Notes, Outline and Divergence Times of Basidiomycota
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Major Clades of Agaricales: a Multilocus Phylogenetic Overview
Mycologia, 98(6), 2006, pp. 982–995. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Major clades of Agaricales: a multilocus phylogenetic overview P. Brandon Matheny1 Duur K. Aanen Judd M. Curtis Laboratory of Genetics, Arboretumlaan 4, 6703 BD, Biology Department, Clark University, 950 Main Street, Wageningen, The Netherlands Worcester, Massachusetts, 01610 Matthew DeNitis Vale´rie Hofstetter 127 Harrington Way, Worcester, Massachusetts 01604 Department of Biology, Box 90338, Duke University, Durham, North Carolina 27708 Graciela M. Daniele Instituto Multidisciplinario de Biologı´a Vegetal, M. Catherine Aime CONICET-Universidad Nacional de Co´rdoba, Casilla USDA-ARS, Systematic Botany and Mycology de Correo 495, 5000 Co´rdoba, Argentina Laboratory, Room 304, Building 011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 Dennis E. Desjardin Department of Biology, San Francisco State University, Jean-Marc Moncalvo San Francisco, California 94132 Centre for Biodiversity and Conservation Biology, Royal Ontario Museum and Department of Botany, University Bradley R. Kropp of Toronto, Toronto, Ontario, M5S 2C6 Canada Department of Biology, Utah State University, Logan, Utah 84322 Zai-Wei Ge Zhu-Liang Yang Lorelei L. Norvell Kunming Institute of Botany, Chinese Academy of Pacific Northwest Mycology Service, 6720 NW Skyline Sciences, Kunming 650204, P.R. China Boulevard, Portland, Oregon 97229-1309 Jason C. Slot Andrew Parker Biology Department, Clark University, 950 Main Street, 127 Raven Way, Metaline Falls, Washington 99153- Worcester, Massachusetts, 01609 9720 Joseph F. Ammirati Else C. Vellinga University of Washington, Biology Department, Box Department of Plant and Microbial Biology, 111 355325, Seattle, Washington 98195 Koshland Hall, University of California, Berkeley, California 94720-3102 Timothy J. -
Reviewing the World's Edible Mushroom Species: a New
Received: 5 September 2020 Revised: 4 December 2020 Accepted: 21 December 2020 DOI: 10.1111/1541-4337.12708 COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY Reviewing the world’s edible mushroom species: A new evidence-based classification system Huili Li1,2,3 Yang Tian4 Nelson Menolli Jr5,6 Lei Ye1,2,3 Samantha C. Karunarathna1,2,3 Jesus Perez-Moreno7 Mohammad Mahmudur Rahman8 Md Harunur Rashid8 Pheng Phengsintham9 Leela Rizal10 Taiga Kasuya11 Young Woon Lim12 Arun Kumar Dutta13 Abdul Nasir Khalid14 Le Thanh Huyen15 Marilen Parungao Balolong16 Gautam Baruah17 Sumedha Madawala18 Naritsada Thongklang19,20 Kevin D. Hyde19,20,21 Paul M. Kirk22 Jianchu Xu1,2,3 Jun Sheng23 Eric Boa24 Peter E. Mortimer1,3 1 CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China 2 East and Central Asia Regional Office, World Agroforestry Centre (ICRAF), Kunming, Yunnan, China 3 Centre for Mountain Futures, Kunming Institute of Botany, Kunming, Yunnan, China 4 College of Food Science and Technology, Yunnan Agricultural University, Kunming, Yunnan, China 5 Núcleo de Pesquisa em Micologia, Instituto de Botânica, São Paulo, Brazil 6 Departamento de Ciências da Natureza e Matemática (DCM), Subárea de Biologia (SAB), Instituto Federal de Educação, Ciência e Tecnologia de São Paulo (IFSP), São Paulo, Brazil 7 Colegio de Postgraduados, Campus Montecillo, Texcoco, México 8 Global Centre for Environmental Remediation (GCER), Faculty of Science, The University of Newcastle, -
Biodiversity of Wood-Decay Fungi in Italy
AperTO - Archivio Istituzionale Open Access dell'Università di Torino Biodiversity of wood-decay fungi in Italy This is the author's manuscript Original Citation: Availability: This version is available http://hdl.handle.net/2318/88396 since 2016-10-06T16:54:39Z Published version: DOI:10.1080/11263504.2011.633114 Terms of use: Open Access Anyone can freely access the full text of works made available as "Open Access". Works made available under a Creative Commons license can be used according to the terms and conditions of said license. Use of all other works requires consent of the right holder (author or publisher) if not exempted from copyright protection by the applicable law. (Article begins on next page) 28 September 2021 This is the author's final version of the contribution published as: A. Saitta; A. Bernicchia; S.P. Gorjón; E. Altobelli; V.M. Granito; C. Losi; D. Lunghini; O. Maggi; G. Medardi; F. Padovan; L. Pecoraro; A. Vizzini; A.M. Persiani. Biodiversity of wood-decay fungi in Italy. PLANT BIOSYSTEMS. 145(4) pp: 958-968. DOI: 10.1080/11263504.2011.633114 The publisher's version is available at: http://www.tandfonline.com/doi/abs/10.1080/11263504.2011.633114 When citing, please refer to the published version. Link to this full text: http://hdl.handle.net/2318/88396 This full text was downloaded from iris - AperTO: https://iris.unito.it/ iris - AperTO University of Turin’s Institutional Research Information System and Open Access Institutional Repository Biodiversity of wood-decay fungi in Italy A. Saitta , A. Bernicchia , S. P. Gorjón , E. -
Toxic Fungi of Western North America
Toxic Fungi of Western North America by Thomas J. Duffy, MD Published by MykoWeb (www.mykoweb.com) March, 2008 (Web) August, 2008 (PDF) 2 Toxic Fungi of Western North America Copyright © 2008 by Thomas J. Duffy & Michael G. Wood Toxic Fungi of Western North America 3 Contents Introductory Material ........................................................................................... 7 Dedication ............................................................................................................... 7 Preface .................................................................................................................... 7 Acknowledgements ................................................................................................. 7 An Introduction to Mushrooms & Mushroom Poisoning .............................. 9 Introduction and collection of specimens .............................................................. 9 General overview of mushroom poisonings ......................................................... 10 Ecology and general anatomy of fungi ................................................................ 11 Description and habitat of Amanita phalloides and Amanita ocreata .............. 14 History of Amanita ocreata and Amanita phalloides in the West ..................... 18 The classical history of Amanita phalloides and related species ....................... 20 Mushroom poisoning case registry ...................................................................... 21 “Look-Alike” mushrooms ..................................................................................... -
Omphalina Sensu Lato in North America 3: Chromosera Gen. Nov.*
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Sydowia Beihefte Jahr/Year: 1995 Band/Volume: 10 Autor(en)/Author(s): Redhead S. A., Ammirati Joseph F., Norvell L. L. Artikel/Article: Omphalina sensu lato in North America 3: Chromosera gen. nov. 155-164 ©Verlag Ferdinand Berger & Söhne Ges.m.b.H., Horn, Austria, download unter www.zobodat.at Omphalina sensu lato in North America 3: Chromosera gen. nov.* S. A. Redhead1, J. F Ammirati2 & L. L. Norvell2 Centre for Land and Biological Resources Research, Research Branch, Agriculture and Agri-Food Canada, Ottawa, Ontario, Canada, K1A 0C6 department of Botany, KB-15, University of Washington, Seattle, WA 98195, U.S.A. Redhead, S. A. , J. F. Ammirati & L. L. Norvell (1995).Omphalina sensu lato in North America 3: Chromosera gen. nov. -Beih. Sydowia X: 155-167. Omphalina cyanophylla and Mycena lilacifolia are considered to be synonymous. A new genus Chromosera is described to acccommodate C. cyanophylla. North American specimens are described. Variation in the dextrinoid reaction of the trama is discussed as is the circumscription of the genusMycena. Peculiar pigment corpuscles are illustrated. Keywords: Agaricales, amyloid, Basidiomycota, dextrinoid, Corrugaria, Hydropus, Mycena, Omphalina, taxonomy. We have repeatedly collected - and puzzled over - an enigmatic species commonly reported in modern literature under different names: Mycena lilacifolia (Peck) Smith in North America (Smith, 1947, 1949; Smith & al., 1979; Pomerleau, 1980; McKnight & McKnight, 1987) or Europe (Horak, 1985) and Omphalia cyanophylla (Fr.) Quel, or Omphalina cyanophylla (Fr.) Quel, in Europe (Favre, 1960; Kühner & Romagnesi, 1953; Kühner, 1957; Courtecuisse, 1986; Krieglsteiner & Enderle, 1987). -
<I>Hygrocybe Griseobrunnea</I>
ISSN (print) 0093-4666 © 2013. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/125.243 Volume 125, pp. 243–249 July–September 2013 Hygrocybe griseobrunnea, a new brown species from China Chao-Qun Wang 1, 2, 3, Tai-Hui Li 1, 2* & Bin Song 2 1 South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China 2 State Key Laboratory of Applied Microbiology, South China (The Ministry—Province Joint Development), Guangdong Institute of Microbiology, Guangzhou 510070, China 3 University of Chinese Academy of Sciences, Beijing 100049, China * Correspondence to: [email protected] Abstract — Hygrocybe griseobrunnea, a new species in Hygrocybe subsect. Squamulosae, is described and illustrated based on the morphological characters and molecular data. The fungus is characterized by numerous greyish brown to brown or dark brown squamules on the pileus surface, adnate to shortly decurrent lamellae, and a trichodermal pileipellis. Key words — Basidiomycetes, Hygrophoraceae, taxonomy Introduction The genus Hygrocybe (Fr.) P. Kumm. (Hygrophoraceae, Agaricales, Basidiomycota) is distributed worldwide, with ~150 accepted species (Kirk et al. 2008) and ~670 proposed names (http://www.indexfungorum.org). Hygrocybe sect. Squamulosae (Bataille) Singer is characterized by the dry fruitbody, squamulose or tomentose pileus, smooth stipe, and trichodermal pileipellis (at least in the pileus centre) (Boertmann 2010). More than 15 species in subsect. Squamulosae have been reported from different parts of the world (Singer 1986, Arnolds 1995, Borgen & Senn-Irlet 1995, Desjardin & Hemmes 1997, Young & Wood 1997, Borgen & Arnolds 2004, Cantrell & Lodge 2004, Leelavathy et al. 2006, Boertmann 2010, Ronikier & Borgen 2010, Vrinda et al. 2013). Only three species of the subsection — Hygrocybe cantharellus (Schwein.) Murrill, H. -
Sporeprint, Spring 2018
LONG ISLAND MYCOLOGICAL CLUB http://limyco.org Available in full color on our website VOLUME 26, NUMBER 1, SPRING, 2018 Rhodocybe tugrulii: THE SEASON’S BOUNTY First North American record We had a good season thanks to slightly above Among the pink-spored Entolomataceae, normal rainfall, at least on eastern Long Island, Rhodocybe is distinguished by spores that in end where 50.35 inches were recorded at Upton’s Brook- view have 6-12 facets, the surface irregularly orna- haven National Lab., about 1.5 inches above average. mented by pustules; and by a lack of clamp connec- This compares favorably with the 2015 and 2016 to- tions. It is a small genus, with only 168 species (the tals, both about 39”. In contrast, Islip recorded only 43 present one included) listed in Mycobank, with a inches, 3 below normal, while NYC reached 45 inches, similar number in Index Fungorum if one discounts 5” below their annual average. The high geographic the recent controversial revisions that have allotted variability on L.I. requires constant vigilance in order many to other genera, particularly Clitopilus. With to hold our forays in the most productive habitats and so few species, the majority of serious collectors are is the reason for frequent foray site changes. Benefi- unfamiliar with this genus, which has few distinc- cially, the rainfall pattern was fairly equally distrib- tive macrocharacters. Moreover, in contrast to other uted throughout our collecting season, only November members of the Entolomataceae, the sporeprint being significantly lower at 2.26”. color may be grayish or No Black Morels, white2. -
Notes, Outline and Divergence Times of Basidiomycota
Fungal Diversity (2019) 99:105–367 https://doi.org/10.1007/s13225-019-00435-4 (0123456789().,-volV)(0123456789().,- volV) Notes, outline and divergence times of Basidiomycota 1,2,3 1,4 3 5 5 Mao-Qiang He • Rui-Lin Zhao • Kevin D. Hyde • Dominik Begerow • Martin Kemler • 6 7 8,9 10 11 Andrey Yurkov • Eric H. C. McKenzie • Olivier Raspe´ • Makoto Kakishima • Santiago Sa´nchez-Ramı´rez • 12 13 14 15 16 Else C. Vellinga • Roy Halling • Viktor Papp • Ivan V. Zmitrovich • Bart Buyck • 8,9 3 17 18 1 Damien Ertz • Nalin N. Wijayawardene • Bao-Kai Cui • Nathan Schoutteten • Xin-Zhan Liu • 19 1 1,3 1 1 1 Tai-Hui Li • Yi-Jian Yao • Xin-Yu Zhu • An-Qi Liu • Guo-Jie Li • Ming-Zhe Zhang • 1 1 20 21,22 23 Zhi-Lin Ling • Bin Cao • Vladimı´r Antonı´n • Teun Boekhout • Bianca Denise Barbosa da Silva • 18 24 25 26 27 Eske De Crop • Cony Decock • Ba´lint Dima • Arun Kumar Dutta • Jack W. Fell • 28 29 30 31 Jo´ zsef Geml • Masoomeh Ghobad-Nejhad • Admir J. Giachini • Tatiana B. Gibertoni • 32 33,34 17 35 Sergio P. Gorjo´ n • Danny Haelewaters • Shuang-Hui He • Brendan P. Hodkinson • 36 37 38 39 40,41 Egon Horak • Tamotsu Hoshino • Alfredo Justo • Young Woon Lim • Nelson Menolli Jr. • 42 43,44 45 46 47 Armin Mesˇic´ • Jean-Marc Moncalvo • Gregory M. Mueller • La´szlo´ G. Nagy • R. Henrik Nilsson • 48 48 49 2 Machiel Noordeloos • Jorinde Nuytinck • Takamichi Orihara • Cheewangkoon Ratchadawan • 50,51 52 53 Mario Rajchenberg • Alexandre G. -
Biodiversity and Morphological Characterization of Mushrooms at the Tropical Moist Deciduous Forest Region of Bangladesh
American Journal of Experimental Agriculture 8(4): 235-252, 2015, Article no.AJEA.2015.167 ISSN: 2231-0606 SCIENCEDOMAIN international www.sciencedomain.org Biodiversity and Morphological Characterization of Mushrooms at the Tropical Moist Deciduous Forest Region of Bangladesh M. I. Rumainul1, F. M. Aminuzzaman1* and M. S. M. Chowdhury1 1Department of Plant Pathology, Faculty of Agriculture, Sher-e-Bangla Agricultural University, Sher-e-Bangla Nagar, Dhaka-1207, Bangladesh. Authors’ contributions This work was carried out in collaboration with all authors. Author MIR carried out the research and wrote the first draft of the manuscript. Author FMA designed use supervised and edited the manuscript. All authors read and approved the final manuscript. Article Information DOI: 10.9734/AJEA/2015/17301 Editor(s): (1) Sławomir Borek, Department of Plant Physiology, Adam Mickiewicz University, Poland. Reviewers: (1) Anonymous, Ghana. (2) Anonymous, India. (3) Eduardo Bernardi, Departamento de Microbiologia, Universidade Federal de Pelotas, Brazil. Complete Peer review History: http://www.sciencedomain.org/review-history.php?iid=1078&id=2&aid=9182 Received 7th March 2015 th Original Research Article Accepted 17 April 2015 Published 8th May 2015 ABSTRACT Mushroom flora is an important component of the ecosystem and their biodiversity study has been largely neglected and not documented for the tropical moist deciduous forest regions of Bangladesh. This investigation was conducted in seven different areas of tropical moist deciduous forest region of Bangladesh namely Dhaka, Gazipur, Bogra, Rajshahi, Pabna, Jaipurhat and Dinajpur. Mushroom flora associated with these forest regions were collected, photographed and preserved. A total of fifty samples were collected and identified to fourteen genera and twenty four species. -
Guyanagarika, a New Ectomycorrhizal Genus of Agaricales from the Neotropics
fungal biology 120 (2016) 1540e1553 journal homepage: www.elsevier.com/locate/funbio Guyanagarika, a new ectomycorrhizal genus of Agaricales from the Neotropics a, ,1 b c Marisol SANCHEZ-GARCIA * , Terry W. HENKEL , Mary Catherine AIME , Matthew E. SMITHd, Patrick Brandon MATHENYa aDepartment of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 37996, USA bDepartment of Biological Sciences, Humboldt State University, Arcata, CA 95521, USA cDepartment of Botany & Plant Pathology, Purdue University, West Lafayette, IN 47907, USA dDepartment of Plant Pathology, University of Florida, Gainesville, FL 32611, USA article info abstract Article history: A new genus and three new species of Agaricales are described from the Pakaraima Moun- Received 6 June 2016 tains of Guyana in the central Guiana Shield. All three of these new species fruit on the Received in revised form ground in association with species of the ectomycorrhizal (ECM) tree genus Dicymbe (Faba- 29 July 2016 ceae subfam. Caesalpinioideae) and one species has been shown to form ectomycorrhizas. Accepted 9 August 2016 Multi-locus molecular phylogenetic analyses place Guyanagarika gen. nov. within the Cata- Available online 20 August 2016 thelasma clade, a lineage in the suborder Tricholomatineae of the Agaricales. We formally Corresponding Editor: recognize this ‘Catathelasma clade’ as an expanded family Catathelasmataceae that in- Ursula Peintner cludes the genera Callistosporium, Catathelasma, Guyanagarika, Macrocybe, Pleurocollybia, and Pseudolaccaria. Within the Catathelasmataceae, Catathelasma and Guyanagarika repre- Keywords: sent independent origins of the ectomycorrhizal habit. Guyanagarika is the first docu- Basidiomycota mented case of an ECM Agaricales genus known only from the Neotropics. Cryptic species ª 2016 British Mycological Society. -
Complete References List
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High-Level Classification of the Fungi and a Tool for Evolutionary Ecological Analyses
Fungal Diversity (2018) 90:135–159 https://doi.org/10.1007/s13225-018-0401-0 (0123456789().,-volV)(0123456789().,-volV) High-level classification of the Fungi and a tool for evolutionary ecological analyses 1,2,3 4 1,2 3,5 Leho Tedersoo • Santiago Sa´nchez-Ramı´rez • Urmas Ko˜ ljalg • Mohammad Bahram • 6 6,7 8 5 1 Markus Do¨ ring • Dmitry Schigel • Tom May • Martin Ryberg • Kessy Abarenkov Received: 22 February 2018 / Accepted: 1 May 2018 / Published online: 16 May 2018 Ó The Author(s) 2018 Abstract High-throughput sequencing studies generate vast amounts of taxonomic data. Evolutionary ecological hypotheses of the recovered taxa and Species Hypotheses are difficult to test due to problems with alignments and the lack of a phylogenetic backbone. We propose an updated phylum- and class-level fungal classification accounting for monophyly and divergence time so that the main taxonomic ranks are more informative. Based on phylogenies and divergence time estimates, we adopt phylum rank to Aphelidiomycota, Basidiobolomycota, Calcarisporiellomycota, Glomeromycota, Entomoph- thoromycota, Entorrhizomycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota and Olpidiomycota. We accept nine subkingdoms to accommodate these 18 phyla. We consider the kingdom Nucleariae (phyla Nuclearida and Fonticulida) as a sister group to the Fungi. We also introduce a perl script and a newick-formatted classification backbone for assigning Species Hypotheses into a hierarchical taxonomic framework, using this or any other classification system. We provide an example