Human Papillomavirus and HPV Vaccines: a Review
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Vaccinia Belongs to a Family of Viruses That Is Closely Related to the Smallpox Virus
VACCINIA INFECTION What is it? Vaccinia belongs to a family of viruses that is closely related to the smallpox virus. Because of the similarities between the smallpox and vaccinia viruses, the vaccinia virus is used in the smallpox vaccine. When this virus is used as a vaccine, it allows our immune systems to develop immunity against smallpox. The smallpox vaccine does not actually contain smallpox virus and cannot cause smallpox. Vaccination usually prevents smallpox infection for at least ten years. The vaccinia vaccine against smallpox was used to successfully eradicate smallpox from the human population. More recently, this virus has also become of interest due to concerns about smallpox being used as an agent of bioterrorism. How is the virus spread? Vaccinia can be spread by touching the vaccination site before it has fully healed or by touching clothing or bandages that have been contaminated with the live virus during vaccination. In this manner, vaccinia can spread to other parts of the body and to other individuals. It cannot be spread through the air. What are the symptoms of vaccinia? Vaccinia virus symptoms are similar to smallpox, but milder. Vaccinia may cause rash, fever, headache and body aches. In certain individuals, such as those with weak immune systems, the symptoms can be more severe. What are the potential side effects of the vaccinia vaccine for smallpox? Normal reactions are mild and go away without any treatment.These include: Soreness and redness in the arm where the vaccine was given Slightly swollen, sore glands in the armpits Low grade fever One in approximately three people will feel badly enough to miss school, work or recreational activities Trouble sleeping Serious reactions are not very common but can occur in about 1,000 in every 1 million people who are vaccinated for the first time. -
Comparative Analysis, Distribution, and Characterization of Microsatellites in Orf Virus Genome
www.nature.com/scientificreports OPEN Comparative analysis, distribution, and characterization of microsatellites in Orf virus genome Basanta Pravas Sahu1, Prativa Majee 1, Ravi Raj Singh1, Anjan Sahoo2 & Debasis Nayak 1* Genome-wide in-silico identifcation of microsatellites or simple sequence repeats (SSRs) in the Orf virus (ORFV), the causative agent of contagious ecthyma has been carried out to investigate the type, distribution and its potential role in the genome evolution. We have investigated eleven ORFV strains, which resulted in the presence of 1,036–1,181 microsatellites per strain. The further screening revealed the presence of 83–107 compound SSRs (cSSRs) per genome. Our analysis indicates the dinucleotide (76.9%) repeats to be the most abundant, followed by trinucleotide (17.7%), mononucleotide (4.9%), tetranucleotide (0.4%) and hexanucleotide (0.2%) repeats. The Relative Abundance (RA) and Relative Density (RD) of these SSRs varied between 7.6–8.4 and 53.0–59.5 bp/ kb, respectively. While in the case of cSSRs, the RA and RD ranged from 0.6–0.8 and 12.1–17.0 bp/kb, respectively. Regression analysis of all parameters like the incident of SSRs, RA, and RD signifcantly correlated with the GC content. But in a case of genome size, except incident SSRs, all other parameters were non-signifcantly correlated. Nearly all cSSRs were composed of two microsatellites, which showed no biasedness to a particular motif. Motif duplication pattern, such as, (C)-x-(C), (TG)- x-(TG), (AT)-x-(AT), (TC)- x-(TC) and self-complementary motifs, such as (GC)-x-(CG), (TC)-x-(AG), (GT)-x-(CA) and (TC)-x-(AG) were observed in the cSSRs. -
Characterization of the Rubella Virus Nonstructural Protease Domain and Its Cleavage Site
JOURNAL OF VIROLOGY, July 1996, p. 4707–4713 Vol. 70, No. 7 0022-538X/96/$04.0010 Copyright q 1996, American Society for Microbiology Characterization of the Rubella Virus Nonstructural Protease Domain and Its Cleavage Site 1 2 2 1 JUN-PING CHEN, JAMES H. STRAUSS, ELLEN G. STRAUSS, AND TERYL K. FREY * Department of Biology, Georgia State University, Atlanta, Georgia 30303,1 and Division of Biology, California Institute of Technology, Pasadena, California 911252 Received 27 October 1995/Accepted 3 April 1996 The region of the rubella virus nonstructural open reading frame that contains the papain-like cysteine protease domain and its cleavage site was expressed with a Sindbis virus vector. Cys-1151 has previously been shown to be required for the activity of the protease (L. D. Marr, C.-Y. Wang, and T. K. Frey, Virology 198:586–592, 1994). Here we show that His-1272 is also necessary for protease activity, consistent with the active site of the enzyme being composed of a catalytic dyad consisting of Cys-1151 and His-1272. By means of radiochemical amino acid sequencing, the site in the polyprotein cleaved by the nonstructural protease was found to follow Gly-1300 in the sequence Gly-1299–Gly-1300–Gly-1301. Mutagenesis studies demonstrated that change of Gly-1300 to alanine or valine abrogated cleavage. In contrast, Gly-1299 and Gly-1301 could be changed to alanine with retention of cleavage, but a change to valine abrogated cleavage. Coexpression of a construct that contains a cleavage site mutation (to serve as a protease) together with a construct that contains a protease mutation (to serve as a substrate) failed to reveal trans cleavage. -
Measles and Rubella Initiative Outbreak Response Fund Application Standard Operating Procedures
M&RI SOP Feb 24, 2020 Final Measles and Rubella Initiative Outbreak Response Fund Application Standard Operating Procedures This update of the M&RI ORF Standard Operating Procedures (SOPs) includes the following modifications: 1. To encourage countries to submit applications for ORF support early in the evolution of the outbreak in order to effectively stop measles virus transmission before it becomes more widespread, M&RI will monitor indicators of timeliness of outbreak response immunization in accordance with Immunization Agenda 2030 guidelines; 2. To accelerate the process to receive support, M&RI has removed requirements for advance notification when requesting ORF support and has established a limited timeframe to evaluate the application for ORF support and to provide feedback or issue a decision letter; 3. To more comprehensively address outbreak response linked to timely and efficient use of vaccine, M&RI will allow for greater flexibility in areas of support on an exceptional basis and with adequate justification; 4. To reduce the likelihood of requested additional information or clarifications from M&RI, the SOPs provide greater detail regarding the key data elements and analysis recommended when investigating measles outbreaks and preparing reports, plans and budgets; 5. To maximize use of outbreak investigations and their follow up to strengthen immunization systems, M&RI requests countries to include findings from root cause analyses and, based on these, plans to improve routine immunization, surveillance and outbreak preparedness in the required post-outbreak report. A. Background The Measles and Rubella Initiative (M&RI) has provided funding through an outbreak response fund (ORF) since 2012 to support bundled vaccine and operational costs for measles and rubella outbreak response immunization (ORI), with Gavi supporting up to a total of US$10 million per year for Gavi-eligible countries. -
Vaccinia Viruses As Vectors for Vaccine Antigens Vaccinia Viruses As Vectors for Vaccine Antigens
Vaccinia Viruses as Vectors for Vaccine Antigens Vaccinia Viruses as Vectors for Vaccine Antigens Proceedings of the Workshop on Vaccinia Viruses as Vectors for Vaccine Antigens, held November 13-14, 1984, in Chevy Chase, Maryland, U. S.A. Editor: GeraldV.Quinnan,Jr.,M.D. Director, Division of Virology Center for Drugs and Biologics Food and Drug Administration Bethesda, Maryland Elsevier New York • Amsterdam. Oxford .... i © 1985 by Elsevier Science Publishing Co., Inc. All rights reserved. This book has been registered with the Copyright Clearance Center, Inc. For further information, please contact the Copyright Clearance Center, Salem, Massachusetts. Published by: Elsevier Science Publishing Co., Inc. 52 Vanderbilt Avenue, New York, New York 10017 Sole distributors outside the United States and Canada: Elsevier Science Publishers B.V. P.O. Box 211, 1000 AE Amsterdam, the Netherlands Library of Congress Cataloging in Publication Data Workshop in Vaccinia Viruses as Vectors for Vaccine Antigens (1984: Chevy Chase, Md.) Vaccinia viruses as vectors for vaccine antigens. Includes index. I. Vaccines--Congresses. 2. Vaccinia--Congresses. 3. Viralantigens-- Congresses. 4. Smallpox--Congresses. I. Quinnan, Gerald V. 1I. Title. [DNLM: 1. Antigens, Viral--immunology--Congresses. 2. VacciniaVirus-- genetics--congresses. 3. VacciniaVirus--immunology--congresses. 4. Viral Vaccines--immunology--congresses. QW 165.5.P6 W926v 1984] QR189.W674 1984 615'.372 85-12960 ISBN 0-444-00984-1 Manufactured in the United States of America CONTENTS Preface ..... ..... ° . ............... ix Participants .............................. xi Part I: BIOLOGY OF VACCINIA AND OTHER ORTHOPOX VIRUSES I Chairpersons: G. Schild and J. Nakano Vaccinia Virus ...................... 3 D. Baxby Aspects of the Biology of Orthopox Viruses Relevant to the Use of Recombinant Vaccines as Field Vaccines ..... -
Vaccinia Virus
APPENDIX 2 Vaccinia Virus • Accidental infection following transfer from the vac- cination site to another site (autoinoculation) or to Disease Agent: another person following intimate contact Likelihood of Secondary Transmission: • Vaccinia virus • Significant following direct contact Disease Agent Characteristics: At-Risk Populations: • Family: Poxviridae; Subfamily: Chordopoxvirinae; • Individuals receiving smallpox (vaccinia) vaccination Genus: Orthopoxvirus • Individuals who come in direct contact with vacci- • Virion morphology and size: Enveloped, biconcave nated persons core with two lateral bodies, brick-shaped to pleo- • Those at risk for more severe complications of infec- morphic virions, ~360 ¥ 270 ¥ 250 nm in size tion include the following: • Nucleic acid: Nonsegmented, linear, covalently ᭺ Immune-compromised persons including preg- closed, double-stranded DNA, 18.9-20.0 kb in length nant women • Physicochemical properties: Virus is inactivated at ᭺ Patients with atopy, especially those with eczema 60°C for 8 minutes, but antigen can withstand 100°C; ᭺ Patients with extensive exfoliative skin disease lyophilized virus maintains potency for 18 months at 4-6°C; virus may be stable when dried onto inanimate Vector and Reservoir Involved: surfaces; susceptible to 1% sodium hypochlorite, • No natural host 2% glutaraldehyde, and formaldehyde; disinfection of hands and environmental contamination with soap Blood Phase: and water are effective • Vaccinia DNA was detected by PCR in the blood in 6.5% of 77 military members from 1 to 3 weeks after Disease Name: smallpox (vaccinia) vaccination that resulted in a major skin reaction. • Progressive vaccinia (vaccinia necrosum or vaccinia • In the absence of complications after immunization, gangrenosum) recently published PCR and culture data suggest that • Generalized vaccinia viremia with current vaccines must be rare 3 weeks • Eczema vaccinatum after vaccination. -
Diagnosis and Treatment of Orf
Vet Times The website for the veterinary profession https://www.vettimes.co.uk Diagnosis and treatment of orf Author : Graham Duncanson Categories : Farm animal, Vets Date : March 3, 2008 When I used to do a meat inspection for an hour each week, I came across a case of orf in one of the slaughtermen. The lesion was on the back of his hand. The GP thought it was an abscess and lanced the pustule. I was certain it was orf and got some pus into a viral transport medium. The Veterinary Investigation Centre in Norwich confirmed the case as orf and it took weeks to heal. I have always taken the zoonotic aspects of this disease very seriously ever since. When I got a pustule on my finger from my own sheep, I took potentiated sulphonamides by mouth and it healed within three weeks. I always advise clients to wear rubber gloves when dealing with the disease. I also advise any affected people to go to their GP, but not to let the doctor lance the lesion. Virus Orf, which should be called contagious pustular dermatitis, is not a pox virus but a Parapoxvirus. It is allied to viral diseases in cattle, pseudocowpox (caused by the most common virus found on the bovine udder) and bovine papular stomatitis (the oral form of pseudocowpox occurring in young cattle). Both these cattle viruses are self-limiting, rarely causing problems. Sheeppox, which is a Capripoxvirus, is not found in the UK or western Europe. However, it seems to have spread from the Middle East to Hungary. -
Orf, Also Known As Sheep Pox, Is a Common Disease
ORF http://www.aocd.org Orf, also known as sheep pox, is a common disease in sheep-farming regions of the world. Human infection with the orf virus is typically acquired by direct contact with open lesions of an infected animal. However, infection from fomites can also occur due to the virus being resistant to heat and dryness. An infected person will usually have a single nodular lesion at the point of contact, on the hand or forearm. The cause of orf is attributed to the orf virus. This virus is a member of the parapoxvirus genus which also contains milker’s nodule virus. The parapoxvirus genus is a member of the poxviridae family which also includes small pox and cowpox viruses. Orf is considered a zoonotic disease, meaning it affects animals; yet humans can contract the disease from infected sheep and goats. However, the orf virus is not transmitted human-to-human. Occupational acquisition of the disease is the most common means of contraction of the virus. Once a human is infected with the parapoxvirus a nodular lesion will appear. This lesion evolves through several stages. It begins as a papule but then progresses into a lesion with a red center surrounded by a white ring. The lesion then becomes red and weeping. If the lesion is located in an area with hair, temporary alopecia (hair loss) occurs. With further progression, the lesion becomes dry with black spots on the surface. It then flattens and forms a dry crust. The lesion then heals with minimal scarring. The progression of this disease occurs in about 6 weeks. -
Evaluation of Recombinant Vaccinia Virus—Measles Vaccines in Infant Rhesus Macaques with Preexisting Measles Antibody
Virology 276, 202–213 (2000) doi:10.1006/viro.2000.0564, available online at http://www.idealibrary.com on Evaluation of Recombinant Vaccinia Virus—Measles Vaccines in Infant Rhesus Macaques with Preexisting Measles Antibody Yong-de Zhu,*,1 Paul Rota,† Linda Wyatt,‡ Azaibi Tamin,† Shmuel Rozenblatt,‡,2 Nicholas Lerche,* Bernard Moss,‡ William Bellini,† and Michael McChesney*,§,3 *The California Regional Primate Research Center and §Department of Pathology, School of Medicine, University of California, Davis, California 95616; †Measles Virus Section, Respiratory and Enteric Viruses Branch, Division of Viral and Rickettsial Diseases, National Center for Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia 30333; and ‡Laboratory of Viral Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland 20892 Received June 20, 2000; returned to author for revision July 28, 2000; accepted August 1, 2000 Immunization of newborn infants with standard measles vaccines is not effective because of the presence of maternal antibody. In this study, newborn rhesus macaques were immunized with recombinant vaccinia viruses expressing measles virus hemagglutinin (H) and fusion (F) proteins, using the replication-competent WR strain of vaccinia virus or the replication- defective MVA strain. The infants were boosted at 2 months and then challenged intranasally with measles virus at 5 months of age. Some of the newborn monkeys received measles immune globulin (MIG) prior to the first immunization, and these infants were compared to additional infants that had maternal measles-neutralizing antibody. In the absence of measles antibody, vaccination with either vector induced neutralizing antibody, cytotoxic T cell (CTL) responses to measles virus and protection from systemic measles infection and skin rash. -
Standardization of the Nomenclature for Genetic Characteristics of Wild-Type Rubella Viruses
Standardization of the nomenclature for genetic characteristics of wild-type rubella viruses. A number of genetically distinct groups of rubella viruses currently circulate in the world. The molecular epidemiology of rubella viruses will be primarily useful in rubella control activities for tracking transmission pathways, for documenting changes in the viruses present in particular regions over time, and for documenting interruption of transmission of rubella viruses. Use of molecular epidemiology in control activities is now more relevant since the W HO European Region and the Region of the Americas have adopted congenital rubella infection prevention and elimination goals respectively, targeted for 2010. However, a systematic nomenclature for wild-type rubella viruses has been lacking, which has limited the usefulness of rubella virus genetic data in supporting rubella control activities. A meeting was organized at W HO headquarters on 2-3 September, 2004 to discuss standardization of a nomenclature for describing the genetic characteristics of wild-type rubella viruses. This report is a summary of the outcomes of that meeting. The main goals of the meeting were to provide guidelines for describing the major genetic groups of rubella virus and to establish uniform genetic analysis protocols. In addition, development of a uniform virus naming system, rubella virus strain banks and a sequence database were discussed. Standardization of a nomenclature should allow more efficient communication between the various laboratories conducting molecular characterization of wild-type strains and will provide public health officials with a consistent method for describing viruses associated with cases, outbreaks and epidemics. Epidemiology and logistics Rubella viral surveillance is an important part of rubella surveillance at each phase of rubella control/elimination; the goal should be to obtain a virus sequence from each chain of transmission during the elimination phase or from representative samples from each outbreak during the control phase. -
Document-1.Pdf (100.7Kb)
JOURNAL OF VIROLOGY, Jan. 2004, p. 168–177 Vol. 78, No. 1 0022-538X/04/$08.00ϩ0 DOI: 10.1128/JVI.78.1.168–177.2004 Copyright © 2004, American Society for Microbiology. All Rights Reserved. Genomes of the Parapoxviruses Orf Virus and Bovine Papular Stomatitis Virus G. Delhon,1,2 E. R. Tulman,1 C. L. Afonso,1 Z. Lu,1 A. de la Concha-Bermejillo,3 H. D. Lehmkuhl,4 M. E. Piccone,1 G. F. Kutish,1 and D. L. Rock1* Plum Island Animal Disease Center, Agricultural Research Service, United States Department of Agriculture, Greenport, New York 119441; Area of Virology, School of Veterinary Sciences, University of Buenos Aires, 1427 Buenos Aires, Argentina2; Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, Texas 77843-44673; and National Animal Disease Center, Agricultural Research Service, United States Department of Agriculture, Downloaded from Ames, Iowa 500104 Received 19 August 2003/Accepted 22 September 2003 Bovine papular stomatitis virus (BPSV) and orf virus (ORFV), members of the genus Parapoxvirus of the Poxviridae, are etiologic agents of worldwide diseases affecting cattle and small ruminants, respectively. Here we report the genomic sequences and comparative analysis of BPSV strain BV-AR02 and ORFV strains OV-SA00, isolated from a goat, and OV-IA82, isolated from a sheep. Parapoxvirus (PPV) BV-AR02, OV-SA00, .and OV-IA82 genomes range in size from 134 to 139 kbp, with an average nucleotide composition of 64% G؉C BPSV and ORFV genomes contain 131 and 130 putative genes, respectively, and share colinearity over 127 http://jvi.asm.org/ genes, 88 of which are conserved in all characterized chordopoxviruses. -
The Influence of Secondary Structure, Selection and Recombination On
Cloete et al. Virology Journal 2014, 11:166 http://www.virologyj.com/content/11/1/166 RESEARCH Open Access The influence of secondary structure, selection and recombination on rubella virus nucleotide substitution rate estimates Leendert J Cloete1†, Emil P Tanov1†, Brejnev M Muhire2, Darren P Martin2 and Gordon W Harkins1*† Abstract Background: Annually, rubella virus (RV) still causes severe congenital defects in around 100 000 children globally. An attempt to eradicate RV is currently underway and analytical tools to monitor the global decline of the last remaining RV lineages will be useful for assessing the effectiveness of this endeavour. RV evolves rapidly enough that much of this information might be inferable from RV genomic sequence data. Methods: Using BEASTv1.8.0, we analysed publically available RV sequence data to estimate genome-wide and gene-specific nucleotide substitution rates to test whether current estimates of RV substitution rates are representative of the entire RV genome. We specifically accounted for possible confounders of nucleotide substitution rate estimates, such as temporally biased sampling, sporadic recombination, and natural selection favouring either increased or decreased genetic diversity (estimated by the PARRIS and FUBAR methods), at nucleotide sites within the genomic secondary structures (predicted by the NASP method). Results: We determine that RV nucleotide substitution rates range from 1.19 × 10-3 substitutions/site/year in the E1 region to 7.52 × 10-4 substitutions/site/year in the P150 region. We find that differences between substitution rate estimates in different RV genome regions are largely attributable to temporal sampling biases such that datasets containing higher proportions of recently sampled sequences, will tend to have inflated estimates of mean substitution rates.