SWFSC Archive
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
A Global Assessment of Parasite Diversity in Galaxiid Fishes
diversity Article A Global Assessment of Parasite Diversity in Galaxiid Fishes Rachel A. Paterson 1,*, Gustavo P. Viozzi 2, Carlos A. Rauque 2, Verónica R. Flores 2 and Robert Poulin 3 1 The Norwegian Institute for Nature Research, P.O. Box 5685, Torgarden, 7485 Trondheim, Norway 2 Laboratorio de Parasitología, INIBIOMA, CONICET—Universidad Nacional del Comahue, Quintral 1250, San Carlos de Bariloche 8400, Argentina; [email protected] (G.P.V.); [email protected] (C.A.R.); veronicaroxanafl[email protected] (V.R.F.) 3 Department of Zoology, University of Otago, P.O. Box 56, Dunedin 9054, New Zealand; [email protected] * Correspondence: [email protected]; Tel.: +47-481-37-867 Abstract: Free-living species often receive greater conservation attention than the parasites they support, with parasite conservation often being hindered by a lack of parasite biodiversity knowl- edge. This study aimed to determine the current state of knowledge regarding parasites of the Southern Hemisphere freshwater fish family Galaxiidae, in order to identify knowledge gaps to focus future research attention. Specifically, we assessed how galaxiid–parasite knowledge differs among geographic regions in relation to research effort (i.e., number of studies or fish individuals examined, extent of tissue examination, taxonomic resolution), in addition to ecological traits known to influ- ence parasite richness. To date, ~50% of galaxiid species have been examined for parasites, though the majority of studies have focused on single parasite taxa rather than assessing the full diversity of macro- and microparasites. The highest number of parasites were observed from Argentinean galaxiids, and studies in all geographic regions were biased towards the highly abundant and most widely distributed galaxiid species, Galaxias maculatus. -
BONY FISHES 602 Bony Fishes
click for previous page BONY FISHES 602 Bony Fishes GENERAL REMARKS by K.E. Carpenter, Old Dominion University, Virginia, USA ony fishes constitute the bulk, by far, of both the diversity and total landings of marine organisms encoun- Btered in fisheries of the Western Central Atlantic.They are found in all macrofaunal marine and estuarine habitats and exhibit a lavish array of adaptations to these environments. This extreme diversity of form and taxa presents an exceptional challenge for identification. There are 30 orders and 269 families of bony fishes presented in this guide, representing all families known from the area. Each order and family presents a unique suite of taxonomic problems and relevant characters. The purpose of this preliminary section on technical terms and guide to orders and families is to serve as an introduction and initial identification guide to this taxonomic diversity. It should also serve as a general reference for those features most commonly used in identification of bony fishes throughout the remaining volumes. However, I cannot begin to introduce the many facets of fish biology relevant to understanding the diversity of fishes in a few pages. For this, the reader is directed to one of the several general texts on fish biology such as the ones by Bond (1996), Moyle and Cech (1996), and Helfman et al.(1997) listed below. A general introduction to the fisheries of bony fishes in this region is given in the introduction to these volumes. Taxonomic details relevant to a specific family are explained under each of the appropriate family sections. The classification of bony fishes continues to transform as our knowledge of their evolutionary relationships improves. -
Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi
Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 (http://www.accessscience.com/) Article by: Boschung, Herbert Department of Biological Sciences, University of Alabama, Tuscaloosa, Alabama. Gardiner, Brian Linnean Society of London, Burlington House, Piccadilly, London, United Kingdom. Publication year: 2014 DOI: http://dx.doi.org/10.1036/1097-8542.680400 (http://dx.doi.org/10.1036/1097-8542.680400) Content Morphology Euteleostei Bibliography Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi The most recent group of actinopterygians (rayfin fishes), first appearing in the Upper Triassic (Fig. 1). About 26,840 species are contained within the Teleostei, accounting for more than half of all living vertebrates and over 96% of all living fishes. Teleosts comprise 517 families, of which 69 are extinct, leaving 448 extant families; of these, about 43% have no fossil record. See also: Actinopterygii (/content/actinopterygii/009100); Osteichthyes (/content/osteichthyes/478500) Fig. 1 Cladogram showing the relationships of the extant teleosts with the other extant actinopterygians. (J. S. Nelson, Fishes of the World, 4th ed., Wiley, New York, 2006) 1 of 9 10/7/2015 1:07 PM Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 Morphology Much of the evidence for teleost monophyly (evolving from a common ancestral form) and relationships comes from the caudal skeleton and concomitant acquisition of a homocercal tail (upper and lower lobes of the caudal fin are symmetrical). This type of tail primitively results from an ontogenetic fusion of centra (bodies of vertebrae) and the possession of paired bracing bones located bilaterally along the dorsal region of the caudal skeleton, derived ontogenetically from the neural arches (uroneurals) of the ural (tail) centra. -
CHECKLIST and BIOGEOGRAPHY of FISHES from GUADALUPE ISLAND, WESTERN MEXICO Héctor Reyes-Bonilla, Arturo Ayala-Bocos, Luis E
ReyeS-BONIllA eT Al: CheCklIST AND BIOgeOgRAphy Of fISheS fROm gUADAlUpe ISlAND CalCOfI Rep., Vol. 51, 2010 CHECKLIST AND BIOGEOGRAPHY OF FISHES FROM GUADALUPE ISLAND, WESTERN MEXICO Héctor REyES-BONILLA, Arturo AyALA-BOCOS, LUIS E. Calderon-AGUILERA SAúL GONzáLEz-Romero, ISRAEL SáNCHEz-ALCántara Centro de Investigación Científica y de Educación Superior de Ensenada AND MARIANA Walther MENDOzA Carretera Tijuana - Ensenada # 3918, zona Playitas, C.P. 22860 Universidad Autónoma de Baja California Sur Ensenada, B.C., México Departamento de Biología Marina Tel: +52 646 1750500, ext. 25257; Fax: +52 646 Apartado postal 19-B, CP 23080 [email protected] La Paz, B.C.S., México. Tel: (612) 123-8800, ext. 4160; Fax: (612) 123-8819 NADIA C. Olivares-BAñUELOS [email protected] Reserva de la Biosfera Isla Guadalupe Comisión Nacional de áreas Naturales Protegidas yULIANA R. BEDOLLA-GUzMáN AND Avenida del Puerto 375, local 30 Arturo RAMíREz-VALDEz Fraccionamiento Playas de Ensenada, C.P. 22880 Universidad Autónoma de Baja California Ensenada, B.C., México Facultad de Ciencias Marinas, Instituto de Investigaciones Oceanológicas Universidad Autónoma de Baja California, Carr. Tijuana-Ensenada km. 107, Apartado postal 453, C.P. 22890 Ensenada, B.C., México ABSTRACT recognized the biological and ecological significance of Guadalupe Island, off Baja California, México, is Guadalupe Island, and declared it a Biosphere Reserve an important fishing area which also harbors high (SEMARNAT 2005). marine biodiversity. Based on field data, literature Guadalupe Island is isolated, far away from the main- reviews, and scientific collection records, we pres- land and has limited logistic facilities to conduct scien- ent a comprehensive checklist of the local fish fauna, tific studies. -
1 Exon Probe Sets and Bioinformatics Pipelines for All Levels of Fish Phylogenomics
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics 2 3 Lily C. Hughes1,2,3,*, Guillermo Ortí1,3, Hadeel Saad1, Chenhong Li4, William T. White5, Carole 4 C. Baldwin3, Keith A. Crandall1,2, Dahiana Arcila3,6,7, and Ricardo Betancur-R.7 5 6 1 Department of Biological Sciences, George Washington University, Washington, D.C., U.S.A. 7 2 Computational Biology Institute, Milken Institute of Public Health, George Washington 8 University, Washington, D.C., U.S.A. 9 3 Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian 10 Institution, Washington, D.C., U.S.A. 11 4 College of Fisheries and Life Sciences, Shanghai Ocean University, Shanghai, China 12 5 CSIRO Australian National Fish Collection, National Research Collections of Australia, 13 Hobart, TAS, Australia 14 6 Sam Noble Oklahoma Museum of Natural History, Norman, O.K., U.S.A. 15 7 Department of Biology, University of Oklahoma, Norman, O.K., U.S.A. 16 17 *Corresponding author: Lily C. Hughes, [email protected]. 18 Current address: Department of Organismal Biology and Anatomy, University of Chicago, 19 Chicago, IL. 20 21 Keywords: Actinopterygii, Protein coding, Systematics, Phylogenetics, Evolution, Target 22 capture 23 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. -
Influence of the Seasonal Thermocline on the Vertical Distribution of Larval Fish Assemblages Associated with Atlantic Bluefin T
Article Influence of the Seasonal Thermocline on the Vertical Distribution of Larval Fish Assemblages Associated with Atlantic Bluefin Tuna Spawning Grounds Itziar Alvarez 1,* , Leif K. Rasmuson 2,3,4 , Trika Gerard 2,5, Raul Laiz-Carrion 6, Manuel Hidalgo 1, John T. Lamkin 2, Estrella Malca 2,3, Carmen Ferra 7, Asvin P. Torres 8, Diego Alvarez-Berastegui 9 , Francisco Alemany 1, Jose M. Quintanilla 6, Melissa Martin 1, Jose M. Rodriguez 10 and Patricia Reglero 1 1 Ecosystem’s Oceanography Group (GRECO), Instituto Español de Oceanografía, Centre Oceanogràfic de les Balears, 07015 Palma de Mallorca, Spain; [email protected] (M.H.); [email protected] (F.A.); [email protected] (M.M.); [email protected] (P.R.) 2 NOAA, National Marine Fisheries Service, Southeast Fisheries Science Center, 75 Virginia Beach Drive, Miami, FL 33149, USA; [email protected] (L.K.R.); [email protected] (T.G.); [email protected] (J.T.L.); [email protected] (E.M.) 3 Cooperative Institute for Marine and Atmospheric Studies (CIMAS), University of Miami, Miami, FL 33149, USA 4 Marine Resources Program, Oregon Department of Fish and Wildlife, 2040 SE Marine Science Drive, Newport, OR 97365, USA 5 South Florida Campus, University of Phoenix, Miramar, FL 33027, USA 6 Instituto Español de Oceanografía—Centro Oceanográfico de Málaga (COM-IEO), 29640 Fuengirola, Spain; [email protected] (R.L.-C.); [email protected] (J.M.Q.) 7 National Research Council (CNR), Institute for Biological Resources and Marine Biotechnologies (IRBIM), 98122 Ancona, Italy; [email protected] Citation: Alvarez, I.; Rasmuson, L.K.; 8 Direcció General de Pesca i Medi Marí, Balearic Islands Government (GOIB), 07009 Palma, Spain; Gerard, T.; Laiz-Carrion, R.; Hidalgo, [email protected] M.; Lamkin, J.T.; Malca, E.; Ferra, C.; 9 Balearic Islands Coastal Observing and Forecasting System, Parc Bit, Naorte, Bloc A 2-3, Torres, A.P.; Alvarez-Berastegui, D.; 07121 Palma de Mallorca, Spain; [email protected] et al. -
Fao/Government Cooperative Programme Scientific Basis
FI:GCP/RLA/140/JPN TECHNICAL DOCUMENT No. 4 FAO/GOVERNMENT COOPERATIVE PROGRAMME SCIENTIFIC BASIS FOR ECOSYSTEM-BASED MANAGEMENT IN THE LESSER ANTILLES INCLUDING INTERACTIONS WITH MARINE MAMMALS AND OTHER TOP PREDATORS CRUISE REPORT FOR THE LAPE ECOSYSTEM SURVEY ON RV CELTIC EXPLORER (CE0607) FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS Barbados, 2006 FI:GCP/RLA/140/JPN TECHNICAL DOCUMENT No. 4 FAO/GOVERNMENT COOPERATIVE PROGRAMME SCIENTIFIC BASIS FOR ECOSYSTEM-BASED MANAGEMENT IN THE LESSER ANTILLES INCLUDING INTERACTIONS WITH MARINE MAMMALS AND OTHER TOP PREDATORS CRUISE REPORT FOR THE LAPE ECOSYSTEM SURVEY ON RV CELTIC EXPLORER (CE0607) Lesser Antilles Pelagic Ecosystem Project (GCP/RLA/140/JPN) Bridgetown, Barbados FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS Barbados, 2006 This technical report is one of a series of reports prepared during the course of the project identified on the title page. The conclusions and recommendations given in the report are those considered appropriate at the time of its preparation. They may be modified in the light of further knowledge gained at subsequent stages of the project. The designations employed and the presentation of material in this information product do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations concerning the legal or development status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries All rights reserved. Reproduction and dissemination of material in this information product for educational or other non-commercial purposes are authorized without any prior written permission from the copyright holders provided the source is fully acknowledged. -
A Dataset of Deep-Sea Fishes Surveyed by Research Vessels in the Waters Around Taiwan
A peer-reviewed open-access journal ZooKeys 466:A Dataset 103–110 of(2014) Deep-Sea Fishes Surveyed by Research Vessels in the Waters around Taiwan 103 doi: 10.3897/zookeys.466.8523 DATA PAPER http://zookeys.pensoft.net Launched to accelerate biodiversity research A Dataset of Deep-Sea Fishes Surveyed by Research Vessels in the Waters around Taiwan Kwang-Tsao Shao1, Jack Lin1, Hsin-Ming Yeh2, Mao-Yin Lee1, Lee-Sea Chen1, Hen-Wei Lin1 1 Biodiversity Research Center, Academia Sinica, No. 128, Sec. 2, Academia Rd. Nankang Dist., 115, Taipei, TAIWAN 2 Coastal and Offshore Resources Research Center, Fisheries Research Institute, COA, No.6, Yugang N. 3rd Rd., Qianzhen Dist., 806, Kaohsiung City, TAIWAN Corresponding authors: Jack Lin ([email protected]); Hsin-Ming Yeh ([email protected]) Academic editor: L. Penev | Received 29 August 2014 | Accepted 1 December 2014 | Published 19 December 2014 http://zoobank.org/083BACA5-921D-4C9D-8243-5CDC40F66C43 Citation: Shao K-T, Lin J, Yeh H-M, Lee M-Y, Chen L-S, Lin H-W (2014) A Dataset of Deep-Sea Fishes Surveyed by Research Vessels in the Waters around Taiwan. ZooKeys 466: 103–110. doi: 10.3897/zookeys.466.8523 Abstract The study of deep-sea fish fauna is hampered by a lack of data due to the difficulty and high cost incurred in its surveys and collections. Taiwan is situated along the edge of the Eurasia plate, at the junction of three Large Marine Ecosystems or Ecoregions of the East China Sea, South China Sea and the Philippines. As nearly two-thirds of its surrounding marine ecosystems are deep-sea environments, Taiwan is expected to hold a rich diversity of deep-sea fish. -
Have Chondracanthid Copepods Co-Speciated with Their Teleost Hosts?
Systematic Parasitology 44: 79–85, 1999. 79 © 1999 Kluwer Academic Publishers. Printed in the Netherlands. Have chondracanthid copepods co-speciated with their teleost hosts? Adrian M. Paterson1 & Robert Poulin2 1Ecology and Entomology Group, Lincoln University, PO Box 84, Lincoln, New Zealand 2Department of Zoology, University of Otago, PO Box 56, Dunedin, New Zealand Accepted for publication 26th October, 1998 Abstract Chondracanthid copepods parasitise many teleost species and have a mobile larval stage. It has been suggested that copepod parasites, with free-living infective stages that infect hosts by attaching to their external surfaces, will have co-evolved with their hosts. We examined copepods from the genus Chondracanthus and their teleost hosts for evidence of a close co-evolutionary association by comparing host and parasite phylogenies using TreeMap analysis. In general, significant co-speciation was observed and instances of host switching were rare. The preva- lence of intra-host speciation events was high relative to other such studies and may relate to the large geographical distances over which hosts are spread. Introduction known from the Pacific, and 17 species from the Atlantic (2 species occur in both oceans; none are About one-third of known copepod species are par- reported from the Indian Ocean). asitic on invertebrates or fish (Humes, 1994). The Parasites with direct life-cycles, as well as para- general biology of copepods parasitic on fish is much sites with free-living infective stages that infect hosts better known than that of copepods parasitic on in- by attaching to their external surfaces, are often said to vertebrates (Kabata, 1981). -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Deep-Sea Mystery Solved: Astonishing Larval Transformations and Extreme
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by PubMed Central Biol. Lett. (2009) 5, 235–239 1. INTRODUCTION doi:10.1098/rsbl.2008.0722 New specimens from collecting expeditions continue Published online 20 January 2009 to provide insights into the many mysteries of the Evolutionary biology Earth’s largest ecological habitat, the midwaters of the deep sea between the sunlit surface waters and the bottom. The Cetomimidae (whalefishes), one Deep-sea mystery solved: of the most speciose bathypelagic fish families (nine genera, 20 species), were described by Goode & Bean astonishing larval (1895). There are no larvae among the 600C whale- fish specimens (26–408 mm standard length (SL)), transformations and collected below 1000 m; all sexually mature individ- uals are females (Paxton 1989). Adults have whale- extreme sexual shaped bodies, tiny eyes, huge horizontal mouths, dimorphism unite three cavernous lateral-line canals, and lack pelvic fins and external scales (figure 1f ). The Mirapinnidae (hairy- fish families fish and tapetails) were described as a new order by Bertelsen & Marshall (1956) and comprise five G. David Johnson1,*, John R. Paxton2, species in three genera; they lack scales and lateral Tracey T. Sutton3, Takashi P. Satoh4, lines, have large mouths with almost vertically Tetsuya Sado5, Mutsumi Nishida4 oriented jaws and pelvic fins (figure 1a–d ). The and Masaki Miya5 hairyfish, known from a single specimen, is uniquely 1Division of Fishes, National Museum of Natural History, characterized by a dense covering of hair-like out- Smithsonian Institution, Washington, DC 20560, USA growths over the head, body and fins. -
New Zealand Fishes a Field Guide to Common Species Caught by Bottom, Midwater, and Surface Fishing Cover Photos: Top – Kingfish (Seriola Lalandi), Malcolm Francis
New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing Cover photos: Top – Kingfish (Seriola lalandi), Malcolm Francis. Top left – Snapper (Chrysophrys auratus), Malcolm Francis. Centre – Catch of hoki (Macruronus novaezelandiae), Neil Bagley (NIWA). Bottom left – Jack mackerel (Trachurus sp.), Malcolm Francis. Bottom – Orange roughy (Hoplostethus atlanticus), NIWA. New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing New Zealand Aquatic Environment and Biodiversity Report No: 208 Prepared for Fisheries New Zealand by P. J. McMillan M. P. Francis G. D. James L. J. Paul P. Marriott E. J. Mackay B. A. Wood D. W. Stevens L. H. Griggs S. J. Baird C. D. Roberts‡ A. L. Stewart‡ C. D. Struthers‡ J. E. Robbins NIWA, Private Bag 14901, Wellington 6241 ‡ Museum of New Zealand Te Papa Tongarewa, PO Box 467, Wellington, 6011Wellington ISSN 1176-9440 (print) ISSN 1179-6480 (online) ISBN 978-1-98-859425-5 (print) ISBN 978-1-98-859426-2 (online) 2019 Disclaimer While every effort was made to ensure the information in this publication is accurate, Fisheries New Zealand does not accept any responsibility or liability for error of fact, omission, interpretation or opinion that may be present, nor for the consequences of any decisions based on this information. Requests for further copies should be directed to: Publications Logistics Officer Ministry for Primary Industries PO Box 2526 WELLINGTON 6140 Email: [email protected] Telephone: 0800 00 83 33 Facsimile: 04-894 0300 This publication is also available on the Ministry for Primary Industries website at http://www.mpi.govt.nz/news-and-resources/publications/ A higher resolution (larger) PDF of this guide is also available by application to: [email protected] Citation: McMillan, P.J.; Francis, M.P.; James, G.D.; Paul, L.J.; Marriott, P.; Mackay, E.; Wood, B.A.; Stevens, D.W.; Griggs, L.H.; Baird, S.J.; Roberts, C.D.; Stewart, A.L.; Struthers, C.D.; Robbins, J.E.