Order STOMIIFORMES GONOSTOMATIDAE Bristlemouths by A.S
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CHECKLIST and BIOGEOGRAPHY of FISHES from GUADALUPE ISLAND, WESTERN MEXICO Héctor Reyes-Bonilla, Arturo Ayala-Bocos, Luis E
ReyeS-BONIllA eT Al: CheCklIST AND BIOgeOgRAphy Of fISheS fROm gUADAlUpe ISlAND CalCOfI Rep., Vol. 51, 2010 CHECKLIST AND BIOGEOGRAPHY OF FISHES FROM GUADALUPE ISLAND, WESTERN MEXICO Héctor REyES-BONILLA, Arturo AyALA-BOCOS, LUIS E. Calderon-AGUILERA SAúL GONzáLEz-Romero, ISRAEL SáNCHEz-ALCántara Centro de Investigación Científica y de Educación Superior de Ensenada AND MARIANA Walther MENDOzA Carretera Tijuana - Ensenada # 3918, zona Playitas, C.P. 22860 Universidad Autónoma de Baja California Sur Ensenada, B.C., México Departamento de Biología Marina Tel: +52 646 1750500, ext. 25257; Fax: +52 646 Apartado postal 19-B, CP 23080 [email protected] La Paz, B.C.S., México. Tel: (612) 123-8800, ext. 4160; Fax: (612) 123-8819 NADIA C. Olivares-BAñUELOS [email protected] Reserva de la Biosfera Isla Guadalupe Comisión Nacional de áreas Naturales Protegidas yULIANA R. BEDOLLA-GUzMáN AND Avenida del Puerto 375, local 30 Arturo RAMíREz-VALDEz Fraccionamiento Playas de Ensenada, C.P. 22880 Universidad Autónoma de Baja California Ensenada, B.C., México Facultad de Ciencias Marinas, Instituto de Investigaciones Oceanológicas Universidad Autónoma de Baja California, Carr. Tijuana-Ensenada km. 107, Apartado postal 453, C.P. 22890 Ensenada, B.C., México ABSTRACT recognized the biological and ecological significance of Guadalupe Island, off Baja California, México, is Guadalupe Island, and declared it a Biosphere Reserve an important fishing area which also harbors high (SEMARNAT 2005). marine biodiversity. Based on field data, literature Guadalupe Island is isolated, far away from the main- reviews, and scientific collection records, we pres- land and has limited logistic facilities to conduct scien- ent a comprehensive checklist of the local fish fauna, tific studies. -
1 Exon Probe Sets and Bioinformatics Pipelines for All Levels of Fish Phylogenomics
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics 2 3 Lily C. Hughes1,2,3,*, Guillermo Ortí1,3, Hadeel Saad1, Chenhong Li4, William T. White5, Carole 4 C. Baldwin3, Keith A. Crandall1,2, Dahiana Arcila3,6,7, and Ricardo Betancur-R.7 5 6 1 Department of Biological Sciences, George Washington University, Washington, D.C., U.S.A. 7 2 Computational Biology Institute, Milken Institute of Public Health, George Washington 8 University, Washington, D.C., U.S.A. 9 3 Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian 10 Institution, Washington, D.C., U.S.A. 11 4 College of Fisheries and Life Sciences, Shanghai Ocean University, Shanghai, China 12 5 CSIRO Australian National Fish Collection, National Research Collections of Australia, 13 Hobart, TAS, Australia 14 6 Sam Noble Oklahoma Museum of Natural History, Norman, O.K., U.S.A. 15 7 Department of Biology, University of Oklahoma, Norman, O.K., U.S.A. 16 17 *Corresponding author: Lily C. Hughes, [email protected]. 18 Current address: Department of Organismal Biology and Anatomy, University of Chicago, 19 Chicago, IL. 20 21 Keywords: Actinopterygii, Protein coding, Systematics, Phylogenetics, Evolution, Target 22 capture 23 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. -
Fao/Government Cooperative Programme Scientific Basis
FI:GCP/RLA/140/JPN TECHNICAL DOCUMENT No. 4 FAO/GOVERNMENT COOPERATIVE PROGRAMME SCIENTIFIC BASIS FOR ECOSYSTEM-BASED MANAGEMENT IN THE LESSER ANTILLES INCLUDING INTERACTIONS WITH MARINE MAMMALS AND OTHER TOP PREDATORS CRUISE REPORT FOR THE LAPE ECOSYSTEM SURVEY ON RV CELTIC EXPLORER (CE0607) FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS Barbados, 2006 FI:GCP/RLA/140/JPN TECHNICAL DOCUMENT No. 4 FAO/GOVERNMENT COOPERATIVE PROGRAMME SCIENTIFIC BASIS FOR ECOSYSTEM-BASED MANAGEMENT IN THE LESSER ANTILLES INCLUDING INTERACTIONS WITH MARINE MAMMALS AND OTHER TOP PREDATORS CRUISE REPORT FOR THE LAPE ECOSYSTEM SURVEY ON RV CELTIC EXPLORER (CE0607) Lesser Antilles Pelagic Ecosystem Project (GCP/RLA/140/JPN) Bridgetown, Barbados FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS Barbados, 2006 This technical report is one of a series of reports prepared during the course of the project identified on the title page. The conclusions and recommendations given in the report are those considered appropriate at the time of its preparation. They may be modified in the light of further knowledge gained at subsequent stages of the project. The designations employed and the presentation of material in this information product do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations concerning the legal or development status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries All rights reserved. Reproduction and dissemination of material in this information product for educational or other non-commercial purposes are authorized without any prior written permission from the copyright holders provided the source is fully acknowledged. -
Early Stages of Fishes in the Western North Atlantic Ocean Volume
ISBN 0-9689167-4-x Early Stages of Fishes in the Western North Atlantic Ocean (Davis Strait, Southern Greenland and Flemish Cap to Cape Hatteras) Volume One Acipenseriformes through Syngnathiformes Michael P. Fahay ii Early Stages of Fishes in the Western North Atlantic Ocean iii Dedication This monograph is dedicated to those highly skilled larval fish illustrators whose talents and efforts have greatly facilitated the study of fish ontogeny. The works of many of those fine illustrators grace these pages. iv Early Stages of Fishes in the Western North Atlantic Ocean v Preface The contents of this monograph are a revision and update of an earlier atlas describing the eggs and larvae of western Atlantic marine fishes occurring between the Scotian Shelf and Cape Hatteras, North Carolina (Fahay, 1983). The three-fold increase in the total num- ber of species covered in the current compilation is the result of both a larger study area and a recent increase in published ontogenetic studies of fishes by many authors and students of the morphology of early stages of marine fishes. It is a tribute to the efforts of those authors that the ontogeny of greater than 70% of species known from the western North Atlantic Ocean is now well described. Michael Fahay 241 Sabino Road West Bath, Maine 04530 U.S.A. vi Acknowledgements I greatly appreciate the help provided by a number of very knowledgeable friends and colleagues dur- ing the preparation of this monograph. Jon Hare undertook a painstakingly critical review of the entire monograph, corrected omissions, inconsistencies, and errors of fact, and made suggestions which markedly improved its organization and presentation. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Morphology and Mathematics. by D'arcy Wentworth Thompson. The
( 857 ) XXVII.—Morphology and Mathematics. By D'Arcy Wentworth Thompson. (Read December 7, 1914. MS. received February 1, 1915. Issued separately June 22, 1915.) The study of Organic Form, which we call by GOETHE'S name of Morphology, is but a portion of that wider Science of Form which deals with the forms assumed by matter under all aspects and conditions, and, in a still wider sense, with Forms which are theoretically imaginable. The study of Form may be descriptive merely, or it may become analytical. We begin by describing the shape of an object in the simple words of common speech : we end by denning it in the precise language of mathematics ; and the one method tends to follow the other in strict scientific order and historical continuity. Thus, fer instance, the form of the earth, of a raindrop or a rainbow, the shape of the hanging chain, or the path of a stone thrown up into the air, may all be described, however inadequately, in common words ; but when we have learned to comprehend and to define the sphere, the catenary, or the parabola, we have made a wonderful and perhaps a manifold advance. The mathematical definition of a "form" has a quality of precision which was quite lacking in our earlier stage of mere description ; it is expressed in few words, or in still briefer symbols, and these words or symbols are so pregnant with meaning that thought itself is economised ; we are brought by means of it in touch with GALILEO'S aphorism, that " the Book of Nature is written in characters of Geometry." Next, we soon reach through mathematical analysis to mathematical synthesis ; we discover homologies or identities which were not obvious before, and which our descriptions obscured rather than revealed : as, for instance, when we learn that, however we hold our chain, or however we fire our bullet, the contour of the one or the path of the other is always mathematically homologous. -
Olfactory Organs in the Deep Sea Hatchetfish <I>Sternoptyx
NOTES BULLETIN OF MARINE SCIENCE, 53(3): 1163-1167, 1993 OLFACTORY ORGANS IN THE DEEP SEA HATCHETFISH STERNOPTYX DIAPHANA (STOMIIFORMES, STERNOPTYCHIDAE) Ronald C. Baird and George Y. Jumper It has been estimated that more than 80% of the deep sea fish fauna living at depths greater than 1,000 m exhibit sexual dimorphism in the olfactory system (Marshall, 1967). The most common form of dimorphism involves development oflarge, complex olfactory receptors in males while in females the olfactory system is regressed or microsmatic. Marshall also notes that in contrast, mesopelagic fishes living at depths less than 1,000 m generally have well-developed olfactory systems in both sexes and sexual dimorphism is uncommon. Recently, sexual dimorphism was reported in the olfactory organs of two me- sopelagic sternoptychids Argyropelecus hemigymnus and Valenciennellus tri- punctulatus by Baird et aI., 1990. Unlike many of the deeper living fishesdescribed by Marshall (op. cit.) the olfactory systems in females of these species are relatively well developed. The potential advantages of chemical communication to mate location in deep- sea fishes have been explored by Jumper and Baird (1991) and the use of odor cues appears to greatly enhance mate location in A. hemigymnus. The nasal rosettes of the hatchetfish Sternoptyx diaphana do not exhibit di- morphism. More importantly, the nasal rosettes of both sexes in S. diaphana are much smaller in size, and considerably less complex in structure than in A. hemi- gymnus. In this article, we describe the external morphology of the olfactory organs in sexually mature individuals of S. diaphana, compare them to that found in A. -
Biodiversity of Arctic Marine Fishes: Taxonomy and Zoogeography
Mar Biodiv DOI 10.1007/s12526-010-0070-z ARCTIC OCEAN DIVERSITY SYNTHESIS Biodiversity of arctic marine fishes: taxonomy and zoogeography Catherine W. Mecklenburg & Peter Rask Møller & Dirk Steinke Received: 3 June 2010 /Revised: 23 September 2010 /Accepted: 1 November 2010 # Senckenberg, Gesellschaft für Naturforschung and Springer 2010 Abstract Taxonomic and distributional information on each Six families in Cottoidei with 72 species and five in fish species found in arctic marine waters is reviewed, and a Zoarcoidei with 55 species account for more than half list of families and species with commentary on distributional (52.5%) the species. This study produced CO1 sequences for records is presented. The list incorporates results from 106 of the 242 species. Sequence variability in the barcode examination of museum collections of arctic marine fishes region permits discrimination of all species. The average dating back to the 1830s. It also incorporates results from sequence variation within species was 0.3% (range 0–3.5%), DNA barcoding, used to complement morphological charac- while the average genetic distance between congeners was ters in evaluating problematic taxa and to assist in identifica- 4.7% (range 3.7–13.3%). The CO1 sequences support tion of specimens collected in recent expeditions. Barcoding taxonomic separation of some species, such as Osmerus results are depicted in a neighbor-joining tree of 880 CO1 dentex and O. mordax and Liparis bathyarcticus and L. (cytochrome c oxidase 1 gene) sequences distributed among gibbus; and synonymy of others, like Myoxocephalus 165 species from the arctic region and adjacent waters, and verrucosus in M. scorpius and Gymnelus knipowitschi in discussed in the family reviews. -
Molecular Phylogeny and the Evolution of an Adaptive Visual System in Deep-Sea Dragonfishes (Stomiiformes: Stomiidae)
ORIGINAL ARTICLE doi:10.1111/evo.12322 THE COMPLEX EVOLUTIONARY HISTORY OF SEEING RED: MOLECULAR PHYLOGENY AND THE EVOLUTION OF AN ADAPTIVE VISUAL SYSTEM IN DEEP-SEA DRAGONFISHES (STOMIIFORMES: STOMIIDAE) Christopher P. Kenaley,1,2 Shannon C. DeVaney,3 and Taylor T. Fjeran4 1Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138 2E-mail: [email protected] 3Life Science Department, Los Angeles Pierce College, Woodland Hills, California 91371 4College of Forestry, Oregon State University, Corvallis, Oregon 97331 Received December 12, 2012 Accepted November 12, 2013 The vast majority of deep-sea fishes have retinas composed of only rod cells sensitive to only shortwave blue light, approximately 480–490 nm. A group of deep-sea dragonfishes, the loosejaws (family Stomiidae), possesses far-red emitting photophores and rhodopsins sensitive to long-wave emissions greater than 650 nm. In this study, the rhodopsin diversity within the Stomiidae is surveyed based on an analysis of rod opsin-coding sequences from representatives of 23 of the 28 genera. Using phylogenetic inference, fossil-calibrated estimates of divergence times, and a comparative approach scanning the stomiid phylogeny for shared genotypes and substitution histories, we explore the evolution and timing of spectral tuning in the family. Our results challenge both the monophyly of the family Stomiidae and the loosejaws. Despite paraphyly of the loosejaws, we infer for the first time that far-red visual systems have a single evolutionary origin within the family and that this shift in phenotype occurred at approximately 15.4 Ma. In addition, we found strong evidence that at approximately 11.2 Ma the most recent common ancestor of two dragonfish genera reverted to a primitive shortwave visual system during its evolution from a far-red sensitive dragonfish. -
Marine Fishes from Galicia (NW Spain): an Updated Checklist
1 2 Marine fishes from Galicia (NW Spain): an updated checklist 3 4 5 RAFAEL BAÑON1, DAVID VILLEGAS-RÍOS2, ALBERTO SERRANO3, 6 GONZALO MUCIENTES2,4 & JUAN CARLOS ARRONTE3 7 8 9 10 1 Servizo de Planificación, Dirección Xeral de Recursos Mariños, Consellería de Pesca 11 e Asuntos Marítimos, Rúa do Valiño 63-65, 15703 Santiago de Compostela, Spain. E- 12 mail: [email protected] 13 2 CSIC. Instituto de Investigaciones Marinas. Eduardo Cabello 6, 36208 Vigo 14 (Pontevedra), Spain. E-mail: [email protected] (D. V-R); [email protected] 15 (G.M.). 16 3 Instituto Español de Oceanografía, C.O. de Santander, Santander, Spain. E-mail: 17 [email protected] (A.S); [email protected] (J.-C. A). 18 4Centro Tecnológico del Mar, CETMAR. Eduardo Cabello s.n., 36208. Vigo 19 (Pontevedra), Spain. 20 21 Abstract 22 23 An annotated checklist of the marine fishes from Galician waters is presented. The list 24 is based on historical literature records and new revisions. The ichthyofauna list is 25 composed by 397 species very diversified in 2 superclass, 3 class, 35 orders, 139 1 1 families and 288 genus. The order Perciformes is the most diverse one with 37 families, 2 91 genus and 135 species. Gobiidae (19 species) and Sparidae (19 species) are the 3 richest families. Biogeographically, the Lusitanian group includes 203 species (51.1%), 4 followed by 149 species of the Atlantic (37.5%), then 28 of the Boreal (7.1%), and 17 5 of the African (4.3%) groups. We have recognized 41 new records, and 3 other records 6 have been identified as doubtful. -
Fishes of the Family Sternoptychidae (Stomiiformes) Collected on the Brazilian Continental Slope Between 11° and 23°S
Zootaxa 2742: 34–48 (2011) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2011 · Magnolia Press ISSN 1175-5334 (online edition) Fishes of the family Sternoptychidae (Stomiiformes) collected on the Brazilian continental slope between 11° and 23°S ADRIANO T. LIMA1, PAULO A. S. COSTA2, ADRIANA C. BRAGA2, GUSTAVO W. A. NUNAN3 & MICHAEL M. MINCARONE4 1Companhia Docas de São Sebastião, Av. Dr. Altino Arantes, 410, São Sebastião, SP, 11600-000, Brazil. E-mail: [email protected] 2Departamento de Ecologia e Recursos Marinhos, Universidade Federal do Estado do Rio de Janeiro, Av. Pasteur 458, ECB, sala 410, Rio de Janeiro, RJ, 22290-240, Brazil. E-mail: [email protected]; [email protected] 3Departamento de Vertebrados, Museu Nacional / UFRJ, Quinta da Boa Vista, Rio de Janeiro, RJ, 20940-040, Brazil. E-mail: [email protected] 4Grupo de Sistemática e Biologia Evolutiva, Núcleo em Ecologia e Desenvolvimento Sócio-Ambiental, Universidade Federal do Rio de Janeiro, Caixa Postal 119331, Macaé, RJ, 27910-970, Brazil. E-mail: [email protected] Abstract Recent pelagic and benthic trawling activities over the Brazilian continental slope between 11° and 23°S captured nine species representing five genera of the stomiiform family Sternoptychidae. Among these, three species are new records for Brazilian waters: Sternoptyx pseudodiaphana, Argyripnus atlanticus, and Polyipnus sp. The known distributions of Argyropelecus aculeatus and Maurolicus stehmanni along the Brazilian coast are extended northward to 13°S and 16°S, respectively, while that of Sternoptyx diaphana is extended southward to 13°S. Argyropelecus hemigymnus, Argyropelecus sladeni, and Sternoptyx pseudobscura were rarely caught (n=2–16). -
Dynamics of the Continental Slope Demersal Fish Community in the Colombian Caribbean – Deep-Sea Research in the Caribbean
Andrea Polanco Fernández Dynamics of the continental slope demersal fish community in the Colombian Caribbean – Deep-sea research in the Caribbean DYNAMICS OF THE CONTINENTAL SLOPE DEMERSAL FISH COMMUNITY IN THE COLOMBIAN CARIBBEAN Deep-sea research in the Caribbean by Andrea Polanco F. A Dissertation Submitted to the DEPARTMENT OF MINES (Universidad Nacional de Colombia) and the DEPARTMENT OF BIOLOGY & CHEMISTRY (Justus Liebig University Giessen, Germany) in Fulfillment of the Requirements for obtaining the Degree of DOCTOR IN MARINE SCIENCES at UNIVERSIDAD NACIONAL DE COLOMBIA (UNal) and DOCTOR RER. NAT. at THE JUSTUS-LIEBIG-UNIVERSITY GIESSEN (UniGiessen) 2015 Deans: Prof. Dr. John William Branch Bedoya (Unal) Prof. Dr. Holger Zorn (UniGiessen) Advisors: Prof. Dr. Arturo Acero Pizarro (Unal) Prof. Dr. Thomas Wilke (UniGiessen) Andrea Polanco F. (2014) Dynamics of the continental slope demersal fish community in the Colombian Caribbean - Deep-sea research in the Caribbean. This dissertation has been submitted in fulfillment of the requirements for a cotutelled advanced degree at the Universidad Nacional de Colombia (UNal) and the Justus Liebig University of Giessen adviced by Professor Arturo Acero (UNal) and Professor Thomas Wilke (UniGiessen). A mi familia y al mar… mi vida! To my family and to the sea….. my life! Después de esto, jamás volveré a mirar el mar de la misma manera… Ahora, como un pez en el agua… rodeado de inmensidad y libertad. After this, I will never look again the sea in the same way Now, as a fish in the sea… surounded of inmensity and freedom. TABLE OF CONTENTS TABLE OF CONTENTS .................................................................................................................................. I TABLE OF FIGURES ...................................................................................................................................