cortinarius caperatus, mycobiota, new record, Turkey Cortinarius caperatus (Pers.) Fr., Türkiye Mikobiyotası İçin Yeni Bir Kayıt Özet Bu çalışmada, Cortinariaceae familyasına mensup Cortinarius caperatus (Pers.) Fr. Türkiye’den ilk kez kaydedilmiştir. Türün kısa deskripsiyonu, ekolojisi, yayılışı ve makro ve mikro morfolojilerine ait fotoğrafları verilmiş ve kısaca tartışılmıştır. Anahtar Kelimeler: Cortinarius caperatus, Mikobiyota, Yeni kayıt, Türkiye Introduction lamellae edges (Arora, 1986; Hansen and Cortinarius is a large and complex genus Knudsen, 1992; Orton, 1984; Uzun et al., of family Cortinariaceae within the order 2013). Agaricales, The genus contains According to the literature (Sesli and approximately 2 000 species recognised Denchev, 2008, Uzun et al, 2013; Akata et worldwide. The most common features al; 2014), 98 species in the genus Cortinarius among the members of the genus are the have so far been recorded from Turkey but presence of cortina between the pileus and there is not any record of Cortinarius the stipe and cinnamon brown to rusty brown caperatus (Pers.) Fr. -
AMATOXIN MUSHROOM POISONING in NORTH AMERICA 2015-2016 by Michael W
VOLUME 57: 4 JULY-AUGUST 2017 www.namyco.org AMATOXIN MUSHROOM POISONING IN NORTH AMERICA 2015-2016 By Michael W. Beug: Chair, NAMA Toxicology Committee Assessing the degree of amatoxin mushroom poisoning in North America is very challenging. Understanding the potential for various treatment practices is even more daunting. Although I have been studying mushroom poisoning for 45 years now, my own views on potential best treatment practices are still evolving. While my training in enzyme kinetics helps me understand the literature about amatoxin poisoning treatments, my lack of medical training limits me. Fortunately, critical comments from six different medical doctors have been incorporated in this article. All six, each concerned about different aspects in early drafts, returned me to the peer reviewed scientific literature for additional reading. There remains no known specific antidote for amatoxin poisoning. There have not been any gold standard double-blind placebo controlled studies. There never can be. When dealing with a potentially deadly poisoning (where in many non-western countries the amatoxin fatality rate exceeds 50%) treating of half of all poisoning patients with a placebo would be unethical. Using amatoxins on large animals to test new treatments (theoretically a great alternative) has ethical constraints on the experimental design that would most likely obscure the answers researchers sought. We must thus make our best judgement based on analysis of past cases. Although that number is now large enough that we can make some good assumptions, differences of interpretation will continue. Nonetheless, we may be on the cusp of reaching some agreement. Towards that end, I have contacted several Poison Centers and NAMA will be working with the Centers for Disease Control (CDC). -
Phylogenetic Classification of Trametes
TAXON 60 (6) • December 2011: 1567–1583 Justo & Hibbett • Phylogenetic classification of Trametes SYSTEMATICS AND PHYLOGENY Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset Alfredo Justo & David S. Hibbett Clark University, Biology Department, 950 Main St., Worcester, Massachusetts 01610, U.S.A. Author for correspondence: Alfredo Justo, [email protected] Abstract: The phylogeny of Trametes and related genera was studied using molecular data from ribosomal markers (nLSU, ITS) and protein-coding genes (RPB1, RPB2, TEF1-alpha) and consequences for the taxonomy and nomenclature of this group were considered. Separate datasets with rDNA data only, single datasets for each of the protein-coding genes, and a combined five-marker dataset were analyzed. Molecular analyses recover a strongly supported trametoid clade that includes most of Trametes species (including the type T. suaveolens, the T. versicolor group, and mainly tropical species such as T. maxima and T. cubensis) together with species of Lenzites and Pycnoporus and Coriolopsis polyzona. Our data confirm the positions of Trametes cervina (= Trametopsis cervina) in the phlebioid clade and of Trametes trogii (= Coriolopsis trogii) outside the trametoid clade, closely related to Coriolopsis gallica. The genus Coriolopsis, as currently defined, is polyphyletic, with the type species as part of the trametoid clade and at least two additional lineages occurring in the core polyporoid clade. In view of these results the use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenclatural combinations would be necessary, and the classification of additional species (i.e., not yet described and/or sampled for mo- lecular data) in Trametes based on morphological characters alone will still be possible. -
Mycodiversity Studies in Selected Ecosystems of Greece: 5
Uploaded — May 2011 [Link page — MYCOTAXON 115: 535] Expert reviewers: Giuseppe Venturella, Solomon P. Wasser Mycodiversity studies in selected ecosystems of Greece: 5. Basidiomycetes associated with woods dominated by Castanea sativa (Nafpactia Mts., central Greece) ELIAS POLEMIS1, DIMITRIS M. DIMOU1,3, LEONIDAS POUNTZAS4, DIMITRIS TZANOUDAKIS2 & GEORGIOS I. ZERVAKIS1* 1 [email protected], [email protected] Agricultural University of Athens, Lab. of General & Agricultural Microbiology Iera Odos 75, 11855 Athens, Greece 2 University of Patras, Dept. of Biology, Panepistimioupoli, 26500 Rion, Greece 3 Koritsas 10, 15343 Agia Paraskevi, Greece 4 Technological Educational Institute of Mesologgi, 30200 Mesologgi, Greece Abstract — Very scarce literature data are available on the macrofungi associated with sweet chestnut trees (Castanea sativa, Fagaceae). We report here the results of an inventory of basidiomycetes, which was undertaken in the region of Nafpactia Mts., central Greece. The investigated area, with woods dominated by C. sativa, was examined for the first time in respect to its mycodiversity. One hundred and four species belonging in 54 genera were recorded. Fifteen species (Conocybe pseudocrispa, Entoloma nitens, Lactarius glaucescens, Lichenomphalia velutina, Parasola schroeteri, Pholiotina coprophila, Russula alutacea, R. azurea, R. pseudoaeruginea, R. pungens, R. vitellina, Sarcodon glaucopus, Tomentella badia, T. fibrosa and Tubulicrinis sororius) are reported for the first time from Greece. In addition, 33 species constitute new habitats/hosts/substrates records. Key words — biodiversity, macromycete, Mediterranean, mushroom Introduction Castanea sativa Mill., Fagaceae (sweet chestnut) generally prefers north- facing slopes where the rainfall is greater than 600 mm, on moderately acid soils (pH 4.5–6.5) with a light texture. It covers ca. -
Fruiting Body Form, Not Nutritional Mode, Is the Major Driver of Diversification in Mushroom-Forming Fungi
Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi Marisol Sánchez-Garcíaa,b, Martin Rybergc, Faheema Kalsoom Khanc, Torda Vargad, László G. Nagyd, and David S. Hibbetta,1 aBiology Department, Clark University, Worcester, MA 01610; bUppsala Biocentre, Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, SE-75005 Uppsala, Sweden; cDepartment of Organismal Biology, Evolutionary Biology Centre, Uppsala University, 752 36 Uppsala, Sweden; and dSynthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Center, 6726 Szeged, Hungary Edited by David M. Hillis, The University of Texas at Austin, Austin, TX, and approved October 16, 2020 (received for review December 22, 2019) With ∼36,000 described species, Agaricomycetes are among the and the evolution of enclosed spore-bearing structures. It has most successful groups of Fungi. Agaricomycetes display great di- been hypothesized that the loss of ballistospory is irreversible versity in fruiting body forms and nutritional modes. Most have because it involves a complex suite of anatomical features gen- pileate-stipitate fruiting bodies (with a cap and stalk), but the erating a “surface tension catapult” (8, 11). The effect of gas- group also contains crust-like resupinate fungi, polypores, coral teroid fruiting body forms on diversification rates has been fungi, and gasteroid forms (e.g., puffballs and stinkhorns). Some assessed in Sclerodermatineae, Boletales, Phallomycetidae, and Agaricomycetes enter into ectomycorrhizal symbioses with plants, Lycoperdaceae, where it was found that lineages with this type of while others are decayers (saprotrophs) or pathogens. We constructed morphology have diversified at higher rates than nongasteroid a megaphylogeny of 8,400 species and used it to test the following lineages (12). -
Agaricus Blazei Or Royal Sun Agaric, Inonotus Obliquus Or Chaga, and Ganoderma Lucidum Or Reishi
VOLUME 56: 4 July-August 2016 www.namyco.org Spaces Still Available for NAMA 2016 SHENANDOAH FORAY! There are still slots available for NAMA’s 2016 foray this September 8-11 in Front Royal, VA. Don’t miss out on this unique foray -- sign up today!* Exciting partnership with Shenandoah National Park. We are thrilled that many of this year’s field trips will be in Shenandoah National Park, authorized under a special research permit and “Bioblitz” designation. This gives NAMA members a unique opportunity to pick mushrooms in the park and contribute to a better understanding of the park’s mycoflora. We really hope you’ll join in on this project. Fantastic Faculty. As you know, field trips are only a part of the foray: at any given point on Friday and Saturday there also will be multiple presentations and workshops running. Speakers and workshop leaders will include: • Denis Benjamin • Susan Hopkins • Gary Lincoff • Alan and Arleen Bessette • Mark Jones • Brian Looney • Walt Sturgeon • Catherine Aime • Jay Justice • Shannon Nix • Rod Tulloss • Michael Castellano • Ryan Kepler • Conrad Schoch • Debbie Viess • Tradd Cotter • Patrick Leacock • Ann and Rob Simpson • Rytas Vilgalys • Roy Halling • James Lendemer • Dorothy Smullen You can read more about the faculty, workshops and walks (and see the great foray tshirt!) on the NAMA web- site (http://namyco.org/nama_shenandoah_foray.php). *To register go to http://mms.namyco.org/members/evr/ reg_event.php?orgcode=NAMA&evid=7001739. Great Location. The foray location is just 15 minutes away from Front Royal, VA, the northern gateway to Shenan- doah National Park. -
Aleurodiscus Disciformis (DC.) Pat., Bull
Aleurodiscus disciformis (DC.) Pat., Bull. Soc. mycol. Fr. 10(2): 80 (1894) COROLOGíA Registro/Herbario Fecha Lugar Hábitat MAR 280407 36 24/08/2007 Monte de Revenga, Canicosa Bosque mixto de rebollo Leg.: José Cuesta; Nino Santamaría; de la Sierra (Burgos) (Quercus pyrenaica) y Santiago Serrano; Miguel Á. Ribes 1101 m. 30T VM9945 pino albar (Pinus Det.: Miguel Á. Ribes sylvestris) TAXONOMíA • Basiónimo: Thelephora disciformis DC., in de Candolle & Lamarck 1815 • Posición en la clasificación: Stereaceae, Russulales, Incertae sedis, Agaricomycetes, Basidiomycota, Fungi • Sinónimos: o Aleurocystidiellum disciforme (DC.) Tellería, Biblthca Mycol. 135: 25 (1990) o Aleurocystidiellum disciforme (DC.) Boidin, Terra & Lanq., Bull. trimest. Soc. mycol. Fr. 84: 63 (1968) o Helvella disciformis Vill., Hist. pl. Dauphiné 3(2): 1046 (1789) o Hymenochaete disciformis (Vill.) W.G. Sm., Syn. Brit. Basidiomyc.: 409 (1908) o Peniophora disciformis (DC.) Cooke, Grevillea 8(no. 45): 20 (1879) o Stereum disciforme (DC.) Fr., Epicr. syst. mycol. (Upsaliae): 551 (1838) DESCRIPCIÓN MACRO Carpóforo discoideo a resupinado e incluso efuso-reflejo, de 2-4 cm de ancho por aproximadamente 1 mm de espesor, que acomoda su forma a las grietas de la corteza de los árboles en los que vive, borde diferenciado no adherido al sustrato y en ocasiones bastante levantado. Himenio liso, a veces con pequeños bultos, de color blanquecino amarillento grisáceo, que se agrieta con la edad. Superficie externa cremosa-marrón, ligeramente zonada. Consistencia tenaz y suberosa. Aleurodiscus disciformis 280407 36 Página 1 de 4 DESCRIPCIÓN MICRO 1. Esporas anchamente elipsoides, ligeramente verrugosas y fuertemente amiloides Medidas esporales (400x, material fresco) 12.8 [15.8 ; 17.1] 20.1 x 8.8 [11.5 ; 12.7] 15.5 Q = 1 [1.3 ; 1.4] 1.7 ; N = 29 ; C = 95% Me = 16.43 x 12.13 ; Qe = 1.37 Aleurodiscus disciformis 280407 36 Página 2 de 4 2.