A New Species of Polyipnus (Teleostei: Stomiiformes) from the Western Pacific, with Comments on the P
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1 Exon Probe Sets and Bioinformatics Pipelines for All Levels of Fish Phylogenomics
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics 2 3 Lily C. Hughes1,2,3,*, Guillermo Ortí1,3, Hadeel Saad1, Chenhong Li4, William T. White5, Carole 4 C. Baldwin3, Keith A. Crandall1,2, Dahiana Arcila3,6,7, and Ricardo Betancur-R.7 5 6 1 Department of Biological Sciences, George Washington University, Washington, D.C., U.S.A. 7 2 Computational Biology Institute, Milken Institute of Public Health, George Washington 8 University, Washington, D.C., U.S.A. 9 3 Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian 10 Institution, Washington, D.C., U.S.A. 11 4 College of Fisheries and Life Sciences, Shanghai Ocean University, Shanghai, China 12 5 CSIRO Australian National Fish Collection, National Research Collections of Australia, 13 Hobart, TAS, Australia 14 6 Sam Noble Oklahoma Museum of Natural History, Norman, O.K., U.S.A. 15 7 Department of Biology, University of Oklahoma, Norman, O.K., U.S.A. 16 17 *Corresponding author: Lily C. Hughes, [email protected]. 18 Current address: Department of Organismal Biology and Anatomy, University of Chicago, 19 Chicago, IL. 20 21 Keywords: Actinopterygii, Protein coding, Systematics, Phylogenetics, Evolution, Target 22 capture 23 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. -
A Framework of Ichthyofaunal Ecostratigraphy of the Oligocene–Early Miocene Strata of the Polish Outer Carpathian Basin
Annales Societatis Geologorum Poloniae (2006), vol. 76: 1–111. A FRAMEWORK OF ICHTHYOFAUNAL ECOSTRATIGRAPHY OF THE OLIGOCENE–EARLY MIOCENE STRATA OF THE POLISH OUTER CARPATHIAN BASIN Janusz KOTLARCZYK1, Anna JERZMAÑSKA2, Ewa ŒWIDNICKA2 & Teresa WISZNIOWSKA2 1 Department of General and Mathematical Geology, AGH University of Science and Technology, Al. Mickiewicza 30, 30-059 Kraków, Poland 2 Department of Palaeozoology, Institute of Zoology, University of Wroc³aw, Sienkiewicza, 21, 50-335 Wroc³aw, Poland Kotlarczyk, J., Jerzmañska, A., Œwidnicka, E. & Wiszniowska, T., 2006. A framework of ichthyofaunal ecostrati- graphy of the Oligocene–Early Miocene strata of the Polish Outer Carpathian basin. Annales Societatis Geologorum Poloniae, 76: 1–111. Abstract: The paper presents the results of an analysis of ichthyofaunal variability throughout the section of the Menilite-Krosno Series (MKS) in the Outer Carpathians of Poland. The studied tanathocoenoses were formed at the bottom of a more than 2,000 m deep northern basin of the Tethys, being largely represented by the continental rise and bottoms of its narrow furrows, and – to a lesser degree – the continental slope and slopes of a submarine high. Lateral variability of statististically representative assemblages of tanathocoenoses hosted in thin, isochro- nous horizons is interpreted as a result of both local changes of ichthyocoenoses and the influence of post-mortem relocation of fishes that mainly dwelled the shelf and upper continental slope. Vertical variability, in turn, is considered as a resulting from changeable conditions of the ecological environment, the input and outflow of taxa whose evolution proceeded in the Indo-Pacific area, and the species extinction. Changeability of ichthyofauna within a ca. -
Hydrology, Hydraulics / River Planning SUPPORTING REPORT (1) – I HYDROLOGY, HYDRAULICS / RIVER PLANNING
The Study on Comprehensive Disaster Prevention around Mayon Volcano SUPPORTING REPORT (1) (Part I: Master Plan) I : Hydrology, Hydraulics / River Planning SUPPORTING REPORT (1) – I HYDROLOGY, HYDRAULICS / RIVER PLANNING Table of Contents Page 1. METEOROLOGY...................................................................................................I - 1 1.1 Climate..............................................................................................................I - 1 1.1.1 General ................................................................................................I - 1 1.1.2 Southwest Monsoon............................................................................I - 1 1.1.3 Northeast Monsoon and the North Pacific Trade Wind ......................I - 1 1.1.4 Tropical Cyclones ...............................................................................I - 2 1.1.5 Orographic Effects ..............................................................................I - 2 1.2 Rainfall..............................................................................................................I - 2 1.3 Tropical Cyclones .............................................................................................I - 3 1.4 Temperature, Relative Humidity and Wind ......................................................I - 4 1.5 Meteorological Observation..............................................................................I - 6 1.5.1 Rainfall................................................................................................I -
Mining Amid Typhoons: Large-Scale Mining and Typhoon Vulnerability in the Philippines
The Extractive Industries and Society 2 (2015) 445–461 Contents lists available at ScienceDirect The Extractive Industries and Society journal homepage: www.elsevier.com/locate/exis Mining amid typhoons: Large-scale mining and typhoon vulnerability in the Philippines William N. Holden * a Department of Geography, University of Calgary, Calgary, Alberta T2N 1N4, Canada ARTICLE INFO ABSTRACT Article history: This article examines the problems inherent in locating large-scale mining projects in the Philippines, a Received 30 January 2015 nation vulnerable to typhoons and heavy rainfall events. The government of the Philippines has Received in revised form 29 April 2015 emphasized large-scale mining as a method of achieving economic development but the Philippines are Available online 18 May 2015 highly vulnerable to typhoons and heavy rainfall events, which can adversely impact large-scale mining projects thus degrading the natural resources relied upon by the rural poor. With climate change, Keywords: typhoons are becoming more powerful, and more unpredictable, and this further complicates the Philippines difficulty of attempting to rely upon mining as an agent of development. Mining ã2015 Elsevier Ltd. All rights reserved. Typhoons Climate change 1. Introduction focal point of this article: the problems inherent in locating large- scale mining projects in the Philippines, a nation vulnerable to On 31 October 2005, during a heavy rainfall event, cyanide typhoons and heavy rainfall events. Attempting to rely upon large- contaminated mine wastes were spilled into the Albay Gulf in the scale mining as a method of accelerating economic development in Bicol Region of the Philippines (Holden and Jacobson, 2012). These such a setting can be problematic; it can degrade the environment mine wastes came from the Rapu–Rapu Polymetallic Project, then relied upon by the rural poor for their subsistence activities and being operated by Australia’s Lafayette Mining. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Persistent Near-Bottom Aggregations of Mesopelagic Animals Along the North Carolina and Virginia Continental Slopes John V
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln USGS Staff -- ubP lished Research US Geological Survey 11-23-2007 Persistent near-bottom aggregations of mesopelagic animals along the North Carolina and Virginia continental slopes John V. Gartner Jr. Natural Science Department SP/G, [email protected] Kenneth J. Sulak Florida Integrated Science Center, US Geological Survey,, [email protected] Steve W. Ross Center for Marine Science, University of North Carolina, [email protected] Ann Marie Necaise Center for Marine Science, University of North Carolina Follow this and additional works at: http://digitalcommons.unl.edu/usgsstaffpub Part of the Geology Commons, Oceanography and Atmospheric Sciences and Meteorology Commons, Other Earth Sciences Commons, and the Other Environmental Sciences Commons Gartner, John V. Jr.; Sulak, Kenneth J.; Ross, Steve W.; and Necaise, Ann Marie, "Persistent near-bottom aggregations of mesopelagic animals along the North Carolina and Virginia continental slopes" (2007). USGS Staff -- Published Research. 1064. http://digitalcommons.unl.edu/usgsstaffpub/1064 This Article is brought to you for free and open access by the US Geological Survey at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in USGS Staff -- ubP lished Research by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Mar Biol (2008) 153:825–841 DOI 10.1007/s00227-007-0855-1 RESEARCH ARTICLE Persistent near-bottom aggregations of mesopelagic animals -
Annual Precipitation in Southeast Asia
Annual N ^ ep Bhutan KA al ^ THMA THIMPHU NDU S a a utr l map w rah e B e X n i Taipei J Precipitation in China Ganges ia BANGLADESH n g ^DHAKA Taiwan T'ainan Southeast Asia Chittagong Kaoshsiung MYANMAR VIETNAM Hong Kong PACIFIC Macau HANOI^ OCEAN I r Haiphong r Luzon a Babuyan Bay of Bengal w LAOS Strait a Gulf of Islands d Locator Map d VIENTIA Tonkin Babuyan Channel y NE 180° 120°W 60°W 0° 60°E 120°E 180° C ^ h Palanan Bay a Lingayen RANGOON o M e Gulf Luzon ^ P k h o Da Nang PHILIPPINE 60°N 60°N ra THAILAND n y g a SEA Quezon City Polillo Gulf of ^ Islands Martaban BANGKOK MANILA ^ CAMBODIA Andaman Albay Gulf Mindoro Islands PHNOM A Mergui A sid PENH Gulf SIMAR SEA Archipelago ^ E Panay Gulf of S n Gulf Thailand A a IN w 60°S 60°S la H a ea ANDAMAN C P S Lianga Bay H M nao SEA T ind a U 180° 120°W 60°W 0° 60°E 120°E 180° Nikobar O Mindanao S S SULU SEA Islands t Palau ra Davao it Pujada Bay o Moro f o Gulf M BRUNEI g Davao a la la e c BANDAR SERI BENGAWAN Gulf c MALAYSIA ip a ^ ch Ar A Sulu E Medan S KUALA A Natuna Besar IA C ^ S CELEBES SEA C Legend LUMPUR Y LU Simeulue MA LA O M S Singapore HALHAMERA SEA ^ Capital Cities u Halmahera m Kepulauan Pontianak Other Major Southeast Asian Cities a Lingga t LAUT Borneo LAUT MALUK r Kepulauan Padang a B LEPAR Balikpapan International Boundary Mentawai a n Teluk Apar k Mac Cluer a Belitung Sulawesi CERAM SEA Gulf Rivers I N D O N E S I A a Ceram e Precipitation - Year n i New Guinea u LAUT DJAWA (JAVA SEA) G 0 mm per year lu w Enggano JAKARTA Te Pis BANDA SEA a e INDIAN n Teluk Rembang LAUT FLORES g N Tanjungkarang- ^ 100 2,000 OCEAN Ja a Telukbetung va (FLORES SEA) u Surabaja r p LAUT BALI SEA a a b 200 2,800 Flores P im DILI an i ^ K n T al te epulaua 400 4,000 B SAVU es L or Lombok m Sumba SEA Ti 600 5,600 Sumbawa TIMOR SEA 1,000 8,000 1,400 10,000 µ 0 290 580 1,160 Miles Australia Map Projection: World Miller Cylindrical Data Source: ESRI 2005 and www.geographynetwork.com Clover van Steenberghe 03.15.07. -
Fishes of the Family Sternoptychidae (Stomiiformes) Collected on the Brazilian Continental Slope Between 11° and 23°S
Zootaxa 2742: 34–48 (2011) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2011 · Magnolia Press ISSN 1175-5334 (online edition) Fishes of the family Sternoptychidae (Stomiiformes) collected on the Brazilian continental slope between 11° and 23°S ADRIANO T. LIMA1, PAULO A. S. COSTA2, ADRIANA C. BRAGA2, GUSTAVO W. A. NUNAN3 & MICHAEL M. MINCARONE4 1Companhia Docas de São Sebastião, Av. Dr. Altino Arantes, 410, São Sebastião, SP, 11600-000, Brazil. E-mail: [email protected] 2Departamento de Ecologia e Recursos Marinhos, Universidade Federal do Estado do Rio de Janeiro, Av. Pasteur 458, ECB, sala 410, Rio de Janeiro, RJ, 22290-240, Brazil. E-mail: [email protected]; [email protected] 3Departamento de Vertebrados, Museu Nacional / UFRJ, Quinta da Boa Vista, Rio de Janeiro, RJ, 20940-040, Brazil. E-mail: [email protected] 4Grupo de Sistemática e Biologia Evolutiva, Núcleo em Ecologia e Desenvolvimento Sócio-Ambiental, Universidade Federal do Rio de Janeiro, Caixa Postal 119331, Macaé, RJ, 27910-970, Brazil. E-mail: [email protected] Abstract Recent pelagic and benthic trawling activities over the Brazilian continental slope between 11° and 23°S captured nine species representing five genera of the stomiiform family Sternoptychidae. Among these, three species are new records for Brazilian waters: Sternoptyx pseudodiaphana, Argyripnus atlanticus, and Polyipnus sp. The known distributions of Argyropelecus aculeatus and Maurolicus stehmanni along the Brazilian coast are extended northward to 13°S and 16°S, respectively, while that of Sternoptyx diaphana is extended southward to 13°S. Argyropelecus hemigymnus, Argyropelecus sladeni, and Sternoptyx pseudobscura were rarely caught (n=2–16). -
PHILIPPINES 2018 Highlights of Events Page 1 of 5
PHILIPPINES 2018 Highlights of Events Page 1 of 5 TROPICAL CYCLONES SEISMIC ACTIVITIES Twenty-one tropical cyclones entered the The country, which lies along the Pacific Ring of Fire, is constantly Philippine Area of Responsibility in 2018, of which frequented by seismic and volcanic activity each year. In 2018, seismic 21 8 made landfall. Five of these were Tropical monitoring by the Philippine Institute of Volcanology and Seismology entered the Depressions (TD). Notable was Typhoon (PHIVOLCS) recorded more than 5,800 seismic events. Around 95% of Philippine Area Mangkhut (Ompong) which made landfall in these events were Magnitude 4.0 and below, and therefore barely felt. of Responsibility September. It was the lone Category 4 typhoon Even with over 250 seismic events with Magnitude 4.0 and above, there that left a trail of damages, and displacement was no significant damage or casualties reported throughout the country. 8 made landfall mostly in northern part of Luzon. Majority of the However, the Magnitude 7.2 offshore quake that rocked Davao Oriental Tropical tropical cyclones that made landfall were province on 29 December 2018 created a 5 Depression Magnitude 4.0 LUZON characterized by heavy and prolonged rainfall, scare in the coastal communities in the & above (257) Tropical affecting 38 provinces which suffered repeated region after PHIVOLCS issued a Tsunami 1 Storm displacements topped by Eastern Visayas region Advisory, which was lifted a few hours later 1 Category 2 (4 out of the 6 provinces). 769 Barangays / Villages after only minor sea level disturbance. 5,868 experienced rain-induced flooding, while landslides 1 Category 4 Magnitude 4.0 Manila were also reported. -
SWFSC Archive
Stomiiformes Chapter 4 Order Stomiiformes Number of suborders (2) Gonostomatoidei; Phosichthyoidei (= Photichthyoidei, Stomioidei). Stomiiform monophyly was demonstrated by Fink and Weitzman (1982); relationships within the order are not settled, e.g., Harold and Weitzman (1996). Number of families 4 (or 5: Harold [1998] suggested that Diplophos, Manducus, and Triplophos do not belong in Gonostomatidae, and Nelson [2006] provi sionally placed them in a separate family, Diplophidae). Number of genera 53 Number of species approx. 391 GENERAL LIFE HISTORY REF Distribution All oceans. Relative abundance Rare to very abundant, depending on taxon. Adult habitat Small to medium size (to ca. 10-40 cm) inhabitants of epi-, meso-, and bathypelagic zones, some are vertical migrators. EARLY LIFE HISTORY Mode of reproduction All species known or assumed to be oviparous with planktonic eggs and larvae. Knowledge of ELH Eggs known for 9 genera, larvae known for 38 genera. ELH Characters: Eggs: spherical, ca. 0.6-3.6 mm in diameter, commonly with double membrane, yolk segmented, with 0-1 oil globule ca. 0.1-0.4 mm in di ameter, perivitelline space narrow to wide. Larvae: slender and elongate initially but some become deep-bodied (primarily some sternoptychids and stomiids); preanal length ranges from approx. 30%BL to > 70% BL, most commonly > about half BL, some taxa with trailing gut that can be > 100% BL; eyes strongly ellipti cal to round, most commonly elliptical, stalked in some species; spines lacking on head and pectoral girdle except in some sternoptychids; myo- meres range from 29-164, most commonly approx. mid-30's to mid- 60's; photophores form during postflexion and/or transformation stage; pigmentation absent to heavy, most commonly light. -
Midpacific Volume31 Issue1.Pdf
Vol. XXXI. No. 1. Lii3ky January, 1926 !A'lt 1Priqralli HMLTN CLOS ED DU 62() M5 ITED STATES AUSTRALASIA HAWAII ORIENT JAVA News Co. Gordon & Gotch Pan-Pacific Union Kelly & Walsh Javasche Boekhandel Trans-Pacific Transportation The Matson Navigation Company is palatial steamers between Honolulu and planning big things for Hawaii in many Los Angeles. The steamers visit Hilo ways. It is behind the great new Royal for the Volcano trip. The B. F. Dilling- Hawaiian Hotel at Waikiki, and is en- ham Co., Ltd., are Honolulu agents for thusing the people of Honolulu to re- the Los Angeles Steamship Company, at newed efforts to place their attractions Fort and Oueen Sts., and here may be before the people of the mainland. arranged passage direct to Los Angeles, The Company is also inducing the and beyond by rail, or you may .arrange people of Hawaii to visit California and to ship your auto or general freight. become acquainted with the people of the' scenic beaches of that state. The Mat- The Oceanic Steamship Company, son Navigation Company maintains a with head offices in San Francisco, and tourist information bureau at its main Brewer & Company as agents in Honolulu, office in the Matson Building in San maintains a fleet of swift palatial steamers Francisco, as well as in the Castle & between San Francisco, Hawaii, and Aus- Cooke Building in Honolulu, where tralia, visiting Fiji and Samoa en route. tours of the Hawaiian Islands may be This is the ideal passage to the South Seas booked. via the sunshine belt to Australasia. -
Report of the Second Workshop on the Biology and Conservation of Small Cetaceans and Dugongs of South-East Asia
CMS Technical Series Publication Nº 9 Report of the Second Workshop on The Biology and Conservation of Small Cetaceans and Dugongs of South-East Asia Edited by W. F. Perrin, R. R. Reeves, M. L. L. Dolar, T. A. Jefferson, H. Marsh, J. Y. Wang and J. Estacion Convention on Migratory Species REPORT OF THE SECOND WORKSHOP ON THE BIOLOGY AND CONSERVATION OF SMALL CETACEANS AND DUGONGS OF SOUTHEAST ASIA Silliman University, Dumaguete City, Philippines 24-26 July, 2002 Edited by W. F. Perrin, R. R. Reeves, M. L. L. Dolar, T. A. Jefferson, H. Marsh, J. Y. Wang and J. Estacion Workshop sponsored by Convention on Migratory Species of Wild Animals; additional support provided by Ocean Park Conservation Foundation, WWF-US and WWF-Philippines. Published by the UNEP/CMS Secretariat Report of the Second Workshop on the Biology and Conservation of Small Cetaceans and Dugongs of South-East Asia UNEP/CMS Secretariat, Bonn, Germany, 161 pages CMS Technical Series Publication No. 9 Edited by: W.F. Perrin, R.R. Reeves, M.L.L. Dolar, T.A. Jefferson, H. Marsh, J.Y. Wang and J. Estacion Cover illustration: digital artwork by Jose T. Badelles from a photograph by Jose Ma. Lorenzo Tan © UNEP/CMS Secretariat 2005 This publication may be reproduced in whole or in part and in any form for educational or non-profit purposes without special permission from the copyright holder, provided acknowledgement of the source is made. UNEP/CMS would appreciate receiving a copy of any publication that uses this publication as a source. No use of this publication may be made for resale or for any other commercial purpose whatsoever with- out prior permission in writing from the UNEP/CMS Secretariat.