Major Clades of Agaricales: a Multilocus Phylogenetic Overview
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Covered in Phylloboletellus and Numerous Clamps in Boletellus Fibuliger
PERSOONIA Published by the Rijksherbarium, Leiden Volume 11, Part 3, pp. 269-302 (1981) Notes on bolete taxonomy—III Rolf Singer Field Museum of Natural History, Chicago, U.S.A. have Contributions involving bolete taxonomy during the last ten years not only widened the knowledge and increased the number of species in the boletes and related lamellate and gastroid forms, but have also introduced a large number of of new data on characters useful for the generic and subgeneric taxonomy these is therefore timely to fungi,resulting, in part, in new taxonomical arrangements. It consider these new data with a view to integratingthem into an amended classifi- cation which, ifit pretends to be natural must take into account all observations of possible diagnostic value. It must also take into account all sufficiently described species from all phytogeographic regions. 1. Clamp connections Like any other character (including the spore print color), the presence or absence ofclamp connections in is neither in of the carpophores here nor other groups Basidiomycetes necessarily a generic or family character. This situation became very clear when occasional clamps were discovered in Phylloboletellus and numerous clamps in Boletellus fibuliger. Kiihner (1978-1980) rightly postulates that cytology and sexuality should be considered wherever at all possible. This, as he is well aware, is not feasible in most boletes, and we must be content to judgeclamp-occurrence per se, giving it importance wherever associated with other characters and within a well circumscribed and obviously homogeneous group such as Phlebopus, Paragyrodon, and Gyrodon. (Heinemann (1954) and Pegler & Young this is (1981) treat group on the family level.) Gyroporus, also clamp-bearing, considered close, but somewhat more removed than the other genera. -
Response of Ectomycorrhizal Fungi to Inorganic and Organic Forms of Nitrogen and Phosphorus
Michigan Technological University Digital Commons @ Michigan Tech Dissertations, Master's Theses and Master's Dissertations, Master's Theses and Master's Reports - Open Reports 2012 RESPONSE OF ECTOMYCORRHIZAL FUNGI TO INORGANIC AND ORGANIC FORMS OF NITROGEN AND PHOSPHORUS Christa M. Luokkala Michigan Technological University Follow this and additional works at: https://digitalcommons.mtu.edu/etds Part of the Forest Sciences Commons Copyright 2012 Christa M. Luokkala Recommended Citation Luokkala, Christa M., "RESPONSE OF ECTOMYCORRHIZAL FUNGI TO INORGANIC AND ORGANIC FORMS OF NITROGEN AND PHOSPHORUS", Master's report, Michigan Technological University, 2012. https://doi.org/10.37099/mtu.dc.etds/611 Follow this and additional works at: https://digitalcommons.mtu.edu/etds Part of the Forest Sciences Commons RESPONSE OF ECTOMYCORRHIZAL FUNGI TO INORGANIC AND ORGANIC FORMS OF NITROGEN AND PHOSPHORUS By Christa M. Luokkala A REPORT Submitted in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE In Applied Ecology MICHIGAN TECHNOLOGICAL UNIVERSITY 2012 © 2012 Christa M. Luokkala This report has been approved in partial fulfillment of the requirements for the Degree of MASTER OF SCIENCE in Applied Ecology. School of Forest Resources and Environmental Science Report Advisor: Dr. Erik A. Lilleskov Committee Member: Dr. Susan A. Bagley Committee Member: Dr. Dana L. Richter Committee Member: Dr. Christopher W. Swanston School Dean: Dr. Terry L. Sharik Table of Contents Abstract ............................................................................................................................. -
Phylogeny of the Pluteaceae (Agaricales, Basidiomycota): Taxonomy and Character Evolution
AperTO - Archivio Istituzionale Open Access dell'Università di Torino Phylogeny of the Pluteaceae (Agaricales, Basidiomycota): taxonomy and character evolution This is the author's manuscript Original Citation: Availability: This version is available http://hdl.handle.net/2318/74776 since 2016-10-06T16:59:44Z Published version: DOI:10.1016/j.funbio.2010.09.012 Terms of use: Open Access Anyone can freely access the full text of works made available as "Open Access". Works made available under a Creative Commons license can be used according to the terms and conditions of said license. Use of all other works requires consent of the right holder (author or publisher) if not exempted from copyright protection by the applicable law. (Article begins on next page) 23 September 2021 This Accepted Author Manuscript (AAM) is copyrighted and published by Elsevier. It is posted here by agreement between Elsevier and the University of Turin. Changes resulting from the publishing process - such as editing, corrections, structural formatting, and other quality control mechanisms - may not be reflected in this version of the text. The definitive version of the text was subsequently published in FUNGAL BIOLOGY, 115(1), 2011, 10.1016/j.funbio.2010.09.012. You may download, copy and otherwise use the AAM for non-commercial purposes provided that your license is limited by the following restrictions: (1) You may use this AAM for non-commercial purposes only under the terms of the CC-BY-NC-ND license. (2) The integrity of the work and identification of the author, copyright owner, and publisher must be preserved in any copy. -
Fertility-Dependent Effects of Ectomycorrhizal Fungal Communities on White Spruce Seedling Nutrition
Mycorrhiza (2015) 25:649–662 DOI 10.1007/s00572-015-0640-9 ORIGINAL PAPER Fertility-dependent effects of ectomycorrhizal fungal communities on white spruce seedling nutrition Alistair J. H. Smith II1 & Lynette R. Potvin2 & Erik A. Lilleskov2 Received: 14 January 2015 /Accepted: 6 April 2015 /Published online: 24 April 2015 # Springer-Verlag Berlin Heidelberg (outside the USA) 2015 Abstract Ectomycorrhizal fungi (EcMF) typically colonize manganese, and Atheliaceae sp. had a negative relationship with nursery seedlings, but nutritional and growth effects of these P content. Findings shed light on the community and species communities are only partly understood. To examine these ef- effects on seedling condition, revealing clear functional differ- fects, Picea glauca seedlings collected from a tree nursery natu- ences among dominants. The approach used should be scalable rally colonized by three dominant EcMF were divided between to explore function in more complex communities composed of fertilized and unfertilized treatments. After one growing season unculturable EcMF. seedlings were harvested, ectomycorrhizas identified using DNA sequencing, and seedlings analyzed for leaf nutrient concentra- Keywords Stoichiometry . Ectomycorrhizal fungal tion and content, and biomass parameters. EcMF community community effects . Nitrogen . Phosphorus . Micronutrients . structure–nutrient interactions were tested using nonmetric mul- Amphinema . Atheliaceae . Thelephora terrestris . tidimensional scaling (NMDS) combined with vector analysis of Greenhouse foliar nutrients and biomass. We identified three dominant spe- cies: Amphinema sp., Atheliaceae sp., and Thelephora terrestris. NMDS+envfit revealed significant community effects on seed- Introduction ling nutrition that differed with fertilization treatment. PERM ANOVA and regression analyses uncovered significant species Seedlings regenerating naturally or artificially are influenced by effects on host nutrient concentration, content, and stoichiometry. -
Appendix K. Survey and Manage Species Persistence Evaluation
Appendix K. Survey and Manage Species Persistence Evaluation Establishment of the 95-foot wide construction corridor and TEWAs would likely remove individuals of H. caeruleus and modify microclimate conditions around individuals that are not removed. The removal of forests and host trees and disturbance to soil could negatively affect H. caeruleus in adjacent areas by removing its habitat, disturbing the roots of host trees, and affecting its mycorrhizal association with the trees, potentially affecting site persistence. Restored portions of the corridor and TEWAs would be dominated by early seral vegetation for approximately 30 years, which would result in long-term changes to habitat conditions. A 30-foot wide portion of the corridor would be maintained in low-growing vegetation for pipeline maintenance and would not provide habitat for the species during the life of the project. Hygrophorus caeruleus is not likely to persist at one of the sites in the project area because of the extent of impacts and the proximity of the recorded observation to the corridor. Hygrophorus caeruleus is likely to persist at the remaining three sites in the project area (MP 168.8 and MP 172.4 (north), and MP 172.5-172.7) because the majority of observations within the sites are more than 90 feet from the corridor, where direct effects are not anticipated and indirect effects are unlikely. The site at MP 168.8 is in a forested area on an east-facing slope, and a paved road occurs through the southeast part of the site. Four out of five observations are more than 90 feet southwest of the corridor and are not likely to be directly or indirectly affected by the PCGP Project based on the distance from the corridor, extent of forests surrounding the observations, and proximity to an existing open corridor (the road), indicating the species is likely resilient to edge- related effects at the site. -
Diversity and Phylogeny of Suillus (Suillaceae; Boletales; Basidiomycota) from Coniferous Forests of Pakistan
INTERNATIONAL JOURNAL OF AGRICULTURE & BIOLOGY ISSN Print: 1560–8530; ISSN Online: 1814–9596 13–870/2014/16–3–489–497 http://www.fspublishers.org Full Length Article Diversity and Phylogeny of Suillus (Suillaceae; Boletales; Basidiomycota) from Coniferous Forests of Pakistan Samina Sarwar * and Abdul Nasir Khalid Department of Botany, University of the Punjab, Quaid-e-Azam Campus, Lahore, 54950, Pakistan *For correspondence: [email protected] Abstract Suillus (Boletales; Basidiomycota) is an ectomycorrhizal genus, generally associated with Pinaceae. Coniferous forests of Pakistan are rich in mycodiversity and Suillus species are found as early appearing fungi in the vicinity of conifers. This study reports the diversity of Suillus collected during a period of three (3) years (2008-2011). From 32 basidiomata of Suillus collected, 12 species of this genus were identified. These basidiomata were characterized morphologically, and phylogenetically by amplifying and sequencing the ITS region of rDNA. © 2014 Friends Science Publishers Keywords: Moist temperate forests; PCR; rDNA; Ectomycorrhizae Introduction adequate temperature make the environment suitable for the growth of mushrooms in these forests. Suillus (Suillaceae, Basidiomycota, Boletales ) forms This paper described the diversity of Suillus (Boletes, ectomycorrhizal associations mostly with members of the Fungi) with the help of the anatomical, morphological and Pinaceae and is characterized by having slimy caps, genetic analyses as little knowledge is available from forests glandular dots on the stipe, large pore openings that are in Pakistan. often arranged radially and a partial veil that leaves a ring or tissue hanging from the cap margin (Kuo, 2004). This genus Materials and Methods is mostly distributed in northern temperate locations, although some species have been reported in the southern Sporocarp Collection hemisphere as well (Kirk et al ., 2008). -
Basidiomycota: Agaricales) Introducing the Ant-Associated Genus Myrmecopterula Gen
Leal-Dutra et al. IMA Fungus (2020) 11:2 https://doi.org/10.1186/s43008-019-0022-6 IMA Fungus RESEARCH Open Access Reclassification of Pterulaceae Corner (Basidiomycota: Agaricales) introducing the ant-associated genus Myrmecopterula gen. nov., Phaeopterula Henn. and the corticioid Radulomycetaceae fam. nov. Caio A. Leal-Dutra1,5, Gareth W. Griffith1* , Maria Alice Neves2, David J. McLaughlin3, Esther G. McLaughlin3, Lina A. Clasen1 and Bryn T. M. Dentinger4 Abstract Pterulaceae was formally proposed to group six coralloid and dimitic genera: Actiniceps (=Dimorphocystis), Allantula, Deflexula, Parapterulicium, Pterula, and Pterulicium. Recent molecular studies have shown that some of the characters currently used in Pterulaceae do not distinguish the genera. Actiniceps and Parapterulicium have been removed, and a few other resupinate genera were added to the family. However, none of these studies intended to investigate the relationship between Pterulaceae genera. In this study, we generated 278 sequences from both newly collected and fungarium samples. Phylogenetic analyses supported with morphological data allowed a reclassification of Pterulaceae where we propose the introduction of Myrmecopterula gen. nov. and Radulomycetaceae fam. nov., the reintroduction of Phaeopterula, the synonymisation of Deflexula in Pterulicium, and 53 new combinations. Pterula is rendered polyphyletic requiring a reclassification; thus, it is split into Pterula, Myrmecopterula gen. nov., Pterulicium and Phaeopterula. Deflexula is recovered as paraphyletic alongside several Pterula species and Pterulicium, and is sunk into the latter genus. Phaeopterula is reintroduced to accommodate species with darker basidiomes. The neotropical Myrmecopterula gen. nov. forms a distinct clade adjacent to Pterula, and most members of this clade are associated with active or inactive attine ant nests. -
Phylogenetic Classification of Trametes
TAXON 60 (6) • December 2011: 1567–1583 Justo & Hibbett • Phylogenetic classification of Trametes SYSTEMATICS AND PHYLOGENY Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset Alfredo Justo & David S. Hibbett Clark University, Biology Department, 950 Main St., Worcester, Massachusetts 01610, U.S.A. Author for correspondence: Alfredo Justo, [email protected] Abstract: The phylogeny of Trametes and related genera was studied using molecular data from ribosomal markers (nLSU, ITS) and protein-coding genes (RPB1, RPB2, TEF1-alpha) and consequences for the taxonomy and nomenclature of this group were considered. Separate datasets with rDNA data only, single datasets for each of the protein-coding genes, and a combined five-marker dataset were analyzed. Molecular analyses recover a strongly supported trametoid clade that includes most of Trametes species (including the type T. suaveolens, the T. versicolor group, and mainly tropical species such as T. maxima and T. cubensis) together with species of Lenzites and Pycnoporus and Coriolopsis polyzona. Our data confirm the positions of Trametes cervina (= Trametopsis cervina) in the phlebioid clade and of Trametes trogii (= Coriolopsis trogii) outside the trametoid clade, closely related to Coriolopsis gallica. The genus Coriolopsis, as currently defined, is polyphyletic, with the type species as part of the trametoid clade and at least two additional lineages occurring in the core polyporoid clade. In view of these results the use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenclatural combinations would be necessary, and the classification of additional species (i.e., not yet described and/or sampled for mo- lecular data) in Trametes based on morphological characters alone will still be possible. -
Into One of the Two Major Cora Clades (Lücking Et Al
Fungal Diversity into one of the two major Cora clades (Lücking et al. 2014). A (2013). Both share the strongly appressed, filamentous thallus closer relative of C. barbulata is the terrestrial C. arachnoidea in which the horizontally oriented fibrils are embedded in a J. E. Hern. & Lücking (Fig. 128a–c), which is grey-brown gelatinous matrix that gives the thallus a strong metallic shim- when fresh and uniformly thinly tomentose on the upper sur- mer. While the phylogenetic distance between D. metallicum face (Lücking et al. 2013). Cora barbulata can be distin- and its sister species, D. gomezianum,isconsiderable(Dal- guished from C. aspera mainly by the coarsely crenulate, Forno et al., in prep.), the morphological differences are mi- undulate lobe margins and the different hymenophore, nor: D. metallicum has a thinner thallus with indistinct medul- forming large, irregularly dispersed patches on the underside. la, the cyanobacterial filaments are broader (likely influenced by the fungus which produces a sheath with more distinctly 217. Dictyonema gomezianum Lücking, Dal-Forno & puzzle-shaped cells), and particularly the associated fungal Lawrey, sp. nov. hyphae are thicker (4–6 μm). Inocybaceae Jülich Index Fungorum number: IF551502; Facesoffungi The family Inocybaceae is a monophyletic lineage number: FoF01050; Fig. 131d–f within Agaricales. It is species rich and has a world- Etymology: Dedicated to the late Dr. Luis Diego Gómez, wide distribution. The species are small to medium prominent Costa Rican botanist, naturalist, and conservation- sized with a brown spore deposit, and most species ist and long-time director of Las Cruces Biological Station. form ectomycorrhiza with a broad range of host trees Holotype: R. -
Reviewing the World's Edible Mushroom Species: a New
Received: 5 September 2020 Revised: 4 December 2020 Accepted: 21 December 2020 DOI: 10.1111/1541-4337.12708 COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY Reviewing the world’s edible mushroom species: A new evidence-based classification system Huili Li1,2,3 Yang Tian4 Nelson Menolli Jr5,6 Lei Ye1,2,3 Samantha C. Karunarathna1,2,3 Jesus Perez-Moreno7 Mohammad Mahmudur Rahman8 Md Harunur Rashid8 Pheng Phengsintham9 Leela Rizal10 Taiga Kasuya11 Young Woon Lim12 Arun Kumar Dutta13 Abdul Nasir Khalid14 Le Thanh Huyen15 Marilen Parungao Balolong16 Gautam Baruah17 Sumedha Madawala18 Naritsada Thongklang19,20 Kevin D. Hyde19,20,21 Paul M. Kirk22 Jianchu Xu1,2,3 Jun Sheng23 Eric Boa24 Peter E. Mortimer1,3 1 CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China 2 East and Central Asia Regional Office, World Agroforestry Centre (ICRAF), Kunming, Yunnan, China 3 Centre for Mountain Futures, Kunming Institute of Botany, Kunming, Yunnan, China 4 College of Food Science and Technology, Yunnan Agricultural University, Kunming, Yunnan, China 5 Núcleo de Pesquisa em Micologia, Instituto de Botânica, São Paulo, Brazil 6 Departamento de Ciências da Natureza e Matemática (DCM), Subárea de Biologia (SAB), Instituto Federal de Educação, Ciência e Tecnologia de São Paulo (IFSP), São Paulo, Brazil 7 Colegio de Postgraduados, Campus Montecillo, Texcoco, México 8 Global Centre for Environmental Remediation (GCER), Faculty of Science, The University of Newcastle, -
Fruiting Body Form, Not Nutritional Mode, Is the Major Driver of Diversification in Mushroom-Forming Fungi
Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi Marisol Sánchez-Garcíaa,b, Martin Rybergc, Faheema Kalsoom Khanc, Torda Vargad, László G. Nagyd, and David S. Hibbetta,1 aBiology Department, Clark University, Worcester, MA 01610; bUppsala Biocentre, Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, SE-75005 Uppsala, Sweden; cDepartment of Organismal Biology, Evolutionary Biology Centre, Uppsala University, 752 36 Uppsala, Sweden; and dSynthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Center, 6726 Szeged, Hungary Edited by David M. Hillis, The University of Texas at Austin, Austin, TX, and approved October 16, 2020 (received for review December 22, 2019) With ∼36,000 described species, Agaricomycetes are among the and the evolution of enclosed spore-bearing structures. It has most successful groups of Fungi. Agaricomycetes display great di- been hypothesized that the loss of ballistospory is irreversible versity in fruiting body forms and nutritional modes. Most have because it involves a complex suite of anatomical features gen- pileate-stipitate fruiting bodies (with a cap and stalk), but the erating a “surface tension catapult” (8, 11). The effect of gas- group also contains crust-like resupinate fungi, polypores, coral teroid fruiting body forms on diversification rates has been fungi, and gasteroid forms (e.g., puffballs and stinkhorns). Some assessed in Sclerodermatineae, Boletales, Phallomycetidae, and Agaricomycetes enter into ectomycorrhizal symbioses with plants, Lycoperdaceae, where it was found that lineages with this type of while others are decayers (saprotrophs) or pathogens. We constructed morphology have diversified at higher rates than nongasteroid a megaphylogeny of 8,400 species and used it to test the following lineages (12). -
Evolution of Complex Fruiting-Body Morphologies in Homobasidiomycetes
Received 18April 2002 Accepted 26 June 2002 Publishedonline 12September 2002 Evolutionof complexfruiting-bo dymorpholog ies inhomobasidi omycetes David S.Hibbett * and Manfred Binder BiologyDepartment, Clark University, 950Main Street,Worcester, MA 01610,USA The fruiting bodiesof homobasidiomycetes include some of the most complex formsthat have evolved in thefungi, such as gilled mushrooms,bracket fungi andpuffballs (‘pileate-erect’) forms.Homobasidio- mycetesalso includerelatively simple crust-like‘ resupinate’forms, however, which accountfor ca. 13– 15% ofthedescribed species in thegroup. Resupinatehomobasidiomycetes have beeninterpreted either asa paraphyletic grade ofplesiomorphic formsor apolyphyletic assemblage ofreducedforms. The former view suggeststhat morphological evolutionin homobasidiomyceteshas beenmarked byindependentelab- oration in many clades,whereas the latter view suggeststhat parallel simplication has beena common modeof evolution.To infer patternsof morphological evolution in homobasidiomycetes,we constructed phylogenetic treesfrom adatasetof 481 speciesand performed ancestral statereconstruction (ASR) using parsimony andmaximum likelihood (ML)methods. ASR with both parsimony andML implies that the ancestorof the homobasidiomycetes was resupinate, and that therehave beenmultiple gains andlosses ofcomplex formsin thehomobasidiomycetes. We also usedML toaddresswhether there is anasymmetry in therate oftransformations betweensimple andcomplex forms.Models of morphological evolution inferredwith MLindicate that therate