Phylogenetic Classification of Trametes
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A Survey of Fungi at the University of Wisconsin-Waukesha Field Station
University of Wisconsin Milwaukee UWM Digital Commons Field Station Bulletins UWM Field Station Spring 1993 A survey of fungi at the University of Wisconsin- Waukesha Field Station Alan D. Parker University of Wisconsin-Waukesha Follow this and additional works at: https://dc.uwm.edu/fieldstation_bulletins Part of the Forest Biology Commons, and the Zoology Commons Recommended Citation Parker, A.D. 1993 A survey of fungi at the University of Wisconsin-Waukesha Field Station. Field Station Bulletin 26(1): 1-10. This Article is brought to you for free and open access by UWM Digital Commons. It has been accepted for inclusion in Field Station Bulletins by an authorized administrator of UWM Digital Commons. For more information, please contact [email protected]. A Survey of Fungi at the University of Wisconsin-Waukesha Field Station Alan D. Parker Department of Biological Sciences University of Wisconsin-Waukesha Waukesha, Wisconsin 53188 Introduction The University of Wisconsin-Waukesha Field Station was founded in 1967 through the generous gift of a 98 acre farm by Ms. Gertrude Sherman. The facility is located approximately nine miles west of Waukesha on Highway 18, just south of the Waterville Road intersection. The site consists of rolling glacial deposits covered with old field vegetation, 20 acres of xeric oak woods, a small lake with marshlands and bog, and a cold water stream. Other communities are being estab- lished as a result of restoration work; among these are mesic prairie, oak opening, and stands of various conifers. A long-term study of higher fungi and Myxomycetes, primarily from the xeric oak woods, was started in 1978. -
Tree of Life Marula Oil in Africa
HerbalGram 79 • August – October 2008 HerbalGram 79 • August Herbs and Thyroid Disease • Rosehips for Osteoarthritis • Pelargonium for Bronchitis • Herbs of the Painted Desert The Journal of the American Botanical Council Number 79 | August – October 2008 Herbs and Thyroid Disease • Rosehips for Osteoarthritis • Pelargonium for Bronchitis • Herbs of the Painted Desert • Herbs of the Painted Bronchitis for Osteoarthritis Disease • Rosehips for • Pelargonium Thyroid Herbs and www.herbalgram.org www.herbalgram.org US/CAN $6.95 Tree of Life Marula Oil in Africa www.herbalgram.org Herb Pharm’s Botanical Education Garden PRESERVING THE FULL-SPECTRUM OF NATURE'S CHEMISTRY The Art & Science of Herbal Extraction At Herb Pharm we continue to revere and follow the centuries-old, time- proven wisdom of traditional herbal medicine, but we integrate that wisdom with the herbal sciences and technology of the 21st Century. We produce our herbal extracts in our new, FDA-audited, GMP- compliant herb processing facility which is located just two miles from our certified-organic herb farm. This assures prompt delivery of freshly-harvested herbs directly from the fields, or recently HPLC chromatograph showing dried herbs directly from the farm’s drying loft. Here we also biochemical consistency of 6 receive other organic and wildcrafted herbs from various parts of batches of St. John’s Wort extracts the USA and world. In producing our herbal extracts we use precision scientific instru- ments to analyze each herb’s many chemical compounds. However, You’ll find Herb Pharm we do not focus entirely on the herb’s so-called “active compound(s)” at fine natural products and, instead, treat each herb and its chemical compounds as an integrated whole. -
Downstream Process Development for Small Scale Purification Of
WestminsterResearch http://www.westminster.ac.uk/westminsterresearch Enhanced large-scale production of laccases from Coriolopsis polyzona for use in dye bioremediation Tingting Cui School of Life Sciences This is an electronic version of a PhD thesis awarded by the University of Westminster. © The Author, 2009. This is an exact reproduction of the paper copy held by the University of Westminster library. The WestminsterResearch online digital archive at the University of Westminster aims to make the research output of the University available to a wider audience. Copyright and Moral Rights remain with the authors and/or copyright owners. Users are permitted to download and/or print one copy for non-commercial private study or research. Further distribution and any use of material from within this archive for profit-making enterprises or for commercial gain is strictly forbidden. Whilst further distribution of specific materials from within this archive is forbidden, you may freely distribute the URL of WestminsterResearch: (http://westminsterresearch.wmin.ac.uk/). In case of abuse or copyright appearing without permission e-mail [email protected] ENHANCED LARGE-SCALE PRODUCTION OF LACCASES FROM CORIOLOPSIS POLYZONA FOR USE IN DYE BIOREMEDIATION Tingting Cui A thesis submitted to University of Westminster in fulfilment of the requirements for the degree of Doctor of Philosophy School of Biociences University of Westminster London W1W 6UW United Kingdom MAY 2009 ABSTRACT Pollution from synthetic dyes, released by textile and paper pulping plants, draws major concern. Textile effluents have negative impact both on the environment and human health because they are toxic and some are carcinogenic. Apart from the textile industry, dyes are also widely used in manufacturing industries for leather products, cosmetics, pharmaceuticals, foods and beverages. -
Diversity of Polyporales in the Malay Peninsular and the Application of Ganoderma Australe (Fr.) Pat
DIVERSITY OF POLYPORALES IN THE MALAY PENINSULAR AND THE APPLICATION OF GANODERMA AUSTRALE (FR.) PAT. IN BIOPULPING OF EMPTY FRUIT BUNCHES OF ELAEIS GUINEENSIS MOHAMAD HASNUL BIN BOLHASSAN FACULTY OF SCIENCE UNIVERSITY OF MALAYA KUALA LUMPUR 2013 DIVERSITY OF POLYPORALES IN THE MALAY PENINSULAR AND THE APPLICATION OF GANODERMA AUSTRALE (FR.) PAT. IN BIOPULPING OF EMPTY FRUIT BUNCHES OF ELAEIS GUINEENSIS MOHAMAD HASNUL BIN BOLHASSAN THESIS SUBMITTED IN FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY INSTITUTE OF BIOLOGICAL SCIENCES FACULTY OF SCIENCE UNIVERSITY OF MALAYA KUALA LUMPUR 2013 UNIVERSITI MALAYA ORIGINAL LITERARY WORK DECLARATION Name of Candidate: MOHAMAD HASNUL BIN BOLHASSAN (I.C No: 830416-13-5439) Registration/Matric No: SHC080030 Name of Degree: DOCTOR OF PHILOSOPHY Title of Project Paper/Research Report/Disertation/Thesis (“this Work”): DIVERSITY OF POLYPORALES IN THE MALAY PENINSULAR AND THE APPLICATION OF GANODERMA AUSTRALE (FR.) PAT. IN BIOPULPING OF EMPTY FRUIT BUNCHES OF ELAEIS GUINEENSIS. Field of Study: MUSHROOM DIVERSITY AND BIOTECHNOLOGY I do solemnly and sincerely declare that: 1) I am the sole author/writer of this work; 2) This Work is original; 3) Any use of any work in which copyright exists was done by way of fair dealing and for permitted purposes and any excerpt or extract from, or reference to or reproduction of any copyright work has been disclosed expressly and sufficiently and the title of the Work and its authorship have been acknowledge in this Work; 4) I do not have any actual -
Major Clades of Agaricales: a Multilocus Phylogenetic Overview
Mycologia, 98(6), 2006, pp. 982–995. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Major clades of Agaricales: a multilocus phylogenetic overview P. Brandon Matheny1 Duur K. Aanen Judd M. Curtis Laboratory of Genetics, Arboretumlaan 4, 6703 BD, Biology Department, Clark University, 950 Main Street, Wageningen, The Netherlands Worcester, Massachusetts, 01610 Matthew DeNitis Vale´rie Hofstetter 127 Harrington Way, Worcester, Massachusetts 01604 Department of Biology, Box 90338, Duke University, Durham, North Carolina 27708 Graciela M. Daniele Instituto Multidisciplinario de Biologı´a Vegetal, M. Catherine Aime CONICET-Universidad Nacional de Co´rdoba, Casilla USDA-ARS, Systematic Botany and Mycology de Correo 495, 5000 Co´rdoba, Argentina Laboratory, Room 304, Building 011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 Dennis E. Desjardin Department of Biology, San Francisco State University, Jean-Marc Moncalvo San Francisco, California 94132 Centre for Biodiversity and Conservation Biology, Royal Ontario Museum and Department of Botany, University Bradley R. Kropp of Toronto, Toronto, Ontario, M5S 2C6 Canada Department of Biology, Utah State University, Logan, Utah 84322 Zai-Wei Ge Zhu-Liang Yang Lorelei L. Norvell Kunming Institute of Botany, Chinese Academy of Pacific Northwest Mycology Service, 6720 NW Skyline Sciences, Kunming 650204, P.R. China Boulevard, Portland, Oregon 97229-1309 Jason C. Slot Andrew Parker Biology Department, Clark University, 950 Main Street, 127 Raven Way, Metaline Falls, Washington 99153- Worcester, Massachusetts, 01609 9720 Joseph F. Ammirati Else C. Vellinga University of Washington, Biology Department, Box Department of Plant and Microbial Biology, 111 355325, Seattle, Washington 98195 Koshland Hall, University of California, Berkeley, California 94720-3102 Timothy J. -
Spore Prints
SPORE PRINTS BULLETIN OF THE PUGET SOUND MYCOLOGICAL SOCIETY Number 473 June 2011 OLDEST, ODDEST FUNGI FINALLY “The big message here is that most fungi and most fungal diversity PHOTOGRAPHED Susan Milius reside in fungi that have neither been collected nor cultivated,” Science News, May 12, 2011 says John W. Taylor of the University of California, Berkeley. Exeter team member Meredith Jones spotted the hard-to-detect organisms by marking them with fluorescent tags. The trick re- vealed fungal cells attached to algal cells as if parasitizing them. M. Jones One of the big questions about early fungi is whether they might have arisen from “some kind of parasitic ancestor like Rozella,” says Rytas Vilgalys of Duke University. Interesting, yes. But loosening the definition of fungi to include organisms without chitin walls could wreak havoc in the concept of that group, objects Robert Lücking of the Field Museum in Chicago. “I would actually conclude, based on the evidence, that these are not fungi,” he says. Instead, they might be near rela- tives—an almost-fungus. Two fungal cells, possibly from an ancient lineage, each show a curvy, taillike flagellum (red) during a mobile stage in their life cycle. IS MUTATED FUNGUS KILLING AMERICAN BATS? Andy Coghlan Images of little dots, some wriggling a skinny tail, give scientists New Scientist, May 24, 2011 a first glimpse of a vast swath of the oldest, and perhaps oddest, fungal group alive today. A fungus blamed for killing more than a mil- The first views suggest that, unlike any other fungi known, these lion bats in the US since 2006 has been found might live as essentially naked cells without the rigid cell wall to differ only slightly from an apparently that supposedly defines a fungus, says Tom Richards of the Natu- harmless European version. -
Field Guide to Common Macrofungi in Eastern Forests and Their Ecosystem Functions
United States Department of Field Guide to Agriculture Common Macrofungi Forest Service in Eastern Forests Northern Research Station and Their Ecosystem General Technical Report NRS-79 Functions Michael E. Ostry Neil A. Anderson Joseph G. O’Brien Cover Photos Front: Morel, Morchella esculenta. Photo by Neil A. Anderson, University of Minnesota. Back: Bear’s Head Tooth, Hericium coralloides. Photo by Michael E. Ostry, U.S. Forest Service. The Authors MICHAEL E. OSTRY, research plant pathologist, U.S. Forest Service, Northern Research Station, St. Paul, MN NEIL A. ANDERSON, professor emeritus, University of Minnesota, Department of Plant Pathology, St. Paul, MN JOSEPH G. O’BRIEN, plant pathologist, U.S. Forest Service, Forest Health Protection, St. Paul, MN Manuscript received for publication 23 April 2010 Published by: For additional copies: U.S. FOREST SERVICE U.S. Forest Service 11 CAMPUS BLVD SUITE 200 Publications Distribution NEWTOWN SQUARE PA 19073 359 Main Road Delaware, OH 43015-8640 April 2011 Fax: (740)368-0152 Visit our homepage at: http://www.nrs.fs.fed.us/ CONTENTS Introduction: About this Guide 1 Mushroom Basics 2 Aspen-Birch Ecosystem Mycorrhizal On the ground associated with tree roots Fly Agaric Amanita muscaria 8 Destroying Angel Amanita virosa, A. verna, A. bisporigera 9 The Omnipresent Laccaria Laccaria bicolor 10 Aspen Bolete Leccinum aurantiacum, L. insigne 11 Birch Bolete Leccinum scabrum 12 Saprophytic Litter and Wood Decay On wood Oyster Mushroom Pleurotus populinus (P. ostreatus) 13 Artist’s Conk Ganoderma applanatum -
A New Species of Antrodia (Basidiomycota, Polypores) from China
Mycosphere 8(7): 878–885 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/7/4 Copyright © Guizhou Academy of Agricultural Sciences A new species of Antrodia (Basidiomycota, Polypores) from China Chen YY, Wu F* Institute of Microbiology, Beijing Forestry University, Beijing 100083, China Chen YY, Wu F 2017 –A new species of Antrodia (Basidiomycota, Polypores) from China. Mycosphere 8(7), 878–885, Doi 10.5943/mycosphere/8/7/4 Abstract A new species, Antrodia monomitica sp. nov., is described and illustrated from China based on morphological characters and molecular evidence. It is characterized by producing annual, fragile and nodulose basidiomata, a monomitic hyphal system with clamp connections on generative hyphae, hyaline, thin-walled and fusiform to mango-shaped basidiospores (6–7.5 × 2.3– 3 µm), and causing a typical brown rot. In phylogenetic analysis inferred from ITS and nLSU rDNA sequences, the new species forms a distinct lineage in the Antrodia s. l., and has a close relationship with A. oleracea. Key words – Fomitopsidaceae – phylogenetic analysis – taxonomy – wood-decaying fungi Introduction Antrodia P. Karst., typified with Polyporus serpens Fr. (=Antrodia albida (Fr.) Donk (Donk 1960, Ryvarden 1991), is characterized by a resupinate to effused-reflexed growth habit, white or pale colour of the context, a dimitic hyphal system with clamp connections on generative hyphae, hyaline, thin-walled, cylindrical to very narrow ellipsoid basidiospores which are negative in Melzer’s reagent and Cotton Blue, and causing a brown rot (Ryvarden & Melo 2014). Antrodia is a highly heterogeneous genus which is closely related to Fomitopsis P. -
The Identity of European and North American Boletopsis Spp
North American Fungi Volume 3, Number 7, Pages 5-15 Published August 29, 2008 Formerly Pacific Northwest Fungi The identity of European and North American Boletopsis spp. (Basidiomycota; Thelephorales, Boletopsidaceae) Roy Watling 1 and Jeremy Milne2 1Caledonian Mycological Enterprises, Edinburgh, EH4 3HU, Scotland, UK. 2 Royal Botanic Garden, Edinburgh, EH3 5LR, Scotland, UK Watling, R.., and J. Milne. 2008. The identity of European and North American Boletopsis spp. (Basidiomycota; Thelephorales, Boletopsidaceae). North American Fungi 3(7): 5-15. doi: 10.2509/naf2008.003.0072 Corresponding author: R. Watling, [email protected]. Accepted for publication October 4, 2007. http://pnwfungi.org Copyright © 2008 Pacific Northwest Fungi Project. All rights reserved. Abstract. The identity of Boletopsis collections from North America was compared with material from Europe using molecular techniques. Sequencing of the complete ITS region was conducted to see whether or not the European material could be correlated with that from North America as the presently accepted synonymy would suggest. It was found that the North American collections could be separated into two taxa. Boletopsis grisea, as previously reported for material from both Eastern and Western States of North America; and a second taxon, B. perplexa, a newly recognized species from the British Isles, and not European B. leucomelaena, as 6 Watling and Milne. North American Boletopsis spp. North American Fungi 3(7): 5-15 the literature would suggest. There appears to be at least four distinct species of Boletopsis in North America: B. grisea; B. perplexa recently described from native Pinus sylvestris woodlands of Scotland; B. smithii; and an undetermined taxon. -
A Phylogenetic Overview of the Antrodia Clade (Basidiomycota, Polyporales)
Mycologia, 105(6), 2013, pp. 1391–1411. DOI: 10.3852/13-051 # 2013 by The Mycological Society of America, Lawrence, KS 66044-8897 A phylogenetic overview of the antrodia clade (Basidiomycota, Polyporales) Beatriz Ortiz-Santana1 phylogenetic studies also have recognized the genera Daniel L. Lindner Amylocystis, Dacryobolus, Melanoporia, Pycnoporellus, US Forest Service, Northern Research Station, Center for Sarcoporia and Wolfiporia as part of the antrodia clade Forest Mycology Research, One Gifford Pinchot Drive, (SY Kim and Jung 2000, 2001; Binder and Hibbett Madison, Wisconsin 53726 2002; Hibbett and Binder 2002; SY Kim et al. 2003; Otto Miettinen Binder et al. 2005), while the genera Antrodia, Botanical Museum, University of Helsinki, PO Box 7, Daedalea, Fomitopsis, Laetiporus and Sparassis have 00014, Helsinki, Finland received attention in regard to species delimitation (SY Kim et al. 2001, 2003; KM Kim et al. 2005, 2007; Alfredo Justo Desjardin et al. 2004; Wang et al. 2004; Wu et al. 2004; David S. Hibbett Dai et al. 2006; Blanco-Dios et al. 2006; Chiu 2007; Clark University, Biology Department, 950 Main Street, Worcester, Massachusetts 01610 Lindner and Banik 2008; Yu et al. 2010; Banik et al. 2010, 2012; Garcia-Sandoval et al. 2011; Lindner et al. 2011; Rajchenberg et al. 2011; Zhou and Wei 2012; Abstract: Phylogenetic relationships among mem- Bernicchia et al. 2012; Spirin et al. 2012, 2013). These bers of the antrodia clade were investigated with studies also established that some of the genera are molecular data from two nuclear ribosomal DNA not monophyletic and several modifications have regions, LSU and ITS. A total of 123 species been proposed: the segregation of Antrodia s.l. -
Fruiting Body Form, Not Nutritional Mode, Is the Major Driver of Diversification in Mushroom-Forming Fungi
Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi Marisol Sánchez-Garcíaa,b, Martin Rybergc, Faheema Kalsoom Khanc, Torda Vargad, László G. Nagyd, and David S. Hibbetta,1 aBiology Department, Clark University, Worcester, MA 01610; bUppsala Biocentre, Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, SE-75005 Uppsala, Sweden; cDepartment of Organismal Biology, Evolutionary Biology Centre, Uppsala University, 752 36 Uppsala, Sweden; and dSynthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Center, 6726 Szeged, Hungary Edited by David M. Hillis, The University of Texas at Austin, Austin, TX, and approved October 16, 2020 (received for review December 22, 2019) With ∼36,000 described species, Agaricomycetes are among the and the evolution of enclosed spore-bearing structures. It has most successful groups of Fungi. Agaricomycetes display great di- been hypothesized that the loss of ballistospory is irreversible versity in fruiting body forms and nutritional modes. Most have because it involves a complex suite of anatomical features gen- pileate-stipitate fruiting bodies (with a cap and stalk), but the erating a “surface tension catapult” (8, 11). The effect of gas- group also contains crust-like resupinate fungi, polypores, coral teroid fruiting body forms on diversification rates has been fungi, and gasteroid forms (e.g., puffballs and stinkhorns). Some assessed in Sclerodermatineae, Boletales, Phallomycetidae, and Agaricomycetes enter into ectomycorrhizal symbioses with plants, Lycoperdaceae, where it was found that lineages with this type of while others are decayers (saprotrophs) or pathogens. We constructed morphology have diversified at higher rates than nongasteroid a megaphylogeny of 8,400 species and used it to test the following lineages (12). -
A Bi-Specific Lectin from the Mushroom Boletopsis Grisea and Its
www.nature.com/scientificreports OPEN A bi‑specifc lectin from the mushroom Boletopsis grisea and its application in glycoanalytical workfows Mehul B. Ganatra, Vladimir Potapov, Saulius Vainauskas, Anthony Z. Francis, Colleen M. McClung, Cristian I. Ruse, Jennifer L. Ong & Christopher H. Taron* The BLL lectin from the edible Japanese “Kurokawa” mushroom (Boletopsis leucomelaena) was previously reported to bind to N-glycans harboring terminal N-acetylglucosamine (GlcNAc) and to induce apoptosis in a leukemia cell line. However, its gene has not been reported. In this study, we used a transcriptomics‑based workfow to identify a full‑length transcript of a BLL functional ortholog (termed BGL) from Boletopsis grisea, a close North American relative of B. leucomelaena. The deduced amino acid sequence of BGL was an obvious member of fungal fruit body lectin family (Pfam PF07367), a highly conserved group of mushroom lectins with a preference for binding O‑glycans harboring the Thomsen–Friedenreich antigen (TF‑antigen; Galβ1,3GalNAc‑α‑) and having two ligand binding sites. Functional characterization of recombinant BGL using glycan microarray analysis and surface plasmon resonance confrmed its ability to bind both the TF‑antigen and β‑GlcNAc‑terminated N-glycans. Structure‑guided mutagenesis of BGL’s two ligand binding clefts showed that one site is responsible for binding TF‑antigen structures associated with O‑glycans, whereas the second site specifcally recognizes N‑glycans with terminal β‑GlcNAc. Additionally, the two sites show no evidence of allosteric communication. Finally, mutant BGL proteins having single functional bindings site were used to enrich GlcNAc‑capped N‑glycans or mucin type O‑glycopeptides from complex samples in glycomics and glycoproteomics analytical workfows.