Chemistry and Medical Implications of Novel Amphibian Peptides
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Chemistry and Medical lmplications of Novel Amph¡bian Peptides A thesis submitted for the Degree of Doctor of Philosophy by Paul Andrew Wabnitz B.Sc. (Hons) from the Department of Chemistry The University of Adelaide É.ï5 August, 1999 Preface CONTENTS Acknowledgements VI Statement of Originality vil List of Figures vil List of Tables xilt Abstract XV Ghapter l. lntroduction 1.1. Peptide PharmacologY 1.1a.General 1 1.1b. Structure and function of peptide mediators 2 4 1 .1c. Neuropeptides 1.1d. Hormonal pePtides 5 7 1 .1e. Peptide biosYnthesis 1.1f. Peptides as pharmaceuticals I 1.2. Amphibian Peptides 1.2a. Amphibians 10 1.2b. Why studY anurans? 10 1.2c. Anuran antibacterial peptides 16 I .2d. Anuran neuroPePtides 23 1.2e. The Litoria genus 24 1.3. Methodology 1.3a. Surface electrical stimulation 25 1.3b. Analysis bY HPLC 27 1.3c. Mass sPectrometry 28 1.3d. Vacuum Generators ZAB 2HF mass spectrometer 29 1.3e. Finnigan LCQ electrospray mass spectrometer 34 1.3f. Peptide sequencing 38 1.3g. C-terminal end group determination 40 1.3h. Preparation of synthetic peptides 40 41 1.4. References - Preface - Ghapter 2. lnvestigation of Bioactive Peptide Development in the Tadpole Gycle of Litoria splendida 2.1. lntroduction 2.1a. General 46 2.1b. Litoria splendida 50 2.1c. Development cycle of Litoria splendida 54 2.2. Results and Discussion 2.2a. General 56 2.2b. Structure determination 58 2.2c. lsolation of peptides from lawal Litoria splendida 58 2.2d. Conclusions 71 2.3. Experimental 2.3a. Collection and preparation of adult Litoria splendida secretions 73 2.3b. Collection and preparation of larval Litoria splendida samples 73 2.3c. HPLC seParation 74 74 2.3d. Methylation of PePtides 2.3e. Enzyme digestion using Lys-C 75 2.3f. Mass spectrometry analYsis 75 2.39. Antibacterial testing 76 2.3h. Preparation of synthetic peptides 76 2.3i. Automated Edman sequencing 76 2.4. References 77 Ghapter 3. Three-Year Peptide Profiling of Male and Female Litoria splendida 3.1. lntroduction 3.1a. General 79 3.2. Results and Discussion 3.2a. General BO 3.2b. Seasonal variation of the caerulein region 82 3.2c. Additional peptides in the adult male Litoria splendida secretions 86 3.2d. Biological activity determination 91 3.2e. Conclusions 92 3.3. Experimental 3.3a. Collection and preparation of male and female Litoria splendida secretions 93 3.3b. HPLC seParation 93 3.3c. Mass sPectrometry analYsis 94 3.3d. Additional information 94 3.4. References 95 Preface Ghapter 4. Litoria splendida behavioural studies 4.1. lntroduction 4.1a. Pheromones 96 4.1 b. Pheromone categories 97 4.1c. Alarm pheromones 98 4.1d. Sex pheromones 99 4.1e. The pheromone communication system 100 4.1f. Pheromones in amPhibians 101 4.2. Results and Discussion 4.2a. Behavioural studies procedure 103 4.2b. Behavioural studies of caerin 1 .10 with female and male Litoria splendida 104 4.2c. Behavioural studies of caerin 2.3 with female Litoria splendida 105 4.2d. Behavioural studies of caerin 2.3 with male Litoria splendida 110 4.2e. Behavioural studies of caerin 2.3 with female and male Litoria caerulea 111 4.2f. Conclusions 112 4.3. Experimental 4.3a. General 114 4.3b. Experimental Procedure 114 4.4. References 116 Ghapter 5. Peptides lrom Litoria citropa 5.1. lntroduction 5.1a. Litoria citropa 117 5.2. Results and Discussion 5.2a. General 119 5.2b. Citropin 1.1 122 5.2c. Citropin 2.1 130 5.2d. Citropin3.1.2 135 5.2e. Antibacterial activity determination 139 5.2f. The'carpet-like' mechanism 140 5.2g. Determination of structural conformation 142 5.2h. Synthetic modifications 144 5.2i. Conclusions 145 5.3. Experimental 5.3a. Collection and preparation of Litoria citropa secretions 147 5.3b. HPLC seParation 147 5.3c. Mass sPectrometry analYsis 147 5.3d. Additional information 148 5.4. References 149 - Preface - Ghapter 6. Gaerulein-Like Peptides from Litoria citropa 6.1. lntroduction 6.1a. General 150 6.2. Results and Discussion 6.2a. General 152 6.2b. HPLC analysis of fraction A 152 6.2c. HPLC analysis of fraction B 154 6.2d. Structural analysis of peptides from fraction A 155 ô.2e. Structural analysis of peptides from fraction B 160 6.2f. Conclusions 166 6.3. Experimental 6.3a. Collection and preparation oÍ Litoria citropa secretions 168 6.3b. HPLC separation 168 6.3c. Mass spectrometry analysis 169 6.3d. Additional information 169 6.4. References 170 Ghapter 7. nNOS lnhibition Activity and Preliminary Activity of the Gitropin I Peptides 7.1. lntroduction 7.1a. Nitric oxide 171 7.1b. Nitric oxide synthase 172 7.1c. lnducible nitric oxide synthase 173 7.1d. Endothelial nitric oxide synthase 174 7.1e. Neuronal nitric oxide synthase 175 7.1f. Calmodulin 176 7.19. Nitric oxide synthase mechanism 177 7.1h. Binding domains of nNOS 179 7.1 i. Medical implications 181 7.2. Results and Discussion 7.2a. nNOS and calcium channel activity testing 182 7.2b. Anticancer activity 185 7.2c. Conclusions 186 7.3. Experimental 7.3a. nNOS enzymic assay and Ntype calcium channel assay 188 7.3b. Anticancer assay 188 7.3c. Peptide synthesis 188 7.4. References 189 V - Preface - Ghapter 8. Peptides f¡om Litorìa electrica 8.1. lntroduction 8.1a. Litoria electrica 191 8.1b. Comparison oÍ Litoria electricawith Litoria rubella 192 8.2. Results and Discussion 8.2a. General 195 8.2b. Structure determination 196 8.2c. Biological activity determination 201 8.2d. A comparison of the peptide profiles of Litoria electrica and Litoria rubella 201 8.2e. Conclusions 203 8.3. Experimental 8.3a. Collection and preparation of Litoria electrica secretions 204 8.3b. HPLC separation 204 8.3c. Mass spectrometry analysis 204 8.3d. Additional information 205 8.4. References 206 Ghapter 9. Summary and Conclusions 207 Publications 210 V - Preface - Acknowledgements Firstly, I would like to thank my Ph.D. supervisor Professor John H. Bowie for his encouragement, advice, and constant enthusiasm towards my postgraduate studies. I am thankful to him for providing me with the opportunity to undertake such an exciting and rewarding field of research. I am also very grateful to Professor Bowie for making it possible for me to attend and participate in a number of intellectually stimulating conferences, which included two ANZMS conferences and the 'From Venoms to Drugs' conference. I would also like to thank the following people for their direct input into this research. Associate Professor Mike J. Tyler, from the Department of Environmental Biology, University of Adelaide, for his advice and for providing the amphibian secretions' Associate 'Wallace, Professor John C. from the Department of Biochemistry, University of Adelaide, for providing the automated Edman sequencing data. Dr. Lyndon E. Llewellyn and Jason R. Doyle, from the Australia Institute of Marine Science (Queensland), for their willingness in conducting the assay testing. Ben P. Smith, from the Department of Environmental Biology, University of Adelaide, for his help with the behavioural tests and provision of amphibian secretions. Thanks also to Kerry L. Hunter for kindly proofreading this thesis and for her continuous support and encouragement. I would also like to thank the academic, research and technical staff in the Department of Chemistry at the University of Adelaide for their help and advice. In particular I would like to acknowledge Tom Blumenthal, Dr. George Gream, Dr. Suresh Dua, Dr. Simon Steinborner, Dr. John Hevko, C.S. Brian Chia, Tom Rozek, Kate'Wegener and Stefan Creaser. Thanks also to my brothers, David, Daniel and Andrew, for their patience and assistance throughout my doctorate. Finally and most importantly, I would like to great\y acknowledge my parents for their amazingsupport, encouragement and their occasional gentle push throughout my education. VI - Preface - List of Figures Figure 1.1. Oxytocin. Figure 1.2 Structure of the peptide bond. (a) A schematic representation of the electron density around the peptide bond. tnL -C=O and -N-H bonds are parallel, accounting for the rigidity around the C-N. This is because the peptide bond exhibits partial double bond character due to the delocalisation of the ¡-electron orbitals over O-C-N, producing a resonance stabilisation. (b) Bond lengths and angles within the peptide bond. Bond lengths are in nanometers (nm). Figure 1.3. Mechanism of action of hormonal peptides on the target cell. H (free hydrophilic hormone), R (surface reõeptor), AC (adenylate cyclase), ATP (adenosine triphosphate), cAMP (cyclic adenosine monophosphate)' PDE (phosphodiesterase), lK (inactive protein kinase), K (active protein kinase), P (phosphate)' Figure 1.4. Production of a peptide mediator. The gene contains the coding regions (exons) interspersed with non-coding relions (introns). The coding regions of the gene (exons) are transcribed and spliced, which removes the introns and some of the exons, to give-rise to the messenger ribonucleic acid (mRNA). The mRNA segments are translated to produce the prepropeptide. Cleavage of the N-terminal signal peptide produces the propeptide. Figure 1.5. Two different species of poison dart frogs from the genus Phyl/obafes. Figure 1.6. The typical environment of an anuran. Figure '1.7. Representation of a granular gland found in anuran skin. Figure 1.8. Representations of an amphiphilic cr-helix. Figure 1.9. Edmundson helical wheel projection. Figure 1.10. Bacterial cell membrane model. Figure 1 .1 1 . Three-dimensional structure of maculatin 1 .1 . Figure 1.12.'Barrel-Stave' model. Figure 1.13. Distribution (indicated by the black reg¡on) of the genus Liforn throughout Australia. Figure 1.14. SES method. Figure 1 .1 5. Crude aqueous secretion taken from Litoria splendida. Figure 1 .1 6.